Wall clock time and date at job start Tue Mar 31 2020 00:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47387 * 295.00694 * 11 10 9 13 13 N 1.46504 * 109.46704 * 54.99916 * 11 10 9 14 14 C 1.34774 * 120.00234 * 205.00070 * 13 11 10 15 15 O 1.21279 * 119.99858 * 0.02562 * 14 13 11 16 16 C 1.50704 * 120.00062 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.46998 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.35016 * 304.16897 * 17 16 14 19 19 C 1.51109 * 110.38607 * 66.45229 * 17 16 14 20 20 C 1.30533 * 111.10177 * 135.24737 * 19 17 16 21 21 C 1.51102 * 111.10584 * 0.02562 * 20 19 17 22 22 C 1.54635 * 110.38656 * 181.75310 * 17 16 14 23 23 C 1.52995 * 109.47408 * 174.99826 * 11 10 9 24 24 C 1.53000 * 117.50163 * 248.62521 * 23 11 10 25 25 C 1.53006 * 117.49602 * 180.02562 * 23 11 10 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 29 29 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 30 30 H 0.97009 * 119.99951 * 25.00564 * 13 11 10 31 31 H 1.09000 * 109.46875 * 299.99881 * 16 14 13 32 32 H 1.08995 * 109.47077 * 60.00025 * 16 14 13 33 33 H 1.08000 * 124.44845 * 315.22371 * 19 17 16 34 34 H 1.08002 * 124.44130 * 180.02562 * 20 19 17 35 35 H 1.08992 * 110.38792 * 102.37732 * 21 20 19 36 36 H 1.09002 * 110.38256 * 224.63844 * 21 20 19 37 37 H 1.09000 * 111.03777 * 334.58958 * 22 17 16 38 38 H 1.08998 * 111.03364 * 98.52731 * 22 17 16 39 39 H 1.09000 * 115.55028 * 34.33976 * 23 11 10 40 40 H 1.08992 * 117.49840 * 359.97438 * 24 23 11 41 41 H 1.09001 * 117.49758 * 145.02264 * 24 23 11 42 42 H 1.09004 * 117.49716 * 214.97759 * 25 23 11 43 43 H 1.08999 * 117.50153 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4981 -4.8134 0.9327 13 7 0.1441 -4.6763 -1.1300 14 6 -1.0803 -5.2371 -1.0781 15 8 -1.4207 -5.8602 -0.0949 16 6 -2.0264 -5.0901 -2.2420 17 6 -3.3366 -5.8152 -1.9288 18 1 -3.1425 -6.8589 -1.6814 19 6 -4.0586 -5.1303 -0.7917 20 6 -5.3308 -5.0002 -1.0533 21 6 -5.6695 -5.5773 -2.4081 22 6 -4.3077 -5.7150 -3.1281 23 6 1.8248 -6.1411 -0.1246 24 6 1.6641 -6.9277 -1.4270 25 6 1.0020 -7.4310 -0.1432 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.6849 -3.7145 -0.8894 29 1 2.6848 -3.7144 0.8905 30 1 0.4163 -4.1777 -1.9163 31 1 -2.2280 -4.0329 -2.4149 32 1 -1.5753 -5.5246 -3.1340 33 1 -3.5844 -4.7930 0.1181 34 1 -6.0472 -4.5405 -0.3886 35 1 -6.1419 -6.5533 -2.2978 36 1 -6.3236 -4.8995 -2.9567 37 1 -4.0933 -4.8336 -3.7325 38 1 -4.2757 -6.6204 -3.7341 39 1 2.7980 -6.1718 0.3654 40 1 1.0160 -6.5041 -2.1940 41 1 2.5317 -7.4759 -1.7942 42 1 1.4340 -8.3104 0.3345 43 1 -0.0813 -7.3381 -0.0663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754433575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:31 Heat of formation + Delta-G solvation = -5.306804 kcal Electronic energy + Delta-G solvation = -22076.737631 eV Core-core repulsion = 18929.296352 eV Total energy + Delta-G solvation = -3147.441278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34597 -39.58004 -38.08463 -36.54621 -34.74579 -33.18232 -32.27044 -29.87055 -29.65927 -26.48402 -25.72570 -23.44951 -22.96736 -21.99543 -21.21792 -20.84323 -19.66040 -19.18135 -17.89036 -17.31920 -17.11217 -16.76646 -16.53840 -15.85658 -15.58191 -15.20124 -15.14573 -14.64701 -14.52080 -13.79246 -13.44156 -13.12959 -12.93228 -12.85191 -12.76760 -12.68060 -12.66448 -12.63208 -12.25843 -12.13638 -12.04498 -11.97068 -11.83788 -11.63875 -11.24736 -10.97895 -10.81915 -10.59777 -9.86719 -9.76493 -9.01690 -7.94540 -5.24332 1.40933 1.48216 1.50857 1.56962 1.76509 2.32292 2.55857 2.97838 3.39670 3.61599 3.70563 3.75397 3.96547 4.03104 4.08091 4.12843 4.19491 4.37440 4.43611 4.51093 4.57965 4.61242 4.67615 4.69246 4.77279 4.85236 4.89535 4.98650 5.03997 5.07057 5.13234 5.17394 5.28218 5.31591 5.41294 5.45847 5.49732 5.64938 5.73874 5.99976 6.25936 6.68569 7.33440 7.39146 8.06728 8.31108 9.28283 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.005141 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.205966 B = 5445.353586 C = 7107.980927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.298 1.298 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.180 3.820 12 H 0.056 0.944 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.570 6.570 16 C -0.128 4.128 17 C -0.047 4.047 18 H 0.078 0.922 19 C -0.168 4.168 20 C -0.181 4.181 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.170 4.170 24 C -0.158 4.158 25 C -0.190 4.190 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -15.096 -8.744 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.224 1.224 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.074 3.926 12 H 0.074 0.926 13 N -0.359 5.359 14 C 0.299 3.701 15 O -0.450 6.450 16 C -0.168 4.168 17 C -0.065 4.065 18 H 0.096 0.904 19 C -0.186 4.186 20 C -0.199 4.199 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.189 4.189 24 C -0.195 4.195 25 C -0.226 4.226 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.244 0.756 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.647 -15.429 -8.054 18.014 hybrid contribution 0.240 1.516 0.450 1.599 sum -4.408 -13.913 -7.604 16.456 Atomic orbital electron populations 1.69827 1.06659 1.26075 1.59335 1.25541 0.96286 1.01035 1.03549 0.85219 0.77164 0.79180 0.78216 1.22412 1.20678 1.20038 1.19599 0.91572 0.85167 1.41469 0.90400 1.42504 1.05634 1.00881 1.89514 1.21015 0.93435 0.84017 0.99154 1.20400 0.89639 0.93164 0.89396 0.92625 1.46001 1.14830 1.54769 1.20318 1.21163 0.82023 0.77615 0.89324 1.90594 1.76343 1.42916 1.35195 1.21760 0.94569 1.03539 0.96929 1.20766 0.93171 0.98788 0.93806 0.90357 1.23313 0.96378 0.99858 0.99080 1.23535 0.96480 1.00531 0.99321 1.21376 0.98019 1.01218 0.92688 1.22584 0.93212 1.03498 0.95980 1.22608 1.00954 0.91283 1.04088 1.22944 1.03185 1.02580 0.90785 1.23256 1.00412 0.96893 1.02082 0.94103 0.79365 0.94231 0.94955 0.75641 0.88865 0.85980 0.88985 0.85827 0.89808 0.90017 0.90179 0.88810 0.86204 0.88941 0.87356 0.88297 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 4 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.25 -13.50 9.99 84.03 0.84 -12.66 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.92 5.43 -343.47 -1.87 -38.79 16 10 C 0.15 5.82 5.80 86.38 0.50 6.33 16 11 C 0.18 6.10 2.59 44.99 0.12 6.22 16 12 H 0.06 2.26 7.58 -2.38 -0.02 2.25 16 13 N -0.71 -22.06 3.06 -442.53 -1.35 -23.41 16 14 C 0.51 15.96 6.42 87.66 0.56 16.53 16 15 O -0.57 -21.28 11.71 -3.03 -0.04 -21.32 16 16 C -0.13 -3.07 5.12 29.85 0.15 -2.92 16 17 C -0.05 -1.11 2.54 -10.85 -0.03 -1.14 16 18 H 0.08 1.98 8.01 -2.39 -0.02 1.97 16 19 C -0.17 -4.90 9.19 26.26 0.24 -4.66 16 20 C -0.18 -4.41 10.77 26.26 0.28 -4.12 16 21 C -0.10 -1.74 6.81 30.54 0.21 -1.53 16 22 C -0.12 -2.00 6.71 31.71 0.21 -1.79 16 23 C -0.17 -4.67 5.71 -10.79 -0.06 -4.73 16 24 C -0.16 -3.66 9.73 30.58 0.30 -3.36 16 25 C -0.19 -5.06 9.82 30.58 0.30 -4.76 16 26 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.37 20.20 7.33 -92.71 -0.68 19.52 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.41 12.00 8.60 -92.70 -0.80 11.20 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 3.30 7.31 -2.91 -0.02 3.28 16 34 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.31 7.91 -2.39 -0.02 1.29 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 2.99 8.11 -2.39 -0.02 2.97 16 40 H 0.09 2.14 6.66 -2.39 -0.02 2.12 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.09 3.05 5.02 -2.39 -0.01 3.03 16 Total: -1.00 -66.80 344.86 2.68 -64.12 By element: Atomic # 1 Polarization: 47.18 SS G_CDS: -0.47 Total: 46.70 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.09 Total: -16.21 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -2.94 Total: -120.93 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -66.80 2.68 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.816 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds