Wall clock time and date at job start Tue Mar 31 2020 00:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46789 * 65.00069 * 11 10 9 13 13 N 1.46503 * 109.47212 * 305.00581 * 11 10 9 14 14 C 1.34773 * 119.99980 * 154.99163 * 13 11 10 15 15 O 1.21279 * 120.00434 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99703 * 179.97438 * 14 13 11 17 17 C 1.53003 * 109.46899 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.34897 * 304.16775 * 17 16 14 19 19 C 1.51098 * 110.38760 * 66.45350 * 17 16 14 20 20 C 1.30532 * 111.10237 * 135.24659 * 19 17 16 21 21 C 1.51103 * 111.10577 * 0.02562 * 20 19 17 22 22 C 1.54632 * 104.72220 * 343.56309 * 21 20 19 23 23 C 1.52999 * 109.47457 * 185.00151 * 11 10 9 24 24 C 1.53002 * 117.49620 * 248.74692 * 23 11 10 25 25 C 1.53001 * 117.49881 * 180.09061 * 23 11 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 29 29 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 30 30 H 0.96999 * 119.99599 * 334.99953 * 13 11 10 31 31 H 1.08997 * 109.47333 * 300.00038 * 16 14 13 32 32 H 1.08993 * 109.47320 * 60.00826 * 16 14 13 33 33 H 1.07996 * 124.45106 * 315.22899 * 19 17 16 34 34 H 1.08001 * 124.44629 * 180.02562 * 20 19 17 35 35 H 1.08999 * 110.38791 * 102.37248 * 21 20 19 36 36 H 1.08997 * 110.38399 * 224.63539 * 21 20 19 37 37 H 1.09001 * 111.03381 * 266.59933 * 22 21 20 38 38 H 1.09004 * 111.03694 * 142.66573 * 22 21 20 39 39 H 1.08999 * 115.54708 * 34.42062 * 23 11 10 40 40 H 1.08992 * 117.50150 * 0.02562 * 24 23 11 41 41 H 1.09004 * 117.49599 * 145.02286 * 24 23 11 42 42 H 1.09002 * 117.50007 * 214.98211 * 25 23 11 43 43 H 1.09003 * 117.49733 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4975 -4.8138 -0.9301 13 7 0.1449 -4.6758 1.1329 14 6 -1.0796 -5.2366 1.0820 15 8 -1.4204 -5.8608 0.0996 16 6 -2.0249 -5.0891 2.2464 17 6 -3.3354 -5.8143 1.9344 18 1 -3.7626 -5.4415 1.0035 19 6 -3.1044 -7.3050 1.8475 20 6 -4.0310 -7.9625 2.4901 21 6 -5.0349 -7.0199 3.1121 22 6 -4.3390 -5.6391 3.0975 23 6 1.8250 -6.1411 0.1269 24 6 1.8340 -7.0695 -1.0892 25 6 1.0024 -7.4311 0.1440 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.6849 -3.7145 -0.8894 29 1 2.6848 -3.7144 0.8905 30 1 0.4176 -4.1768 1.9187 31 1 -1.5732 -5.5233 3.1383 32 1 -2.2265 -4.0320 2.4190 33 1 -2.2809 -7.7660 1.3224 34 1 -4.0745 -9.0389 2.5670 35 1 -5.9479 -6.9912 2.5174 36 1 -5.2581 -7.3238 4.1347 37 1 -3.8193 -5.4530 4.0374 38 1 -5.0524 -4.8436 2.8825 39 1 2.7239 -6.1091 0.7426 40 1 1.2983 -6.7388 -1.9789 41 1 2.7389 -7.6487 -1.2734 42 1 1.3604 -8.2480 0.7706 43 1 -0.0808 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754433573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:25 Heat of formation + Delta-G solvation = -10.137695 kcal Electronic energy + Delta-G solvation = -21926.449528 eV Core-core repulsion = 18778.798766 eV Total energy + Delta-G solvation = -3147.650761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20806 -39.51941 -38.14973 -36.61160 -34.91387 -33.12928 -32.28023 -29.83474 -29.58011 -26.49221 -25.66276 -23.30746 -23.06515 -21.90017 -21.26558 -21.17018 -19.60412 -19.21515 -17.87468 -17.27912 -16.86681 -16.65674 -16.59384 -15.85948 -15.82678 -15.23150 -15.06314 -14.73074 -14.43146 -13.85605 -13.52807 -13.17966 -12.89044 -12.76479 -12.75900 -12.67222 -12.64534 -12.47775 -12.28265 -12.12722 -12.05228 -11.92909 -11.85002 -11.63858 -11.23626 -11.08206 -10.97295 -10.56951 -9.85834 -9.74664 -9.01824 -7.94377 -5.24270 1.43914 1.48701 1.51320 1.57412 1.78338 2.26361 2.56327 3.04106 3.39735 3.59179 3.69368 3.77580 3.96263 4.00957 4.07761 4.13408 4.18088 4.35062 4.40495 4.48141 4.58073 4.59148 4.64935 4.70365 4.81185 4.82207 4.90681 5.00540 5.02330 5.04634 5.12030 5.13812 5.29378 5.31682 5.40147 5.45143 5.49846 5.65125 5.73201 6.05664 6.26190 6.70611 7.33674 7.40415 8.06424 8.31163 9.28475 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.004581 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.243583 B = 6111.162873 C = 7632.386301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.297 1.297 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.054 0.946 13 N -0.708 5.708 14 C 0.512 3.488 15 O -0.573 6.573 16 C -0.127 4.127 17 C -0.053 4.053 18 H 0.062 0.938 19 C -0.160 4.160 20 C -0.174 4.174 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.164 4.164 24 C -0.167 4.167 25 C -0.179 4.179 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.407 0.593 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 -16.194 8.216 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.223 1.223 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.074 3.926 12 H 0.073 0.927 13 N -0.358 5.358 14 C 0.300 3.700 15 O -0.453 6.453 16 C -0.166 4.166 17 C -0.072 4.072 18 H 0.080 0.920 19 C -0.178 4.178 20 C -0.192 4.192 21 C -0.135 4.135 22 C -0.156 4.156 23 C -0.184 4.184 24 C -0.205 4.205 25 C -0.216 4.216 26 H 0.059 0.941 27 H 0.207 0.793 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.243 0.757 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.078 -16.505 7.524 18.592 hybrid contribution 0.279 1.350 -0.211 1.395 sum -3.799 -15.155 7.312 17.250 Atomic orbital electron populations 1.69822 1.06634 1.26114 1.59252 1.25538 0.96302 1.01011 1.03479 0.85219 0.77175 0.79180 0.78195 1.22343 1.20052 1.20720 1.19600 0.91578 0.85168 1.41598 0.90421 1.42499 1.05648 1.00863 1.89538 1.21022 0.93413 0.84032 0.99168 1.20481 0.89629 0.93106 0.89379 0.92750 1.45990 1.14840 1.54675 1.20326 1.21128 0.82157 0.77520 0.89184 1.90579 1.76576 1.42863 1.35332 1.21731 0.94657 1.03477 0.96779 1.20773 0.94102 0.93359 0.98964 0.91972 1.23236 0.99615 0.95381 0.99574 1.23500 0.96441 0.99859 0.99388 1.21374 0.97571 0.93047 1.01480 1.22571 0.97456 0.97782 0.97818 1.22556 1.01790 0.90235 1.03775 1.22968 1.02712 1.02819 0.92000 1.23207 0.99556 0.97564 1.01311 0.94050 0.79331 0.94944 0.94251 0.75732 0.86843 0.88209 0.87480 0.84835 0.90549 0.89594 0.89633 0.90309 0.86283 0.90246 0.86751 0.87919 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 4 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -36.92 5.43 -343.47 -1.87 -38.79 16 10 C 0.15 5.84 5.80 86.38 0.50 6.34 16 11 C 0.18 6.12 2.43 44.99 0.11 6.23 16 12 H 0.05 2.21 7.34 -2.38 -0.02 2.19 16 13 N -0.71 -22.50 4.50 -442.52 -1.99 -24.49 16 14 C 0.51 16.29 6.93 87.66 0.61 16.90 16 15 O -0.57 -21.46 11.71 -3.03 -0.04 -21.50 16 16 C -0.13 -3.12 5.12 29.85 0.15 -2.97 16 17 C -0.05 -1.31 2.54 -10.86 -0.03 -1.33 16 18 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 19 C -0.16 -3.93 9.19 26.25 0.24 -3.69 16 20 C -0.17 -3.45 10.78 26.26 0.28 -3.17 16 21 C -0.10 -1.64 6.81 30.53 0.21 -1.43 16 22 C -0.12 -2.18 6.71 31.70 0.21 -1.97 16 23 C -0.16 -4.52 5.36 -10.79 -0.06 -4.58 16 24 C -0.17 -4.31 10.18 30.62 0.31 -4.00 16 25 C -0.18 -4.77 9.74 30.62 0.30 -4.47 16 26 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.37 20.17 7.33 -92.71 -0.68 19.49 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.41 12.18 8.60 -92.71 -0.80 11.38 16 31 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 2.99 7.31 -2.91 -0.02 2.97 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.36 7.91 -2.39 -0.02 1.34 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 40 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 41 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 3.07 5.02 -2.39 -0.01 3.06 16 Total: -1.00 -65.81 347.80 2.09 -63.73 By element: Atomic # 1 Polarization: 46.78 SS G_CDS: -0.48 Total: 46.31 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.15 Total: -14.39 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -3.57 Total: -121.61 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -65.81 2.09 -63.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.587 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds