Wall clock time and date at job start Tue Mar 31 2020 00:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46734 * 65.00048 * 11 10 9 13 13 N 1.46499 * 109.47128 * 305.00135 * 11 10 9 14 14 C 1.34776 * 119.99869 * 155.00256 * 13 11 10 15 15 O 1.21271 * 120.00237 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99577 * 179.97438 * 14 13 11 17 17 C 1.53004 * 109.46964 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.34280 * 54.29667 * 17 16 14 19 19 C 1.51105 * 110.38663 * 292.01224 * 17 16 14 20 20 C 1.30527 * 111.10075 * 224.74946 * 19 17 16 21 21 C 1.51100 * 111.10781 * 0.02562 * 20 19 17 22 22 C 1.54636 * 110.38564 * 176.58539 * 17 16 14 23 23 C 1.52998 * 109.47197 * 184.99768 * 11 10 9 24 24 C 1.53003 * 117.49940 * 248.62380 * 23 11 10 25 25 C 1.53000 * 60.00151 * 252.50987 * 24 23 11 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 0.97002 * 119.99759 * 334.99491 * 13 11 10 31 31 H 1.08994 * 109.47322 * 299.99856 * 16 14 13 32 32 H 1.09005 * 109.47293 * 59.99873 * 16 14 13 33 33 H 1.07994 * 124.44907 * 44.73439 * 19 17 16 34 34 H 1.07996 * 124.44558 * 180.02562 * 20 19 17 35 35 H 1.09001 * 110.38596 * 135.24376 * 21 20 19 36 36 H 1.08995 * 110.38755 * 257.51281 * 21 20 19 37 37 H 1.08999 * 111.03730 * 261.47836 * 22 17 16 38 38 H 1.08991 * 111.03492 * 25.41716 * 22 17 16 39 39 H 1.08997 * 115.55221 * 34.32752 * 23 11 10 40 40 H 1.09004 * 117.49920 * 359.97438 * 24 23 11 41 41 H 1.08992 * 117.49947 * 145.02287 * 24 23 11 42 42 H 1.08998 * 117.50096 * 252.50869 * 25 24 23 43 43 H 1.09004 * 117.49870 * 107.48155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4979 -4.8134 -0.9339 13 7 0.1438 -4.6763 1.1288 14 6 -1.0806 -5.2372 1.0769 15 8 -1.4210 -5.8602 0.0937 16 6 -2.0267 -5.0901 2.2407 17 6 -3.3375 -5.8142 1.9270 18 1 -3.1416 -6.8508 1.6527 19 6 -4.0770 -5.1064 0.8155 20 6 -5.3463 -4.9888 1.0959 21 6 -5.6650 -5.5981 2.4414 22 6 -4.2926 -5.7497 3.1414 23 6 1.8245 -6.1412 0.1234 24 6 1.8320 -7.0704 -1.0921 25 6 1.0017 -7.4311 0.1413 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.4160 -4.1778 1.9152 31 1 -1.5757 -5.5246 3.1327 32 1 -2.2284 -4.0329 2.4137 33 1 -3.6157 -4.7449 -0.0917 34 1 -6.0734 -4.5179 0.4510 35 1 -6.3137 -4.9354 3.0143 36 1 -6.1357 -6.5730 2.3149 37 1 -4.2477 -6.6699 3.7239 38 1 -4.0745 -4.8828 3.7650 39 1 2.7238 -6.1093 0.7384 40 1 1.2946 -6.7404 -1.9812 41 1 2.7364 -7.6499 -1.2770 42 1 1.3600 -8.2479 0.7679 43 1 -0.0815 -7.3381 0.0637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754433576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:35 Heat of formation + Delta-G solvation = 8.009410 kcal Electronic energy + Delta-G solvation = -21991.442697 eV Core-core repulsion = 18844.578853 eV Total energy + Delta-G solvation = -3146.863844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07123 -38.55178 -37.00903 -35.18913 -33.54074 -31.71476 -30.82201 -28.91910 -27.90532 -25.29941 -23.72107 -22.19982 -21.75213 -20.86681 -20.29287 -20.00588 -18.62014 -17.35584 -16.78345 -16.23194 -15.86977 -15.38556 -15.20739 -14.86806 -14.11422 -14.03037 -13.66824 -13.41177 -12.98243 -12.68800 -12.26783 -12.01394 -11.85328 -11.82980 -11.62478 -11.29678 -11.25379 -11.21559 -11.03461 -10.74165 -10.71616 -10.60958 -10.14626 -10.08782 -9.95095 -9.44406 -9.20097 -8.93200 -8.83493 -8.64087 -7.05373 -6.13154 -3.13852 2.38662 2.91675 3.39059 3.49977 3.53603 3.71115 4.11025 4.58754 4.60616 4.62051 4.84185 4.86860 5.04788 5.13193 5.22482 5.25564 5.37311 5.43494 5.52807 5.53437 5.57102 5.64013 5.72435 5.74718 5.80948 5.83528 5.87169 5.92138 6.00359 6.10980 6.17666 6.26194 6.31375 6.44032 6.48016 6.61493 6.67436 6.91028 6.98565 7.77216 7.85694 8.54561 8.72815 9.18605 10.05342 10.20060 11.34860 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.005166 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.910392 B = 5419.272727 C = 7205.296420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.154 3.846 11 C 0.167 3.833 12 H 0.085 0.915 13 N -0.711 5.711 14 C 0.516 3.484 15 O -0.544 6.544 16 C -0.135 4.135 17 C -0.051 4.051 18 H 0.088 0.912 19 C -0.135 4.135 20 C -0.188 4.188 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.184 4.184 26 H 0.254 0.746 27 H 0.369 0.631 28 H 0.035 0.965 29 H 0.025 0.975 30 H 0.403 0.597 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 -14.459 6.173 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.026 3.974 11 C 0.063 3.937 12 H 0.104 0.896 13 N -0.361 5.361 14 C 0.303 3.697 15 O -0.423 6.423 16 C -0.175 4.175 17 C -0.069 4.069 18 H 0.106 0.894 19 C -0.153 4.153 20 C -0.206 4.206 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.182 4.182 24 C -0.209 4.209 25 C -0.221 4.221 26 H 0.066 0.934 27 H 0.202 0.798 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.237 0.763 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.951 -13.218 5.476 15.140 hybrid contribution 0.279 -1.393 0.268 1.446 sum -4.672 -14.611 5.744 16.380 Atomic orbital electron populations 1.70890 1.06036 1.28400 1.53374 1.25785 0.97028 1.00987 1.00300 0.83239 0.74213 0.75582 0.75867 1.21021 1.22256 1.22250 1.20021 0.92031 0.85742 1.48752 0.91738 1.42340 1.04995 1.00701 1.90807 1.20843 0.92949 0.84650 0.98963 1.20781 0.90195 0.92716 0.90052 0.89646 1.46039 1.14730 1.54701 1.20657 1.20588 0.82037 0.78304 0.88786 1.90593 1.76122 1.41673 1.33907 1.21732 0.95050 1.03430 0.97297 1.20788 0.92870 0.99735 0.93528 0.89432 1.23342 0.95213 0.97694 0.99051 1.23216 0.97194 1.01971 0.98208 1.21334 0.97405 1.00285 0.94381 1.22596 0.94540 1.02067 0.96870 1.22635 1.01448 0.91475 1.02684 1.22881 1.02044 1.03189 0.92796 1.23255 1.00730 0.97378 1.00746 0.93434 0.79762 0.94756 0.95741 0.76266 0.89049 0.88562 0.85584 0.86153 0.91481 0.91165 0.91022 0.90836 0.87989 0.88816 0.89231 0.89961 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.75 29.92 -169.99 -5.09 20.66 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.30 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.33 -9.36 9.99 -15.06 -0.15 -9.51 16 8 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.74 -18.39 5.43 -59.91 -0.33 -18.71 16 10 C 0.15 3.06 5.80 -4.05 -0.02 3.03 16 11 C 0.17 2.83 2.43 -67.93 -0.17 2.67 16 12 H 0.09 1.65 7.33 -51.93 -0.38 1.27 16 13 N -0.71 -11.07 4.50 -53.81 -0.24 -11.31 16 14 C 0.52 7.89 6.94 -10.98 -0.08 7.81 16 15 O -0.54 -9.61 11.82 5.57 0.07 -9.55 16 16 C -0.14 -1.65 5.10 -27.88 -0.14 -1.79 16 17 C -0.05 -0.61 2.53 -90.71 -0.23 -0.84 16 18 H 0.09 1.12 7.96 -51.93 -0.41 0.70 16 19 C -0.14 -1.86 9.23 -35.70 -0.33 -2.19 16 20 C -0.19 -2.28 10.78 -35.70 -0.38 -2.66 16 21 C -0.10 -0.97 6.81 -26.74 -0.18 -1.15 16 22 C -0.12 -1.21 6.72 -24.92 -0.17 -1.37 16 23 C -0.16 -2.34 5.36 -90.62 -0.49 -2.83 16 24 C -0.17 -2.31 10.18 -26.73 -0.27 -2.58 16 25 C -0.18 -2.54 9.73 -26.73 -0.26 -2.80 16 26 H 0.25 7.77 6.77 -40.82 -0.28 7.49 16 27 H 0.37 9.47 6.17 -40.82 -0.25 9.22 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.40 6.02 8.60 -40.82 -0.35 5.66 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.13 2.00 7.44 -52.49 -0.39 1.61 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 39 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 40 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -31.70 346.31 -9.58 -41.28 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -7.01 Total: 16.23 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.96 Total: -15.56 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.19 Total: -58.28 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.09 Total: 20.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.70 -9.58 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.288 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds