Wall clock time and date at job start Tue Mar 31 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47039 * 295.00296 * 11 10 9 13 13 N 1.46505 * 109.47110 * 54.99768 * 11 10 9 14 14 C 1.34776 * 120.00083 * 205.00120 * 13 11 10 15 15 O 1.21276 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99673 * 180.02562 * 14 13 11 17 17 H 1.08997 * 109.63828 * 59.99945 * 16 14 13 18 18 C 1.53025 * 109.64023 * 299.57715 * 16 14 13 19 19 C 1.50159 * 110.09148 * 191.09884 * 18 16 14 20 20 C 1.29445 * 124.15320 * 16.71718 * 19 18 16 21 21 C 1.50077 * 124.07044 * 359.76021 * 20 19 18 22 22 C 1.53025 * 110.14717 * 17.13159 * 21 20 19 23 23 C 1.53002 * 109.47334 * 174.99477 * 11 10 9 24 24 C 1.52993 * 117.50098 * 248.62377 * 23 11 10 25 25 C 1.52995 * 117.49954 * 179.97438 * 23 11 10 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 0.97006 * 119.99476 * 25.00066 * 13 11 10 31 31 H 1.08999 * 109.36036 * 311.08911 * 18 16 14 32 32 H 1.09004 * 109.35649 * 70.67895 * 18 16 14 33 33 H 1.08004 * 117.88704 * 196.92417 * 19 18 16 34 34 H 1.07996 * 117.96869 * 179.78291 * 20 19 18 35 35 H 1.09000 * 109.35689 * 256.92169 * 21 20 19 36 36 H 1.09000 * 109.24423 * 137.26609 * 21 20 19 37 37 H 1.08992 * 109.63829 * 190.87953 * 22 21 20 38 38 H 1.08997 * 109.81680 * 70.35034 * 22 21 20 39 39 H 1.09006 * 115.54809 * 34.33587 * 23 11 10 40 40 H 1.08996 * 117.50086 * 0.02562 * 24 23 11 41 41 H 1.09007 * 117.49681 * 145.02006 * 24 23 11 42 42 H 1.08999 * 117.50446 * 214.98197 * 25 23 11 43 43 H 1.09005 * 117.49767 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4971 -4.8138 0.9289 13 7 0.1446 -4.6758 -1.1340 14 6 -1.0799 -5.2366 -1.0833 15 8 -1.4211 -5.8600 -0.1005 16 6 -2.0251 -5.0890 -2.2477 17 1 -1.5759 -5.5223 -3.1413 18 6 -2.3189 -3.6064 -2.4869 19 6 -3.4560 -3.4556 -3.4559 20 6 -4.2807 -4.4053 -3.7620 21 6 -4.2130 -5.7930 -3.1946 22 6 -3.3447 -5.8054 -1.9345 23 6 1.8246 -6.1412 -0.1281 24 6 1.6646 -6.9271 -1.4309 25 6 1.0019 -7.4310 -0.1467 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.4174 -4.1768 -1.9199 31 1 -2.5880 -3.1343 -1.5420 32 1 -1.4294 -3.1222 -2.8899 33 1 -3.5920 -2.4947 -3.9297 34 1 -5.0662 -4.1854 -4.4698 35 1 -3.7830 -6.4660 -3.9363 36 1 -5.2194 -6.1279 -2.9432 37 1 -3.1418 -6.8349 -1.6397 38 1 -3.8599 -5.2874 -1.1257 39 1 2.7974 -6.1721 0.3626 40 1 1.0178 -6.5026 -2.1986 41 1 2.5325 -7.4752 -1.7978 42 1 1.4338 -8.3104 0.3309 43 1 -0.0815 -7.3381 -0.0698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754433881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:56 Heat of formation + Delta-G solvation = 4.108722 kcal Electronic energy + Delta-G solvation = -22504.401424 eV Core-core repulsion = 19357.368434 eV Total energy + Delta-G solvation = -3147.032991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.36684 -38.26689 -36.75445 -35.11417 -33.47258 -31.64791 -30.93728 -30.49481 -27.88180 -24.08343 -23.70569 -22.85684 -22.31055 -21.69197 -20.32820 -19.66155 -17.95106 -17.44447 -17.03878 -16.08275 -16.03047 -15.43450 -14.77078 -14.27863 -14.03599 -13.80504 -13.64997 -13.56854 -13.30418 -13.00241 -12.79551 -12.40098 -12.19745 -12.04866 -11.64742 -11.50193 -11.25189 -10.98939 -10.75189 -10.73335 -10.62302 -10.34838 -10.21568 -10.00964 -9.73818 -9.42792 -9.19648 -9.00284 -8.93312 -8.68309 -7.05139 -6.12891 -3.13575 2.28607 2.84264 3.41159 3.49978 3.53486 3.70908 4.02182 4.58555 4.63174 4.68298 4.83123 4.90088 5.12211 5.16265 5.16698 5.22515 5.30497 5.40814 5.49439 5.51219 5.56932 5.67941 5.73128 5.79560 5.81582 5.91942 5.92742 5.98273 6.04339 6.12182 6.17231 6.25111 6.30432 6.42603 6.47921 6.62297 6.63014 6.88365 6.93896 7.77316 7.80226 8.48660 8.73007 9.18692 10.05319 10.20157 11.35031 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.005956 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.694062 B = 4700.012837 C = 6448.991527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.742 5.742 10 C 0.154 3.846 11 C 0.166 3.834 12 H 0.089 0.911 13 N -0.710 5.710 14 C 0.519 3.481 15 O -0.542 6.542 16 C -0.106 4.106 17 H 0.094 0.906 18 C -0.085 4.085 19 C -0.142 4.142 20 C -0.167 4.167 21 C -0.089 4.089 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.177 4.177 25 C -0.187 4.187 26 H 0.254 0.746 27 H 0.369 0.631 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.404 0.596 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -13.298 -7.641 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.911 3.089 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.388 5.388 10 C 0.026 3.974 11 C 0.061 3.939 12 H 0.107 0.893 13 N -0.360 5.360 14 C 0.305 3.695 15 O -0.420 6.420 16 C -0.127 4.127 17 H 0.112 0.888 18 C -0.122 4.122 19 C -0.160 4.160 20 C -0.185 4.185 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.180 4.180 24 C -0.214 4.214 25 C -0.223 4.223 26 H 0.066 0.934 27 H 0.202 0.798 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.239 0.761 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.861 -12.057 -6.926 14.431 hybrid contribution 0.235 -1.338 -0.418 1.422 sum -3.626 -13.395 -7.344 15.701 Atomic orbital electron populations 1.70892 1.05998 1.28373 1.53376 1.25764 0.97046 1.00939 1.00339 0.83242 0.74214 0.75624 0.75845 1.21053 1.22291 1.22288 1.20010 0.92013 0.85728 1.48712 0.91776 1.42331 1.04977 1.00675 1.90801 1.20837 0.92956 0.84644 0.98984 1.20754 0.90250 0.92844 0.90017 0.89310 1.46051 1.14676 1.54581 1.20711 1.20566 0.81999 0.78317 0.88576 1.90603 1.76081 1.41545 1.33772 1.21388 0.95947 0.98167 0.97201 0.88806 1.20459 0.98014 0.93920 0.99806 1.22059 0.96379 0.99067 0.98521 1.22024 0.99684 0.95447 1.01316 1.20466 1.00252 0.94948 0.96966 1.21400 0.93693 1.01063 0.97435 1.22682 1.00767 0.92514 1.02074 1.22873 1.02942 1.03987 0.91598 1.23332 1.01575 0.96724 1.00699 0.93438 0.79766 0.95558 0.94873 0.76114 0.89788 0.89997 0.87546 0.88068 0.91076 0.90963 0.90904 0.91071 0.87353 0.89087 0.89520 0.89758 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 3 Si 1.08 25.59 29.92 -169.99 -5.09 20.50 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.33 -9.23 9.99 -15.06 -0.15 -9.38 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -18.09 5.43 -59.91 -0.33 -18.41 16 10 C 0.15 3.01 5.80 -4.05 -0.02 2.99 16 11 C 0.17 2.79 2.59 -67.93 -0.18 2.62 16 12 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 13 N -0.71 -10.94 2.97 -53.80 -0.16 -11.10 16 14 C 0.52 8.03 5.97 -10.98 -0.07 7.96 16 15 O -0.54 -9.86 12.93 5.56 0.07 -9.79 16 16 C -0.11 -1.35 2.57 -91.55 -0.24 -1.58 16 17 H 0.09 1.05 8.13 -51.93 -0.42 0.63 16 18 C -0.08 -1.14 5.30 -28.13 -0.15 -1.29 16 19 C -0.14 -1.72 9.80 -35.86 -0.35 -2.07 16 20 C -0.17 -1.79 9.80 -35.90 -0.35 -2.15 16 21 C -0.09 -0.89 6.12 -28.17 -0.17 -1.07 16 22 C -0.10 -1.19 4.69 -26.51 -0.12 -1.32 16 23 C -0.16 -2.31 5.71 -90.62 -0.52 -2.82 16 24 C -0.18 -2.28 9.73 -26.71 -0.26 -2.54 16 25 C -0.19 -2.59 9.82 -26.71 -0.26 -2.86 16 26 H 0.25 7.63 6.77 -40.82 -0.28 7.35 16 27 H 0.37 9.30 6.17 -40.82 -0.25 9.05 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.40 6.03 8.30 -40.82 -0.34 5.69 16 31 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 33 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 38 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 39 H 0.11 1.46 8.11 -51.93 -0.42 1.03 16 40 H 0.09 1.18 6.67 -51.93 -0.35 0.83 16 41 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -31.11 341.25 -9.50 -40.61 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -6.96 Total: 15.67 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.94 Total: -14.82 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.27 Total: -57.32 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.11 -9.50 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.716 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds