Wall clock time and date at job start Tue Mar 31 2020 00:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46734 * 65.00048 * 11 10 9 13 13 N 1.46499 * 109.47128 * 305.00135 * 11 10 9 14 14 C 1.34776 * 119.99869 * 155.00256 * 13 11 10 15 15 O 1.21271 * 120.00237 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99577 * 179.97438 * 14 13 11 17 17 C 1.53004 * 109.46964 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.34280 * 54.29667 * 17 16 14 19 19 C 1.51105 * 110.38663 * 292.01224 * 17 16 14 20 20 C 1.30527 * 111.10075 * 224.74946 * 19 17 16 21 21 C 1.51100 * 111.10781 * 0.02562 * 20 19 17 22 22 C 1.54636 * 110.38564 * 176.58539 * 17 16 14 23 23 C 1.52998 * 109.47197 * 184.99768 * 11 10 9 24 24 C 1.53003 * 117.49940 * 248.62380 * 23 11 10 25 25 C 1.53000 * 60.00151 * 252.50987 * 24 23 11 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 0.97002 * 119.99759 * 334.99491 * 13 11 10 31 31 H 1.08994 * 109.47322 * 299.99856 * 16 14 13 32 32 H 1.09005 * 109.47293 * 59.99873 * 16 14 13 33 33 H 1.07994 * 124.44907 * 44.73439 * 19 17 16 34 34 H 1.07996 * 124.44558 * 180.02562 * 20 19 17 35 35 H 1.09001 * 110.38596 * 135.24376 * 21 20 19 36 36 H 1.08995 * 110.38755 * 257.51281 * 21 20 19 37 37 H 1.08999 * 111.03730 * 261.47836 * 22 17 16 38 38 H 1.08991 * 111.03492 * 25.41716 * 22 17 16 39 39 H 1.08997 * 115.55221 * 34.32752 * 23 11 10 40 40 H 1.09004 * 117.49920 * 359.97438 * 24 23 11 41 41 H 1.08992 * 117.49947 * 145.02287 * 24 23 11 42 42 H 1.08998 * 117.50096 * 252.50869 * 25 24 23 43 43 H 1.09004 * 117.49870 * 107.48155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4979 -4.8134 -0.9339 13 7 0.1438 -4.6763 1.1288 14 6 -1.0806 -5.2372 1.0769 15 8 -1.4210 -5.8602 0.0937 16 6 -2.0267 -5.0901 2.2407 17 6 -3.3375 -5.8142 1.9270 18 1 -3.1416 -6.8508 1.6527 19 6 -4.0770 -5.1064 0.8155 20 6 -5.3463 -4.9888 1.0959 21 6 -5.6650 -5.5981 2.4414 22 6 -4.2926 -5.7497 3.1414 23 6 1.8245 -6.1412 0.1234 24 6 1.8320 -7.0704 -1.0921 25 6 1.0017 -7.4311 0.1413 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.4160 -4.1778 1.9152 31 1 -1.5757 -5.5246 3.1327 32 1 -2.2284 -4.0329 2.4137 33 1 -3.6157 -4.7449 -0.0917 34 1 -6.0734 -4.5179 0.4510 35 1 -6.3137 -4.9354 3.0143 36 1 -6.1357 -6.5730 2.3149 37 1 -4.2477 -6.6699 3.7239 38 1 -4.0745 -4.8828 3.7650 39 1 2.7238 -6.1093 0.7384 40 1 1.2946 -6.7404 -1.9812 41 1 2.7364 -7.6499 -1.2770 42 1 1.3600 -8.2479 0.7679 43 1 -0.0815 -7.3381 0.0637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754433576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:34 Heat of formation + Delta-G solvation = -10.968101 kcal Electronic energy + Delta-G solvation = -21992.265623 eV Core-core repulsion = 18844.578853 eV Total energy + Delta-G solvation = -3147.686771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28566 -39.58759 -38.23735 -36.89480 -35.09854 -33.15788 -32.28695 -29.83455 -29.49018 -26.43955 -25.62539 -23.50876 -23.19261 -21.96680 -21.32676 -21.23516 -19.68236 -19.35598 -18.03216 -17.47250 -17.12416 -16.65949 -16.41230 -16.04767 -15.79262 -15.46727 -15.22960 -14.80511 -14.55662 -13.99167 -13.58316 -12.98419 -12.96147 -12.85726 -12.78179 -12.69921 -12.62005 -12.46507 -12.31239 -12.08383 -11.99505 -11.89754 -11.69725 -11.42809 -11.30222 -11.08994 -10.98882 -10.64935 -9.95636 -9.80421 -9.15455 -8.41289 -5.36354 1.36775 1.58766 1.68507 1.69660 1.84902 2.17288 2.70032 2.97652 3.39059 3.47628 3.63733 3.71379 3.83587 3.96680 3.99718 4.02661 4.09778 4.24518 4.33966 4.37726 4.53379 4.54820 4.56778 4.65597 4.73114 4.76289 4.79496 4.95680 4.98013 4.99678 5.02810 5.09486 5.22463 5.27861 5.33587 5.42493 5.53355 5.58468 5.68763 5.95947 6.46287 6.60776 7.04921 7.31422 7.95454 8.06944 9.09695 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.005166 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.910392 B = 5419.272727 C = 7205.296420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.101 4.101 3 Si 1.129 2.871 4 H -0.295 1.295 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.336 4.336 8 H 0.069 0.931 9 N -0.753 5.753 10 C 0.156 3.844 11 C 0.179 3.821 12 H 0.053 0.947 13 N -0.710 5.710 14 C 0.510 3.490 15 O -0.571 6.571 16 C -0.128 4.128 17 C -0.047 4.047 18 H 0.078 0.922 19 C -0.170 4.170 20 C -0.178 4.178 21 C -0.097 4.097 22 C -0.116 4.116 23 C -0.165 4.165 24 C -0.168 4.168 25 C -0.177 4.177 26 H 0.241 0.759 27 H 0.361 0.639 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.407 0.593 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 -15.379 7.980 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.293 4.293 3 Si 0.953 3.047 4 H -0.221 1.221 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.467 4.467 8 H 0.087 0.913 9 N -0.398 5.398 10 C 0.029 3.971 11 C 0.074 3.926 12 H 0.072 0.928 13 N -0.361 5.361 14 C 0.299 3.701 15 O -0.451 6.451 16 C -0.167 4.167 17 C -0.066 4.066 18 H 0.096 0.904 19 C -0.189 4.189 20 C -0.196 4.196 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.185 4.185 24 C -0.205 4.205 25 C -0.214 4.214 26 H 0.052 0.948 27 H 0.193 0.807 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.242 0.758 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.156 -14.182 7.292 16.480 hybrid contribution 0.020 -1.159 -0.374 1.218 sum -4.136 -15.341 6.918 17.330 Atomic orbital electron populations 1.71009 1.07251 1.27702 1.56135 1.27222 0.97025 1.04679 1.00341 0.82619 0.73354 0.71483 0.77219 1.22069 1.19938 1.20619 1.20396 0.92480 0.86918 1.46939 0.91255 1.42512 1.04806 1.01732 1.90789 1.20952 0.93353 0.83674 0.99080 1.20477 0.89583 0.93172 0.89375 0.92837 1.46023 1.14888 1.54887 1.20282 1.21193 0.82028 0.77529 0.89345 1.90586 1.76493 1.42870 1.35199 1.21763 0.94552 1.03537 0.96883 1.20770 0.93062 0.98699 0.94023 0.90362 1.23286 0.96419 1.00035 0.99111 1.23540 0.96504 1.00284 0.99268 1.21404 0.97977 1.01072 0.92884 1.22612 0.93260 1.03541 0.95870 1.22541 1.01852 0.90151 1.03966 1.22965 1.02798 1.02764 0.91973 1.23196 0.99477 0.97459 1.01260 0.94834 0.80722 0.95117 0.94335 0.75788 0.85946 0.88892 0.89054 0.85731 0.89937 0.89769 0.88783 0.90166 0.86257 0.90332 0.86627 0.87635 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.15 13.70 21.65 0.30 -60.85 16 2 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 3 Si 1.13 51.54 29.92 68.60 2.05 53.59 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.34 -18.80 9.99 84.03 0.84 -17.96 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.75 -37.89 5.43 -343.47 -1.87 -39.75 16 10 C 0.16 6.19 5.80 86.38 0.50 6.69 16 11 C 0.18 6.14 2.43 44.99 0.11 6.25 16 12 H 0.05 2.18 7.33 -2.39 -0.02 2.16 16 13 N -0.71 -22.39 4.50 -442.54 -1.99 -24.38 16 14 C 0.51 16.00 6.94 87.66 0.61 16.61 16 15 O -0.57 -21.19 11.82 -3.00 -0.04 -21.22 16 16 C -0.13 -3.05 5.10 29.85 0.15 -2.90 16 17 C -0.05 -1.11 2.53 -10.85 -0.03 -1.14 16 18 H 0.08 1.98 7.96 -2.39 -0.02 1.96 16 19 C -0.17 -4.89 9.23 26.26 0.24 -4.65 16 20 C -0.18 -4.27 10.78 26.26 0.28 -3.99 16 21 C -0.10 -1.72 6.81 30.59 0.21 -1.51 16 22 C -0.12 -1.98 6.72 31.77 0.21 -1.77 16 23 C -0.17 -4.58 5.36 -10.79 -0.06 -4.63 16 24 C -0.17 -4.31 10.18 30.60 0.31 -4.00 16 25 C -0.18 -4.66 9.73 30.60 0.30 -4.37 16 26 H 0.24 15.27 6.77 -92.71 -0.63 14.65 16 27 H 0.36 19.18 6.17 -92.71 -0.57 18.61 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.41 12.09 8.60 -92.71 -0.80 11.29 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.09 3.21 7.44 -2.91 -0.02 3.19 16 34 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.29 7.91 -2.39 -0.02 1.27 16 39 H 0.12 2.93 8.11 -2.39 -0.02 2.91 16 40 H 0.08 2.26 8.05 -2.38 -0.02 2.24 16 41 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.10 3.03 5.02 -2.39 -0.01 3.02 16 Total: -1.00 -69.64 346.31 2.38 -67.26 By element: Atomic # 1 Polarization: 48.34 SS G_CDS: -0.23 Total: 48.11 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.15 Total: -22.75 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -3.56 Total: -124.98 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.22 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.05 Total: 53.59 kcal Total: -69.64 2.38 -67.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.290 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds