Wall clock time and date at job start Tue Mar 31 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00431 * 2 1 4 4 H 1.48497 * 109.47228 * 270.00269 * 3 2 1 5 5 H 1.48499 * 109.46828 * 30.00261 * 3 2 1 6 6 H 1.48502 * 109.47200 * 150.00174 * 3 2 1 7 7 C 1.38815 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99738 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61053 * 272.49703 * 11 10 9 13 13 C 1.53788 * 87.07846 * 220.01775 * 12 11 10 14 14 N 1.46499 * 113.61296 * 139.98232 * 13 12 11 15 15 C 1.34773 * 120.00058 * 107.50273 * 14 13 12 16 16 O 1.21281 * 120.00388 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00108 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.64142 * 299.58442 * 17 15 14 19 19 C 1.53029 * 109.63819 * 60.00280 * 17 15 14 20 20 C 1.50070 * 110.14446 * 169.12258 * 19 17 15 21 21 C 1.29446 * 124.07672 * 342.86466 * 20 19 17 22 22 C 1.50066 * 124.07173 * 0.49298 * 21 20 19 23 23 C 1.53041 * 110.14541 * 342.83297 * 22 21 20 24 24 C 1.53781 * 113.61399 * 174.99933 * 11 10 9 25 25 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 28 28 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 29 29 H 1.08998 * 112.85254 * 43.80385 * 11 10 9 30 30 H 1.08995 * 113.61917 * 334.56530 * 12 11 10 31 31 H 1.08995 * 113.61487 * 105.47453 * 12 11 10 32 32 H 1.09001 * 113.61670 * 270.88588 * 13 12 11 33 33 H 0.97002 * 120.00008 * 287.50061 * 14 13 12 34 34 H 1.08996 * 109.35658 * 289.32388 * 19 17 15 35 35 H 1.08997 * 109.35976 * 49.05253 * 19 17 15 36 36 H 1.08000 * 117.96224 * 162.89138 * 20 19 17 37 37 H 1.07997 * 117.96584 * 180.47234 * 21 20 19 38 38 H 1.09007 * 109.35850 * 103.05883 * 22 21 20 39 39 H 1.09003 * 109.36146 * 222.63295 * 22 21 20 40 40 H 1.08997 * 109.65725 * 289.77616 * 23 22 21 41 41 H 1.08999 * 109.63468 * 169.14026 * 23 22 21 42 42 H 1.08996 * 113.61569 * 254.53055 * 24 11 10 43 43 H 1.09002 * 113.61354 * 25.43545 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.2107 -2.0186 -1.4088 13 6 7.4240 -2.8207 -0.9095 14 7 7.9451 -3.7711 -1.8950 15 6 9.1147 -3.5234 -2.5172 16 8 9.7361 -2.5139 -2.2608 17 6 9.6510 -4.5014 -3.5307 18 1 9.8139 -5.4688 -3.0557 19 6 8.6501 -4.6537 -4.6782 20 6 9.2763 -5.4098 -5.8132 21 6 10.5514 -5.5842 -5.9525 22 6 11.5810 -5.0637 -4.9928 23 6 10.9721 -3.9753 -4.1058 24 6 6.4784 -3.4590 0.1218 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3622 -0.0014 27 1 3.8491 -3.0424 0.8891 28 1 3.8484 -3.0428 -0.8908 29 1 5.9000 -1.4014 0.6942 30 1 5.6424 -2.5263 -2.1882 31 1 6.4446 -0.9841 -1.6600 32 1 8.2029 -2.2021 -0.4635 33 1 7.4484 -4.5787 -2.0998 34 1 7.7734 -5.1954 -4.3233 35 1 8.3480 -3.6664 -5.0275 36 1 8.6225 -5.8344 -6.5606 37 1 10.8956 -6.1390 -6.8128 38 1 11.9383 -5.8820 -4.3674 39 1 12.4186 -4.6472 -5.5523 40 1 10.7830 -3.0813 -4.7000 41 1 11.6581 -3.7397 -3.2921 42 1 6.9284 -3.5873 1.1062 43 1 5.9833 -4.3604 -0.2392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755205901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:57 Heat of formation + Delta-G solvation = -5.737531 kcal Electronic energy + Delta-G solvation = -21186.171193 eV Core-core repulsion = 18038.711237 eV Total energy + Delta-G solvation = -3147.459956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55284 -39.01783 -37.59212 -34.73422 -33.43241 -31.61562 -31.19076 -30.89088 -27.21190 -25.60879 -24.55426 -23.49763 -22.54746 -21.20688 -20.49397 -19.50571 -18.27962 -17.55772 -17.41385 -16.39354 -15.78145 -15.30333 -15.00788 -14.49546 -14.43830 -14.03795 -13.81485 -13.56480 -13.44780 -13.23619 -12.72526 -12.60370 -12.56288 -12.37350 -11.96001 -11.80240 -11.51872 -11.33425 -11.12680 -10.93907 -10.81280 -10.68156 -10.28515 -10.24153 -9.99003 -9.72245 -9.56753 -9.36221 -9.04909 -8.86306 -7.20603 -5.75617 -3.10572 1.92907 2.49256 3.06444 3.39486 3.42918 3.47083 4.24164 4.31294 4.47778 4.60822 4.61822 4.68330 4.84347 4.86015 4.94148 4.95293 5.00063 5.07674 5.18100 5.28682 5.49547 5.51952 5.56620 5.58550 5.63454 5.75795 5.81152 5.84215 5.86874 5.93061 5.97519 6.08617 6.18871 6.26118 6.28087 6.54716 6.57607 6.69084 6.81012 7.39937 8.00946 8.10898 8.43821 9.23412 9.96065 10.16346 11.42926 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029910 B = 0.002940 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.903239 B = 9521.690659 C = 9659.903767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.170 3.830 11 C -0.117 4.117 12 C -0.141 4.141 13 C 0.117 3.883 14 N -0.717 5.717 15 C 0.517 3.483 16 O -0.541 6.541 17 C -0.108 4.108 18 H 0.098 0.902 19 C -0.083 4.083 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.093 4.093 23 C -0.100 4.100 24 C -0.136 4.136 25 H 0.259 0.741 26 H 0.361 0.639 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.181 -13.593 -8.960 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.043 3.957 11 C -0.136 4.136 12 C -0.180 4.180 13 C 0.013 3.987 14 N -0.367 5.367 15 C 0.303 3.697 16 O -0.418 6.418 17 C -0.129 4.129 18 H 0.116 0.884 19 C -0.120 4.120 20 C -0.172 4.172 21 C -0.175 4.175 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.174 4.174 25 H 0.069 0.931 26 H 0.194 0.806 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.395 -12.948 -8.772 28.141 hybrid contribution 0.127 0.782 -0.179 0.812 sum 23.522 -12.166 -8.950 27.954 Atomic orbital electron populations 1.69703 1.05117 1.25813 1.57723 1.24679 0.95252 0.97250 1.02097 0.86531 0.79216 0.84899 0.77804 1.21081 1.21750 1.20298 1.19068 0.80731 0.94697 1.42865 0.89294 1.42709 1.03985 1.02326 1.91097 1.20578 0.87482 0.89241 0.98420 1.22592 0.96282 0.97551 0.97162 1.23486 0.95999 1.00803 0.97702 1.22648 0.94852 0.91688 0.89543 1.46079 1.22851 1.25364 1.42425 1.20651 0.80671 0.86924 0.81446 1.90697 1.58510 1.28116 1.64474 1.21422 0.97293 0.99178 0.95043 0.88363 1.20433 0.97371 1.01000 0.93208 1.21997 0.96137 1.00162 0.98867 1.22092 0.94769 1.00839 0.99751 1.20508 0.97368 0.98269 0.96845 1.21425 0.94913 0.98077 0.99349 1.23318 0.96733 0.98430 0.98956 0.93083 0.80642 0.95534 0.95513 0.89014 0.89520 0.91349 0.87005 0.76539 0.90340 0.90136 0.87520 0.87874 0.90782 0.90694 0.91064 0.90645 0.90923 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.71 13.97 55.49 0.78 -28.94 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.48 27.73 -169.99 -4.71 17.77 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 N -0.76 -18.14 5.41 -59.90 -0.32 -18.46 16 10 C 0.17 3.21 6.10 -4.04 -0.02 3.19 16 11 C -0.12 -1.71 3.75 -89.81 -0.34 -2.05 16 12 C -0.14 -1.94 7.43 -25.91 -0.19 -2.14 16 13 C 0.12 1.38 4.24 -67.11 -0.28 1.10 16 14 N -0.72 -7.11 5.26 -53.01 -0.28 -7.39 16 15 C 0.52 5.84 7.14 -10.98 -0.08 5.77 16 16 O -0.54 -8.34 15.50 5.56 0.09 -8.25 16 17 C -0.11 -0.89 2.58 -91.55 -0.24 -1.13 16 18 H 0.10 0.67 8.13 -51.93 -0.42 0.25 16 19 C -0.08 -0.61 5.27 -28.17 -0.15 -0.76 16 20 C -0.15 -1.08 9.80 -35.90 -0.35 -1.43 16 21 C -0.16 -1.06 9.80 -35.90 -0.35 -1.41 16 22 C -0.09 -0.62 6.12 -28.17 -0.17 -0.79 16 23 C -0.10 -0.86 4.70 -26.51 -0.12 -0.98 16 24 C -0.14 -1.52 7.39 -25.92 -0.19 -1.71 16 25 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 26 H 0.36 8.51 5.53 -40.82 -0.23 8.28 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.19 7.90 -51.93 -0.41 0.78 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.47 7.47 -51.93 -0.39 1.09 16 33 H 0.40 2.94 8.40 -40.82 -0.34 2.59 16 34 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -33.81 345.58 -9.25 -43.05 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.25 Total: 6.52 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.75 Total: -9.50 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.17 Total: -54.79 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.81 -9.25 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.317 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds