Wall clock time and date at job start Tue Mar 31 2020 00:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00211 * 2 1 4 4 H 1.48497 * 109.47148 * 270.00144 * 3 2 1 5 5 H 1.48504 * 109.47149 * 29.99682 * 3 2 1 6 6 H 1.48494 * 109.47200 * 149.99897 * 3 2 1 7 7 C 1.38820 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99579 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47191 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47083 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.89345 * 302.57609 * 12 11 10 14 14 C 1.55167 * 111.03632 * 178.66894 * 12 11 10 15 15 C 1.54310 * 102.86178 * 206.21664 * 14 12 11 16 16 N 1.47025 * 107.27848 * 22.52822 * 15 14 12 17 17 C 1.34777 * 125.64721 * 180.96264 * 16 15 14 18 18 O 1.21613 * 119.99910 * 179.69197 * 17 16 15 19 19 C 1.47104 * 120.00058 * 359.69916 * 17 16 15 20 20 C 1.32991 * 119.99556 * 180.27387 * 19 17 16 21 21 C 1.51397 * 136.32047 * 359.35044 * 20 19 17 22 22 C 1.53376 * 87.51951 * 206.05666 * 21 20 19 23 23 C 1.51410 * 136.31035 * 179.72208 * 20 19 17 24 24 C 1.47419 * 108.70344 * 0.70275 * 16 15 14 25 25 H 0.96994 * 120.00306 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00446 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46833 * 60.00142 * 10 9 7 28 28 H 1.08998 * 109.47512 * 300.00018 * 10 9 7 29 29 H 1.09008 * 109.46629 * 60.00101 * 11 10 9 30 30 H 1.08998 * 109.47090 * 300.00501 * 11 10 9 31 31 H 1.09001 * 110.71683 * 324.77777 * 14 12 11 32 32 H 1.08999 * 110.71476 * 87.87288 * 14 12 11 33 33 H 1.08998 * 109.98848 * 263.04979 * 15 14 12 34 34 H 1.09003 * 109.77158 * 141.88673 * 15 14 12 35 35 H 1.08002 * 119.99781 * 359.97438 * 19 17 16 36 36 H 1.09003 * 113.56158 * 320.63815 * 21 20 19 37 37 H 1.09001 * 113.56419 * 91.37121 * 21 20 19 38 38 H 1.09004 * 113.96909 * 220.28874 * 22 21 20 39 39 H 1.09001 * 113.70936 * 88.80494 * 22 21 20 40 40 H 1.09004 * 113.55954 * 268.62375 * 23 20 19 41 41 H 1.08997 * 113.56377 * 39.36328 * 23 20 19 42 42 H 1.09003 * 110.36813 * 94.93308 * 24 16 15 43 43 H 1.08992 * 110.36969 * 217.26144 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8198 -0.0008 12 6 1.8288 -6.1447 -0.0026 13 1 2.4967 -6.2068 -0.8617 14 6 0.8535 -7.3511 0.0319 15 6 1.7012 -8.4595 0.6906 16 7 2.7655 -7.7969 1.4586 17 6 3.7286 -8.4206 2.1658 18 8 4.5649 -7.7685 2.7610 19 6 3.7681 -9.8902 2.2176 20 6 4.7152 -10.5055 2.9199 21 6 5.8992 -10.0854 3.7647 22 6 6.5337 -11.4412 3.4306 23 6 5.0944 -11.9391 3.2259 24 6 2.6087 -6.3375 1.3220 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0002 27 1 2.6853 -3.7149 0.8878 28 1 2.6840 -3.7142 -0.8921 29 1 0.4361 -4.7618 -0.8901 30 1 0.4381 -4.7622 0.8899 31 1 -0.0237 -7.1206 0.6365 32 1 0.5597 -7.6383 -0.9777 33 1 2.1399 -9.0982 -0.0759 34 1 1.0770 -9.0534 1.3584 35 1 3.0252 -10.4693 1.6893 36 1 6.4474 -9.2369 3.3553 37 1 5.6598 -9.9649 4.8213 38 1 7.0463 -11.9094 4.2711 39 1 7.1306 -11.4329 2.5186 40 1 4.6341 -12.3270 4.1346 41 1 4.9826 -12.6105 2.3746 42 1 2.0379 -5.9371 2.1599 43 1 3.5842 -5.8551 1.2614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754908950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:22 Heat of formation + Delta-G solvation = 9.584968 kcal Electronic energy + Delta-G solvation = -20907.131245 eV Core-core repulsion = 17760.335722 eV Total energy + Delta-G solvation = -3146.795523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21454 -38.94484 -37.50629 -35.09405 -32.99478 -31.34141 -30.68555 -29.48320 -27.13734 -26.07748 -24.68992 -23.25809 -22.77571 -21.25812 -20.28267 -19.79429 -17.98775 -17.29600 -17.05182 -16.24445 -15.87301 -15.46471 -14.78674 -14.75922 -14.53281 -13.92003 -13.51351 -13.29035 -13.09764 -12.88082 -12.78912 -12.71091 -12.28088 -12.19981 -11.94472 -11.64232 -11.37788 -11.25667 -11.04116 -10.81674 -10.79776 -10.62349 -10.42840 -10.31766 -9.95861 -9.75782 -9.63684 -9.45930 -8.82859 -8.62871 -6.87860 -5.72821 -3.01129 1.15921 2.92093 3.22877 3.46881 3.51861 3.53946 3.98598 4.16719 4.41749 4.49011 4.53929 4.64633 4.77015 4.82096 4.90440 5.13317 5.18894 5.29196 5.32289 5.35788 5.45453 5.48804 5.55814 5.61047 5.67120 5.70799 5.83987 5.86423 5.89654 5.95000 5.97539 6.12791 6.22253 6.28290 6.36641 6.40560 6.46081 6.88464 6.92531 7.50460 7.74479 8.17210 8.46576 9.57437 10.15927 10.50495 11.50307 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029135 B = 0.002750 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.808568 B =10180.264355 C =10985.393989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.114 4.114 12 C -0.095 4.095 13 H 0.084 0.916 14 C -0.129 4.129 15 C 0.102 3.898 16 N -0.617 5.617 17 C 0.563 3.437 18 O -0.542 6.542 19 C -0.194 4.194 20 C -0.065 4.065 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.108 4.108 24 C 0.111 3.889 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -27.339 3.503 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.167 4.167 15 C -0.022 4.022 16 N -0.351 5.351 17 C 0.354 3.646 18 O -0.421 6.421 19 C -0.215 4.215 20 C -0.066 4.066 21 C -0.143 4.143 22 C -0.180 4.180 23 C -0.145 4.145 24 C -0.011 4.011 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.237 -26.906 3.878 27.890 hybrid contribution -0.053 0.900 -0.159 0.915 sum 6.184 -26.006 3.719 26.989 Atomic orbital electron populations 1.69659 1.05107 1.25598 1.58050 1.24749 0.95553 0.97717 1.03174 0.86176 0.78684 0.83795 0.77499 1.21740 1.21771 1.20738 1.19254 0.91069 0.84222 1.42327 0.91191 1.42371 1.05867 1.00107 1.89504 1.20685 0.93578 0.85563 0.97851 1.21680 0.98555 0.92503 1.02516 1.22348 0.96872 0.94954 0.97257 0.89736 1.22728 0.98128 0.94377 1.01453 1.22048 0.89099 0.96076 0.94927 1.48420 1.28846 1.08054 1.49761 1.18068 0.80163 0.87815 0.78555 1.90789 1.38702 1.67595 1.44981 1.21587 1.00567 0.93052 1.06301 1.23479 0.92484 0.97687 0.92990 1.22226 0.94128 0.98171 0.99809 1.22732 0.95660 0.97192 1.02423 1.22351 0.96303 0.93369 1.02449 1.22384 1.01433 0.79656 0.97641 0.93562 0.78335 0.96245 0.96456 0.91307 0.91590 0.90185 0.89912 0.91479 0.91502 0.85138 0.89436 0.88401 0.90391 0.89724 0.88126 0.90425 0.91016 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.84 13.06 55.49 0.72 -28.12 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.17 5.60 -59.90 -0.34 -19.50 16 10 C 0.15 3.09 6.11 -4.04 -0.02 3.06 16 11 C -0.11 -1.78 4.85 -26.73 -0.13 -1.91 16 12 C -0.09 -1.18 3.07 -88.46 -0.27 -1.46 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 14 C -0.13 -1.22 6.42 -24.90 -0.16 -1.38 16 15 C 0.10 0.92 6.06 -3.07 -0.02 0.91 16 16 N -0.62 -7.85 3.33 -171.92 -0.57 -8.42 16 17 C 0.56 7.90 7.80 -12.66 -0.10 7.80 16 18 O -0.54 -9.56 15.41 5.27 0.08 -9.48 16 19 C -0.19 -2.04 9.54 -37.81 -0.36 -2.40 16 20 C -0.06 -0.62 6.93 -100.49 -0.70 -1.32 16 21 C -0.11 -1.02 6.98 -27.56 -0.19 -1.21 16 22 C -0.14 -0.96 8.17 -26.20 -0.21 -1.17 16 23 C -0.11 -0.69 7.96 -27.40 -0.22 -0.91 16 24 C 0.11 1.56 5.57 -2.53 -0.01 1.54 16 25 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.38 10.39 7.67 -40.82 -0.31 10.07 16 27 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.13 1.02 7.38 -52.49 -0.39 0.63 16 36 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 43 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -34.02 351.02 -9.82 -43.85 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.34 Total: 4.49 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.64 Total: -6.04 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.18 Total: -56.04 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.02 -9.82 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754908950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.430 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds