Wall clock time and date at job start Tue Mar 31 2020 00:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47039 * 295.00296 * 11 10 9 13 13 N 1.46505 * 109.47110 * 54.99768 * 11 10 9 14 14 C 1.34776 * 120.00083 * 205.00120 * 13 11 10 15 15 O 1.21276 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99673 * 180.02562 * 14 13 11 17 17 H 1.08997 * 109.63828 * 59.99945 * 16 14 13 18 18 C 1.53025 * 109.64023 * 299.57715 * 16 14 13 19 19 C 1.50159 * 110.09148 * 191.09884 * 18 16 14 20 20 C 1.29445 * 124.15320 * 16.71718 * 19 18 16 21 21 C 1.50077 * 124.07044 * 359.76021 * 20 19 18 22 22 C 1.53025 * 110.14717 * 17.13159 * 21 20 19 23 23 C 1.53002 * 109.47334 * 174.99477 * 11 10 9 24 24 C 1.52993 * 117.50098 * 248.62377 * 23 11 10 25 25 C 1.52995 * 117.49954 * 179.97438 * 23 11 10 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 0.97006 * 119.99476 * 25.00066 * 13 11 10 31 31 H 1.08999 * 109.36036 * 311.08911 * 18 16 14 32 32 H 1.09004 * 109.35649 * 70.67895 * 18 16 14 33 33 H 1.08004 * 117.88704 * 196.92417 * 19 18 16 34 34 H 1.07996 * 117.96869 * 179.78291 * 20 19 18 35 35 H 1.09000 * 109.35689 * 256.92169 * 21 20 19 36 36 H 1.09000 * 109.24423 * 137.26609 * 21 20 19 37 37 H 1.08992 * 109.63829 * 190.87953 * 22 21 20 38 38 H 1.08997 * 109.81680 * 70.35034 * 22 21 20 39 39 H 1.09006 * 115.54809 * 34.33587 * 23 11 10 40 40 H 1.08996 * 117.50086 * 0.02562 * 24 23 11 41 41 H 1.09007 * 117.49681 * 145.02006 * 24 23 11 42 42 H 1.08999 * 117.50446 * 214.98197 * 25 23 11 43 43 H 1.09005 * 117.49767 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.4971 -4.8138 0.9289 13 7 0.1446 -4.6758 -1.1340 14 6 -1.0799 -5.2366 -1.0833 15 8 -1.4211 -5.8600 -0.1005 16 6 -2.0251 -5.0890 -2.2477 17 1 -1.5759 -5.5223 -3.1413 18 6 -2.3189 -3.6064 -2.4869 19 6 -3.4560 -3.4556 -3.4559 20 6 -4.2807 -4.4053 -3.7620 21 6 -4.2130 -5.7930 -3.1946 22 6 -3.3447 -5.8054 -1.9345 23 6 1.8246 -6.1412 -0.1281 24 6 1.6646 -6.9271 -1.4309 25 6 1.0019 -7.4310 -0.1467 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.4174 -4.1768 -1.9199 31 1 -2.5880 -3.1343 -1.5420 32 1 -1.4294 -3.1222 -2.8899 33 1 -3.5920 -2.4947 -3.9297 34 1 -5.0662 -4.1854 -4.4698 35 1 -3.7830 -6.4660 -3.9363 36 1 -5.2194 -6.1279 -2.9432 37 1 -3.1418 -6.8349 -1.6397 38 1 -3.8599 -5.2874 -1.1257 39 1 2.7974 -6.1721 0.3626 40 1 1.0178 -6.5026 -2.1986 41 1 2.5325 -7.4752 -1.7978 42 1 1.4338 -8.3104 0.3309 43 1 -0.0815 -7.3381 -0.0698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754433881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:55 Heat of formation + Delta-G solvation = -13.760576 kcal Electronic energy + Delta-G solvation = -22505.176295 eV Core-core repulsion = 19357.368434 eV Total energy + Delta-G solvation = -3147.807861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61252 -39.36910 -37.98580 -36.83114 -34.97204 -33.20912 -32.11213 -31.64345 -29.50860 -25.84724 -25.01445 -23.91789 -23.58249 -23.07739 -21.52938 -20.94194 -19.41104 -18.91270 -18.31819 -17.44612 -17.27117 -16.67414 -16.16465 -15.82053 -15.59148 -15.24851 -14.99225 -14.73984 -14.54767 -14.38840 -13.97257 -13.73016 -13.20487 -13.18062 -13.06848 -12.87219 -12.64219 -12.57514 -12.32462 -12.02274 -11.89558 -11.72472 -11.43261 -11.33814 -11.22115 -10.98137 -10.87448 -10.65867 -10.01192 -9.91795 -9.13062 -8.38694 -5.33826 1.37863 1.58069 1.59397 1.68903 1.85188 2.16277 2.70429 2.90084 3.40990 3.47755 3.58699 3.67423 3.82743 3.87943 4.02974 4.04893 4.16150 4.24223 4.35519 4.37665 4.38504 4.42898 4.56278 4.59903 4.68282 4.78255 4.78673 4.88421 4.98014 5.01578 5.03615 5.06250 5.20069 5.23297 5.31320 5.34707 5.51882 5.59538 5.73214 6.02599 6.48882 6.52097 7.07116 7.21832 7.97525 8.09060 9.12095 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.005956 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.694062 B = 4700.012837 C = 6448.991527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.101 4.101 3 Si 1.128 2.872 4 H -0.295 1.295 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.068 0.932 9 N -0.752 5.752 10 C 0.157 3.843 11 C 0.178 3.822 12 H 0.058 0.942 13 N -0.706 5.706 14 C 0.516 3.484 15 O -0.571 6.571 16 C -0.097 4.097 17 H 0.119 0.881 18 C -0.079 4.079 19 C -0.167 4.167 20 C -0.149 4.149 21 C -0.087 4.087 22 C -0.096 4.096 23 C -0.171 4.171 24 C -0.159 4.159 25 C -0.187 4.187 26 H 0.242 0.758 27 H 0.361 0.639 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.407 0.593 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -14.489 -9.342 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.292 4.292 3 Si 0.953 3.047 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.086 0.914 9 N -0.397 5.397 10 C 0.030 3.970 11 C 0.072 3.928 12 H 0.076 0.924 13 N -0.356 5.356 14 C 0.304 3.696 15 O -0.451 6.451 16 C -0.118 4.118 17 H 0.137 0.863 18 C -0.116 4.116 19 C -0.185 4.185 20 C -0.167 4.167 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.191 4.191 24 C -0.196 4.196 25 C -0.224 4.224 26 H 0.052 0.948 27 H 0.193 0.807 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.243 0.757 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.080 -13.290 -8.639 16.147 hybrid contribution -0.003 -1.046 0.152 1.057 sum -3.082 -14.335 -8.486 16.942 Atomic orbital electron populations 1.71004 1.07159 1.27732 1.56026 1.27167 0.97072 1.04557 1.00441 0.82620 0.73341 0.71615 0.77125 1.22139 1.20714 1.20081 1.20365 0.92413 0.86901 1.46934 0.91363 1.42496 1.04793 1.01669 1.90777 1.20939 0.93329 0.83646 0.99114 1.20454 0.89645 0.93364 0.89295 0.92427 1.46002 1.14728 1.54553 1.20323 1.21077 0.82007 0.77505 0.88980 1.90592 1.76513 1.42890 1.35106 1.21390 0.95756 0.97867 0.96759 0.86326 1.20327 0.98556 0.94046 0.98688 1.21997 0.96958 1.00036 0.99513 1.22300 0.98870 0.95238 1.00325 1.20525 1.00794 0.94964 0.96058 1.21382 0.93476 1.00441 0.98132 1.22600 1.01060 0.91190 1.04205 1.22962 1.03275 1.02616 0.90736 1.23276 1.00340 0.96882 1.01917 0.94760 0.80691 0.94395 0.94976 0.75715 0.93156 0.90790 0.87332 0.85851 0.88907 0.89246 0.90937 0.93347 0.86066 0.89167 0.87163 0.87959 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.41 13.70 21.65 0.30 -60.11 16 2 C -0.10 -5.79 5.50 84.86 0.47 -5.32 16 3 Si 1.13 51.41 29.92 68.60 2.05 53.47 16 4 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.33 -18.57 9.99 84.03 0.84 -17.73 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.75 -37.37 5.43 -343.47 -1.87 -39.24 16 10 C 0.16 6.13 5.80 86.38 0.50 6.63 16 11 C 0.18 6.05 2.59 44.99 0.12 6.17 16 12 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 13 N -0.71 -22.10 2.97 -442.53 -1.31 -23.41 16 14 C 0.52 16.34 5.97 87.66 0.52 16.86 16 15 O -0.57 -21.51 12.93 -3.02 -0.04 -21.55 16 16 C -0.10 -2.45 2.57 -11.40 -0.03 -2.47 16 17 H 0.12 2.43 8.13 -2.39 -0.02 2.41 16 18 C -0.08 -2.19 5.30 29.69 0.16 -2.04 16 19 C -0.17 -3.95 9.80 27.06 0.27 -3.68 16 20 C -0.15 -2.89 9.80 27.04 0.27 -2.62 16 21 C -0.09 -1.51 6.12 29.66 0.18 -1.33 16 22 C -0.10 -2.29 4.69 30.73 0.14 -2.14 16 23 C -0.17 -4.71 5.71 -10.80 -0.06 -4.77 16 24 C -0.16 -3.71 9.73 30.61 0.30 -3.41 16 25 C -0.19 -4.96 9.82 30.61 0.30 -4.66 16 26 H 0.24 15.13 6.77 -92.71 -0.63 14.50 16 27 H 0.36 18.95 6.17 -92.71 -0.57 18.38 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.41 12.23 8.30 -92.70 -0.77 11.46 16 31 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.07 2.12 7.91 -2.39 -0.02 2.10 16 33 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.73 7.90 -2.39 -0.02 1.71 16 38 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 39 H 0.12 3.03 8.11 -2.38 -0.02 3.01 16 40 H 0.09 2.13 6.67 -2.39 -0.02 2.12 16 41 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.09 3.00 5.02 -2.38 -0.01 2.99 16 Total: -1.00 -67.88 341.25 2.90 -64.97 By element: Atomic # 1 Polarization: 46.58 SS G_CDS: -0.20 Total: 46.38 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.97 Total: -20.51 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -2.88 Total: -122.76 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.04 Total: -21.55 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.47 kcal Total: -67.88 2.90 -64.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754433881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.213 kcal (2) G-P(sol) polarization free energy of solvation -67.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds