Wall clock time and date at job start Tue Mar 31 2020 00:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.53785 * 113.61570 * 274.13670 * 11 10 9 13 13 C 1.53956 * 87.02052 * 220.04627 * 12 11 10 14 14 N 1.46499 * 113.74239 * 139.94047 * 13 12 11 15 15 C 1.34779 * 119.99584 * 107.40091 * 14 13 12 16 16 O 1.21282 * 120.00310 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99964 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.63833 * 59.99998 * 17 15 14 19 19 C 1.53037 * 109.64316 * 299.58455 * 17 15 14 20 20 C 1.50060 * 110.14555 * 190.87745 * 19 17 15 21 21 C 1.29447 * 124.08076 * 17.12988 * 20 19 17 22 22 C 1.50072 * 124.07026 * 359.55369 * 21 20 19 23 23 C 1.52944 * 110.30323 * 16.94770 * 22 21 20 24 24 C 1.53777 * 87.11087 * 25.36196 * 13 12 11 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 1.09001 * 112.85054 * 45.33091 * 11 10 9 30 30 H 1.09000 * 113.61195 * 334.56762 * 12 11 10 31 31 H 1.09001 * 113.61520 * 105.46896 * 12 11 10 32 32 H 1.09005 * 113.53676 * 270.80967 * 13 12 11 33 33 H 0.96995 * 120.00434 * 287.40153 * 14 13 12 34 34 H 1.09005 * 109.35377 * 311.08463 * 19 17 15 35 35 H 1.08996 * 109.35492 * 70.80588 * 19 17 15 36 36 H 1.08003 * 117.96278 * 197.10431 * 20 19 17 37 37 H 1.07995 * 117.96608 * 179.52805 * 21 20 19 38 38 H 1.09003 * 109.35532 * 137.31526 * 22 21 20 39 39 H 1.08997 * 109.35476 * 257.03325 * 22 21 20 40 40 H 1.09003 * 109.79748 * 191.11887 * 23 22 21 41 41 H 1.08998 * 109.43741 * 70.51211 * 23 22 21 42 42 H 1.09011 * 113.61618 * 220.09268 * 24 13 12 43 43 H 1.09000 * 113.69499 * 89.19666 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 0.5859 -5.2222 1.4029 13 6 0.6861 -6.6841 0.9305 14 7 1.2276 -7.5950 1.9421 15 6 0.4147 -8.4733 2.5622 16 8 -0.7648 -8.5098 2.2825 17 6 0.9718 -9.4107 3.6023 18 1 1.4063 -8.8348 4.4194 19 6 2.0460 -10.2995 2.9713 20 6 2.4196 -11.4064 3.9131 21 6 1.7028 -11.7677 4.9286 22 6 0.4026 -11.1235 5.3117 23 6 -0.1499 -10.3069 4.1424 24 6 1.7328 -6.2018 -0.0876 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.2525 -4.6824 -0.7169 30 1 1.2924 -4.9694 2.1935 31 1 -0.4322 -4.9032 1.6257 32 1 -0.2298 -7.0571 0.4719 33 1 2.1710 -7.5661 2.1656 34 1 1.6626 -10.7272 2.0449 35 1 2.9294 -9.6993 2.7538 36 1 3.3439 -11.9349 3.7321 37 1 2.0625 -12.5836 5.5379 38 1 -0.3162 -11.8958 5.5858 39 1 0.5641 -10.4619 6.1627 40 1 -0.9804 -9.6889 4.4836 41 1 -0.4898 -10.9820 3.3571 42 1 1.6392 -6.6725 -1.0664 43 1 2.7539 -6.2170 0.2934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755205902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:00 Heat of formation + Delta-G solvation = -9.940854 kcal Electronic energy + Delta-G solvation = -21059.649536 eV Core-core repulsion = 17912.007311 eV Total energy + Delta-G solvation = -3147.642226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47821 -38.91591 -37.52855 -34.55567 -33.35876 -31.56666 -31.11141 -30.64679 -26.80532 -25.49070 -24.51126 -23.51116 -22.77587 -21.21507 -20.43187 -19.31611 -18.24529 -17.37977 -17.04941 -16.32240 -15.80634 -15.13614 -14.94875 -14.52471 -14.39722 -14.01043 -13.66676 -13.49480 -13.26767 -13.09328 -12.95803 -12.59215 -12.52634 -12.26866 -11.77620 -11.60642 -11.28722 -11.17455 -11.05951 -10.85260 -10.72101 -10.63622 -10.34270 -10.09512 -9.90863 -9.71171 -9.56758 -9.35692 -8.96280 -8.82740 -6.88441 -5.73742 -3.02259 1.93135 2.56134 3.13427 3.44826 3.49524 3.51576 4.27843 4.33019 4.53074 4.59980 4.69242 4.83795 4.87357 4.91822 4.96902 5.06105 5.10599 5.14993 5.20939 5.30447 5.51393 5.58668 5.59234 5.60930 5.77135 5.85604 5.91185 5.93674 6.00222 6.07779 6.11982 6.26604 6.28752 6.33956 6.44591 6.57835 6.65032 6.80214 6.94378 7.47425 7.71490 8.18023 8.45337 9.56191 10.15617 10.50105 11.49212 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.002620 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.374385 B =10685.667753 C =10727.892809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.138 4.138 13 C 0.117 3.883 14 N -0.717 5.717 15 C 0.517 3.483 16 O -0.541 6.541 17 C -0.109 4.109 18 H 0.099 0.901 19 C -0.081 4.081 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.094 4.094 23 C -0.100 4.100 24 C -0.137 4.137 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.399 0.601 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -24.788 8.189 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.130 4.130 12 C -0.177 4.177 13 C 0.012 3.988 14 N -0.367 5.367 15 C 0.303 3.697 16 O -0.417 6.417 17 C -0.130 4.130 18 H 0.117 0.883 19 C -0.118 4.118 20 C -0.174 4.174 21 C -0.172 4.172 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.176 4.176 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.234 0.766 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.003 -24.697 7.990 26.264 hybrid contribution 0.749 1.001 0.130 1.257 sum 4.751 -23.696 8.120 25.495 Atomic orbital electron populations 1.69662 1.05104 1.25615 1.57842 1.24747 0.95529 0.97697 1.03153 0.86191 0.78613 0.83894 0.77502 1.21736 1.21778 1.20810 1.19232 0.90993 0.84267 1.42535 0.91267 1.42355 1.05912 0.99964 1.89378 1.20594 0.92875 0.85174 0.97551 1.22534 0.99354 0.93907 0.97248 1.23465 1.02422 0.94028 0.97756 1.22698 0.98306 0.88666 0.89082 1.46082 1.12148 1.37332 1.41126 1.20625 0.86591 0.80523 0.81987 1.90699 1.16272 1.70299 1.64470 1.21425 0.97879 0.96186 0.97552 0.88320 1.20411 0.97667 0.95481 0.98257 1.21981 0.99891 0.98690 0.96832 1.22104 0.96707 1.00127 0.98261 1.20500 0.95043 0.99129 0.98415 1.21405 0.96759 0.97763 0.97824 1.23325 0.98544 0.96801 0.98910 0.93526 0.78245 0.96377 0.96427 0.88907 0.89839 0.91159 0.87031 0.76643 0.90295 0.90433 0.87610 0.87883 0.90650 0.90716 0.90510 0.91174 0.91066 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.84 5.60 -59.91 -0.34 -19.18 16 10 C 0.17 3.31 6.08 -4.04 -0.02 3.29 16 11 C -0.11 -1.77 3.75 -89.81 -0.34 -2.10 16 12 C -0.14 -2.08 7.45 -25.82 -0.19 -2.27 16 13 C 0.12 1.49 4.24 -67.03 -0.28 1.20 16 14 N -0.72 -7.63 5.27 -52.93 -0.28 -7.91 16 15 C 0.52 6.17 7.13 -10.99 -0.08 6.09 16 16 O -0.54 -8.70 15.50 5.56 0.09 -8.61 16 17 C -0.11 -0.95 2.57 -91.55 -0.24 -1.19 16 18 H 0.10 0.77 8.13 -51.93 -0.42 0.34 16 19 C -0.08 -0.58 5.28 -28.17 -0.15 -0.72 16 20 C -0.16 -1.06 9.80 -35.90 -0.35 -1.41 16 21 C -0.15 -1.05 9.81 -35.90 -0.35 -1.40 16 22 C -0.09 -0.65 6.11 -28.21 -0.17 -0.83 16 23 C -0.10 -0.90 4.70 -26.56 -0.12 -1.02 16 24 C -0.14 -1.65 7.39 -25.92 -0.19 -1.84 16 25 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.11 1.58 7.46 -51.93 -0.39 1.19 16 33 H 0.40 3.19 8.43 -40.82 -0.34 2.85 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 36 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.78 7.91 -51.93 -0.41 0.36 16 41 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 42 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 43 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -33.08 348.84 -9.61 -42.69 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.30 Total: 7.83 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.74 Total: -9.71 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.11 Total: -55.08 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.08 -9.61 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.747 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds