Wall clock time and date at job start Tue Mar 31 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00431 * 2 1 4 4 H 1.48497 * 109.47228 * 270.00269 * 3 2 1 5 5 H 1.48499 * 109.46828 * 30.00261 * 3 2 1 6 6 H 1.48502 * 109.47200 * 150.00174 * 3 2 1 7 7 C 1.38815 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99738 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61053 * 272.49703 * 11 10 9 13 13 C 1.53788 * 87.07846 * 220.01775 * 12 11 10 14 14 N 1.46499 * 113.61296 * 139.98232 * 13 12 11 15 15 C 1.34773 * 120.00058 * 107.50273 * 14 13 12 16 16 O 1.21281 * 120.00388 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00108 * 179.97438 * 15 14 13 18 18 H 1.08994 * 109.64142 * 299.58442 * 17 15 14 19 19 C 1.53029 * 109.63819 * 60.00280 * 17 15 14 20 20 C 1.50070 * 110.14446 * 169.12258 * 19 17 15 21 21 C 1.29446 * 124.07672 * 342.86466 * 20 19 17 22 22 C 1.50066 * 124.07173 * 0.49298 * 21 20 19 23 23 C 1.53041 * 110.14541 * 342.83297 * 22 21 20 24 24 C 1.53781 * 113.61399 * 174.99933 * 11 10 9 25 25 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 28 28 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 29 29 H 1.08998 * 112.85254 * 43.80385 * 11 10 9 30 30 H 1.08995 * 113.61917 * 334.56530 * 12 11 10 31 31 H 1.08995 * 113.61487 * 105.47453 * 12 11 10 32 32 H 1.09001 * 113.61670 * 270.88588 * 13 12 11 33 33 H 0.97002 * 120.00008 * 287.50061 * 14 13 12 34 34 H 1.08996 * 109.35658 * 289.32388 * 19 17 15 35 35 H 1.08997 * 109.35976 * 49.05253 * 19 17 15 36 36 H 1.08000 * 117.96224 * 162.89138 * 20 19 17 37 37 H 1.07997 * 117.96584 * 180.47234 * 21 20 19 38 38 H 1.09007 * 109.35850 * 103.05883 * 22 21 20 39 39 H 1.09003 * 109.36146 * 222.63295 * 22 21 20 40 40 H 1.08997 * 109.65725 * 289.77616 * 23 22 21 41 41 H 1.08999 * 109.63468 * 169.14026 * 23 22 21 42 42 H 1.08996 * 113.61569 * 254.53055 * 24 11 10 43 43 H 1.09002 * 113.61354 * 25.43545 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.2107 -2.0186 -1.4088 13 6 7.4240 -2.8207 -0.9095 14 7 7.9451 -3.7711 -1.8950 15 6 9.1147 -3.5234 -2.5172 16 8 9.7361 -2.5139 -2.2608 17 6 9.6510 -4.5014 -3.5307 18 1 9.8139 -5.4688 -3.0557 19 6 8.6501 -4.6537 -4.6782 20 6 9.2763 -5.4098 -5.8132 21 6 10.5514 -5.5842 -5.9525 22 6 11.5810 -5.0637 -4.9928 23 6 10.9721 -3.9753 -4.1058 24 6 6.4784 -3.4590 0.1218 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3622 -0.0014 27 1 3.8491 -3.0424 0.8891 28 1 3.8484 -3.0428 -0.8908 29 1 5.9000 -1.4014 0.6942 30 1 5.6424 -2.5263 -2.1882 31 1 6.4446 -0.9841 -1.6600 32 1 8.2029 -2.2021 -0.4635 33 1 7.4484 -4.5787 -2.0998 34 1 7.7734 -5.1954 -4.3233 35 1 8.3480 -3.6664 -5.0275 36 1 8.6225 -5.8344 -6.5606 37 1 10.8956 -6.1390 -6.8128 38 1 11.9383 -5.8820 -4.3674 39 1 12.4186 -4.6472 -5.5523 40 1 10.7830 -3.0813 -4.7000 41 1 11.6581 -3.7397 -3.2921 42 1 6.9284 -3.5873 1.1062 43 1 5.9833 -4.3604 -0.2392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755205901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:56 Heat of formation + Delta-G solvation = -27.825059 kcal Electronic energy + Delta-G solvation = -21187.128980 eV Core-core repulsion = 18038.711237 eV Total energy + Delta-G solvation = -3148.417743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44325 -39.97644 -38.39466 -36.48059 -34.63649 -33.26802 -32.11017 -31.60679 -28.79992 -26.63556 -25.54887 -24.50726 -23.79449 -22.54311 -21.40022 -20.69151 -19.50055 -18.85407 -18.19248 -17.39614 -16.71406 -16.53461 -16.18359 -15.89951 -15.58709 -15.18452 -14.79146 -14.72561 -14.60697 -14.28184 -13.96839 -13.67830 -13.37450 -13.32193 -13.18769 -13.06947 -12.96766 -12.76867 -12.17237 -12.07649 -11.94505 -11.86286 -11.71539 -11.44590 -11.33216 -11.26835 -10.94504 -10.63890 -9.98874 -9.86776 -9.28387 -8.03972 -5.36510 1.37009 1.39625 1.42525 1.47067 1.61273 2.22841 2.47214 3.27488 3.47539 3.54454 3.60515 3.72874 3.81793 3.89092 3.93239 4.07957 4.21046 4.29532 4.40824 4.47992 4.55626 4.61802 4.62235 4.73375 4.81700 4.87668 4.92520 4.95086 4.98723 5.05703 5.06396 5.12023 5.21857 5.27537 5.33742 5.43173 5.65135 5.75473 5.77968 6.07044 6.20831 6.59084 7.07687 7.27174 7.85498 8.03434 9.17685 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029910 B = 0.002940 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.903239 B = 9521.690659 C = 9659.903767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.253 1.253 7 C -0.234 4.234 8 H 0.058 0.942 9 N -0.760 5.760 10 C 0.167 3.833 11 C -0.118 4.118 12 C -0.143 4.143 13 C 0.126 3.874 14 N -0.705 5.705 15 C 0.514 3.486 16 O -0.587 6.587 17 C -0.100 4.100 18 H 0.121 0.879 19 C -0.081 4.081 20 C -0.163 4.163 21 C -0.159 4.159 22 C -0.090 4.090 23 C -0.101 4.101 24 C -0.115 4.115 25 H 0.258 0.742 26 H 0.365 0.635 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.416 0.584 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.222 -14.880 -9.316 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.365 4.365 8 H 0.076 0.924 9 N -0.406 5.406 10 C 0.041 3.959 11 C -0.137 4.137 12 C -0.182 4.182 13 C 0.021 3.979 14 N -0.356 5.356 15 C 0.302 3.698 16 O -0.467 6.467 17 C -0.121 4.121 18 H 0.139 0.861 19 C -0.118 4.118 20 C -0.181 4.181 21 C -0.177 4.177 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.153 4.153 25 H 0.067 0.933 26 H 0.197 0.803 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.253 0.747 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.469 -14.297 -9.132 30.602 hybrid contribution -0.525 1.091 -0.086 1.214 sum 24.943 -13.206 -9.218 29.691 Atomic orbital electron populations 1.69879 1.07085 1.26672 1.59865 1.25510 0.96137 1.01247 1.02795 0.85412 0.78644 0.79708 0.78053 1.20584 1.22151 1.17746 1.19077 0.82855 0.93490 1.41054 0.92399 1.42776 1.02452 1.04445 1.90891 1.20777 0.89797 0.87113 0.98234 1.22511 0.93577 0.99744 0.97865 1.23498 0.97005 1.00487 0.97229 1.22367 0.93965 0.91750 0.89839 1.45953 1.22547 1.25465 1.41599 1.21206 0.80443 0.86702 0.81409 1.90680 1.59857 1.30175 1.65985 1.21425 0.97081 0.99059 0.94568 0.86101 1.20432 0.97788 1.00530 0.93081 1.22085 0.96506 1.00467 0.99022 1.22260 0.94695 1.00670 1.00056 1.20509 0.97486 0.97914 0.96765 1.21399 0.95174 0.98187 0.99118 1.23234 0.95177 0.97274 0.99661 0.93333 0.80256 0.95599 0.95292 0.89313 0.89416 0.92750 0.88268 0.74679 0.88573 0.91788 0.86490 0.86536 0.89452 0.90000 0.93040 0.91777 0.89347 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.85 13.97 21.65 0.30 -63.55 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.95 46.42 27.73 68.60 1.90 48.32 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 7 C -0.23 -13.51 10.47 84.04 0.88 -12.63 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 N -0.76 -35.82 5.41 -343.44 -1.86 -37.67 16 10 C 0.17 6.07 6.10 86.38 0.53 6.59 16 11 C -0.12 -3.22 3.75 -10.27 -0.04 -3.26 16 12 C -0.14 -3.73 7.43 31.12 0.23 -3.50 16 13 C 0.13 2.72 4.24 45.52 0.19 2.92 16 14 N -0.70 -12.42 5.26 -440.02 -2.32 -14.74 16 15 C 0.51 10.99 7.14 87.66 0.63 11.62 16 16 O -0.59 -18.02 15.50 -3.03 -0.05 -18.07 16 17 C -0.10 -1.48 2.58 -11.40 -0.03 -1.51 16 18 H 0.12 1.27 8.13 -2.39 -0.02 1.25 16 19 C -0.08 -1.04 5.27 29.66 0.16 -0.89 16 20 C -0.16 -1.92 9.80 27.04 0.27 -1.66 16 21 C -0.16 -1.78 9.80 27.03 0.27 -1.52 16 22 C -0.09 -1.02 6.12 29.66 0.18 -0.83 16 23 C -0.10 -1.65 4.70 30.74 0.14 -1.51 16 24 C -0.11 -2.22 7.39 31.12 0.23 -1.99 16 25 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.36 16.57 5.53 -92.71 -0.51 16.06 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.03 1.06 7.85 -2.38 -0.02 1.04 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.09 2.26 7.90 -2.39 -0.02 2.24 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 2.49 7.47 -2.39 -0.02 2.47 16 33 H 0.42 4.77 8.40 -92.71 -0.78 3.99 16 34 H 0.10 0.88 7.89 -2.39 -0.02 0.86 16 35 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 36 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 41 H 0.06 1.18 7.89 -2.39 -0.02 1.16 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.11 1.69 8.08 -2.39 -0.02 1.67 16 Total: -1.00 -74.26 345.58 1.73 -72.53 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.36 Total: 24.81 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 4.10 Total: -11.63 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -3.87 Total: -115.96 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.32 kcal Total: -74.26 1.73 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.708 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds