Wall clock time and date at job start Tue Mar 31 2020 00:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47387 * 295.00694 * 11 10 9 13 13 N 1.46504 * 109.46704 * 54.99916 * 11 10 9 14 14 C 1.34774 * 120.00234 * 205.00070 * 13 11 10 15 15 O 1.21279 * 119.99858 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00062 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.46998 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.35016 * 304.16897 * 17 16 14 19 19 C 1.51109 * 110.38607 * 66.45229 * 17 16 14 20 20 C 1.30533 * 111.10177 * 135.24737 * 19 17 16 21 21 C 1.51102 * 111.10584 * 0.02562 * 20 19 17 22 22 C 1.54635 * 110.38656 * 181.75310 * 17 16 14 23 23 C 1.52995 * 109.47408 * 174.99826 * 11 10 9 24 24 C 1.53000 * 117.50163 * 248.62521 * 23 11 10 25 25 C 1.53006 * 117.49602 * 180.02562 * 23 11 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 29 29 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 30 30 H 0.97009 * 119.99951 * 25.00564 * 13 11 10 31 31 H 1.09000 * 109.46875 * 299.99881 * 16 14 13 32 32 H 1.08995 * 109.47077 * 60.00025 * 16 14 13 33 33 H 1.08000 * 124.44845 * 315.22371 * 19 17 16 34 34 H 1.08002 * 124.44130 * 180.02562 * 20 19 17 35 35 H 1.08992 * 110.38792 * 102.37732 * 21 20 19 36 36 H 1.09002 * 110.38256 * 224.63844 * 21 20 19 37 37 H 1.09000 * 111.03777 * 334.58958 * 22 17 16 38 38 H 1.08998 * 111.03364 * 98.52731 * 22 17 16 39 39 H 1.09000 * 115.55028 * 34.33976 * 23 11 10 40 40 H 1.08992 * 117.49840 * 359.97438 * 24 23 11 41 41 H 1.09001 * 117.49758 * 145.02264 * 24 23 11 42 42 H 1.09004 * 117.49716 * 214.97759 * 25 23 11 43 43 H 1.08999 * 117.50153 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4981 -4.8134 0.9327 13 7 0.1441 -4.6763 -1.1300 14 6 -1.0803 -5.2371 -1.0781 15 8 -1.4207 -5.8602 -0.0949 16 6 -2.0264 -5.0901 -2.2420 17 6 -3.3366 -5.8152 -1.9288 18 1 -3.1425 -6.8589 -1.6814 19 6 -4.0586 -5.1303 -0.7917 20 6 -5.3308 -5.0002 -1.0533 21 6 -5.6695 -5.5773 -2.4081 22 6 -4.3077 -5.7150 -3.1281 23 6 1.8248 -6.1411 -0.1246 24 6 1.6641 -6.9277 -1.4270 25 6 1.0020 -7.4310 -0.1432 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.6849 -3.7145 -0.8894 29 1 2.6848 -3.7144 0.8905 30 1 0.4163 -4.1777 -1.9163 31 1 -2.2280 -4.0329 -2.4149 32 1 -1.5753 -5.5246 -3.1340 33 1 -3.5844 -4.7930 0.1181 34 1 -6.0472 -4.5405 -0.3886 35 1 -6.1419 -6.5533 -2.2978 36 1 -6.3236 -4.8995 -2.9567 37 1 -4.0933 -4.8336 -3.7325 38 1 -4.2757 -6.6204 -3.7341 39 1 2.7980 -6.1718 0.3654 40 1 1.0160 -6.5041 -2.1940 41 1 2.5317 -7.4759 -1.7942 42 1 1.4340 -8.3104 0.3345 43 1 -0.0813 -7.3381 -0.0663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754433575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:32 Heat of formation + Delta-G solvation = 12.143423 kcal Electronic energy + Delta-G solvation = -22075.980932 eV Core-core repulsion = 18929.296352 eV Total energy + Delta-G solvation = -3146.684580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13494 -38.56178 -36.86493 -34.87941 -33.22778 -31.67358 -30.85807 -28.87584 -28.15950 -25.30344 -23.98145 -22.21616 -21.48258 -20.89316 -20.25237 -19.57662 -18.57663 -17.27394 -16.69740 -16.09839 -15.75178 -15.72874 -14.96115 -14.62240 -14.36596 -13.79627 -13.40730 -13.22546 -12.96012 -12.55058 -12.07899 -11.92109 -11.82761 -11.78295 -11.61038 -11.38002 -11.23640 -11.17910 -11.01972 -10.89947 -10.81664 -10.65167 -10.24186 -10.09522 -9.79335 -9.56065 -9.38221 -8.91769 -8.78385 -8.56380 -6.97025 -5.79150 -3.08931 2.44206 2.98343 3.42060 3.46811 3.47765 3.53759 4.09123 4.55071 4.63496 4.65510 4.90030 4.93985 5.10996 5.20914 5.23314 5.28369 5.44655 5.53332 5.54794 5.57923 5.60990 5.69811 5.78441 5.81128 5.85775 5.90899 5.96775 6.03878 6.05567 6.22911 6.24945 6.31184 6.34167 6.51181 6.54907 6.71085 6.73874 6.99722 7.04160 7.66570 7.92709 8.38866 8.61657 9.50631 10.06573 10.42169 11.43116 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.005141 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.205966 B = 5445.353586 C = 7107.980927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.089 0.911 13 N -0.710 5.710 14 C 0.515 3.485 15 O -0.542 6.542 16 C -0.135 4.135 17 C -0.051 4.051 18 H 0.087 0.913 19 C -0.133 4.133 20 C -0.190 4.190 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.187 4.187 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.404 0.596 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -14.209 -6.756 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.107 0.893 13 N -0.361 5.361 14 C 0.302 3.698 15 O -0.421 6.421 16 C -0.175 4.175 17 C -0.069 4.069 18 H 0.105 0.895 19 C -0.151 4.151 20 C -0.208 4.208 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.180 4.180 24 C -0.214 4.214 25 C -0.224 4.224 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.239 0.761 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.380 -14.513 -6.055 16.620 hybrid contribution 0.473 1.292 -0.248 1.398 sum -4.907 -13.221 -6.303 15.447 Atomic orbital electron populations 1.69658 1.05101 1.25806 1.57405 1.24738 0.95496 0.97674 1.02820 0.86267 0.78519 0.83524 0.77850 1.21696 1.21255 1.21271 1.19171 0.91001 0.84090 1.43171 0.91214 1.42334 1.05988 0.99699 1.89577 1.20904 0.93096 0.85190 0.98833 1.20709 0.90209 0.92599 0.90147 0.89256 1.46030 1.14720 1.54644 1.20698 1.20572 0.82004 0.78386 0.88798 1.90600 1.75953 1.41671 1.33860 1.21731 0.95053 1.03505 0.97258 1.20784 0.92922 0.99771 0.93429 0.89494 1.23374 0.95202 0.97454 0.99037 1.23210 0.97171 1.02283 0.98165 1.21306 0.97433 1.00371 0.94267 1.22570 0.94542 1.02042 0.96915 1.22698 1.00720 0.92619 1.01950 1.22855 1.02897 1.04037 0.91657 1.23323 1.01654 0.96716 1.00696 0.93439 0.77994 0.95684 0.94992 0.76112 0.88425 0.89200 0.85414 0.86208 0.91219 0.91552 0.90827 0.91097 0.87450 0.89049 0.89653 0.89914 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.97 5.43 -59.91 -0.33 -18.29 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.85 16 11 C 0.17 2.83 2.59 -67.93 -0.18 2.65 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 N -0.71 -10.97 3.06 -53.80 -0.16 -11.14 16 14 C 0.52 7.89 6.42 -10.98 -0.07 7.82 16 15 O -0.54 -9.64 11.71 5.56 0.07 -9.57 16 16 C -0.14 -1.66 5.12 -27.88 -0.14 -1.80 16 17 C -0.05 -0.62 2.54 -90.71 -0.23 -0.85 16 18 H 0.09 1.11 8.01 -51.93 -0.42 0.70 16 19 C -0.13 -1.86 9.19 -35.70 -0.33 -2.19 16 20 C -0.19 -2.34 10.77 -35.70 -0.38 -2.73 16 21 C -0.10 -0.98 6.81 -26.82 -0.18 -1.17 16 22 C -0.12 -1.22 6.71 -25.00 -0.17 -1.39 16 23 C -0.16 -2.29 5.71 -90.62 -0.52 -2.81 16 24 C -0.18 -2.26 9.73 -26.75 -0.26 -2.52 16 25 C -0.19 -2.59 9.82 -26.75 -0.26 -2.86 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 6.01 8.60 -40.82 -0.35 5.66 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.13 2.07 7.31 -52.49 -0.38 1.69 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 1.44 8.11 -51.93 -0.42 1.01 16 40 H 0.09 1.16 6.66 -51.93 -0.35 0.82 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 1.87 5.02 -51.93 -0.26 1.61 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -30.47 344.86 -9.58 -40.05 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -7.06 Total: 15.96 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.99 Total: -12.22 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.23 Total: -56.54 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.47 -9.58 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.189 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds