Wall clock time and date at job start Tue Mar 31 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.53785 * 113.61570 * 274.13670 * 11 10 9 13 13 C 1.53956 * 87.02052 * 220.04627 * 12 11 10 14 14 N 1.46499 * 113.74239 * 139.94047 * 13 12 11 15 15 C 1.34779 * 119.99584 * 107.40091 * 14 13 12 16 16 O 1.21282 * 120.00310 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99964 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.63833 * 59.99998 * 17 15 14 19 19 C 1.53037 * 109.64316 * 299.58455 * 17 15 14 20 20 C 1.50060 * 110.14555 * 190.87745 * 19 17 15 21 21 C 1.29447 * 124.08076 * 17.12988 * 20 19 17 22 22 C 1.50072 * 124.07026 * 359.55369 * 21 20 19 23 23 C 1.52944 * 110.30323 * 16.94770 * 22 21 20 24 24 C 1.53777 * 87.11087 * 25.36196 * 13 12 11 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 1.09001 * 112.85054 * 45.33091 * 11 10 9 30 30 H 1.09000 * 113.61195 * 334.56762 * 12 11 10 31 31 H 1.09001 * 113.61520 * 105.46896 * 12 11 10 32 32 H 1.09005 * 113.53676 * 270.80967 * 13 12 11 33 33 H 0.96995 * 120.00434 * 287.40153 * 14 13 12 34 34 H 1.09005 * 109.35377 * 311.08463 * 19 17 15 35 35 H 1.08996 * 109.35492 * 70.80588 * 19 17 15 36 36 H 1.08003 * 117.96278 * 197.10431 * 20 19 17 37 37 H 1.07995 * 117.96608 * 179.52805 * 21 20 19 38 38 H 1.09003 * 109.35532 * 137.31526 * 22 21 20 39 39 H 1.08997 * 109.35476 * 257.03325 * 22 21 20 40 40 H 1.09003 * 109.79748 * 191.11887 * 23 22 21 41 41 H 1.08998 * 109.43741 * 70.51211 * 23 22 21 42 42 H 1.09011 * 113.61618 * 220.09268 * 24 13 12 43 43 H 1.09000 * 113.69499 * 89.19666 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 0.5859 -5.2222 1.4029 13 6 0.6861 -6.6841 0.9305 14 7 1.2276 -7.5950 1.9421 15 6 0.4147 -8.4733 2.5622 16 8 -0.7648 -8.5098 2.2825 17 6 0.9718 -9.4107 3.6023 18 1 1.4063 -8.8348 4.4194 19 6 2.0460 -10.2995 2.9713 20 6 2.4196 -11.4064 3.9131 21 6 1.7028 -11.7677 4.9286 22 6 0.4026 -11.1235 5.3117 23 6 -0.1499 -10.3069 4.1424 24 6 1.7328 -6.2018 -0.0876 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.2525 -4.6824 -0.7169 30 1 1.2924 -4.9694 2.1935 31 1 -0.4322 -4.9032 1.6257 32 1 -0.2298 -7.0571 0.4719 33 1 2.1710 -7.5661 2.1656 34 1 1.6626 -10.7272 2.0449 35 1 2.9294 -9.6993 2.7538 36 1 3.3439 -11.9349 3.7321 37 1 2.0625 -12.5836 5.5379 38 1 -0.3162 -11.8958 5.5858 39 1 0.5641 -10.4619 6.1627 40 1 -0.9804 -9.6889 4.4836 41 1 -0.4898 -10.9820 3.3571 42 1 1.6392 -6.6725 -1.0664 43 1 2.7539 -6.2170 0.2934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755205902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:59 Heat of formation + Delta-G solvation = -31.022609 kcal Electronic energy + Delta-G solvation = -21060.563710 eV Core-core repulsion = 17912.007311 eV Total energy + Delta-G solvation = -3148.556399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.43220 -39.94545 -38.37719 -36.33237 -34.63239 -32.92254 -32.05424 -31.58732 -28.46294 -26.63424 -25.65590 -24.68806 -23.86656 -22.48565 -21.41423 -20.53875 -19.06402 -18.83384 -18.18936 -17.41723 -16.73395 -16.46251 -16.22150 -15.87757 -15.34009 -15.18106 -14.93398 -14.65953 -14.57557 -14.26972 -13.92992 -13.38626 -13.36033 -13.19071 -13.12534 -12.99411 -12.88167 -12.73009 -12.17998 -12.11600 -11.96331 -11.84400 -11.71102 -11.38242 -11.33782 -11.25496 -10.89479 -10.63247 -9.98726 -9.85019 -8.98503 -7.94845 -5.23797 1.44235 1.46827 1.49182 1.57543 1.61708 2.22405 2.56396 3.38146 3.55691 3.59908 3.61100 3.73910 3.87043 3.89237 3.93930 4.21761 4.30655 4.32291 4.42148 4.49051 4.59548 4.62559 4.65460 4.75206 4.81115 4.89663 4.93482 4.96298 4.99620 5.06317 5.07132 5.14495 5.23830 5.28613 5.33925 5.43784 5.50613 5.66182 5.79667 6.08404 6.27600 6.59571 7.27782 7.33167 8.11411 8.33261 9.29046 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.002620 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.374385 B =10685.667753 C =10727.892809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.115 4.115 12 C -0.141 4.141 13 C 0.128 3.872 14 N -0.704 5.704 15 C 0.514 3.486 16 O -0.588 6.588 17 C -0.102 4.102 18 H 0.114 0.886 19 C -0.078 4.078 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.091 4.091 23 C -0.101 4.101 24 C -0.112 4.112 25 H 0.251 0.749 26 H 0.372 0.628 27 H 0.023 0.977 28 H 0.025 0.975 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.416 0.584 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -26.061 8.711 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.134 4.134 12 C -0.179 4.179 13 C 0.023 3.977 14 N -0.355 5.355 15 C 0.302 3.698 16 O -0.468 6.468 17 C -0.123 4.123 18 H 0.132 0.868 19 C -0.115 4.115 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.151 4.151 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.254 0.746 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.740 -26.009 8.518 28.185 hybrid contribution -0.090 1.350 -0.024 1.353 sum 6.650 -24.659 8.494 26.915 Atomic orbital electron populations 1.69832 1.06754 1.26063 1.59708 1.25625 0.96421 1.01328 1.03862 0.85106 0.77708 0.79276 0.77475 1.21333 1.22302 1.19196 1.19679 0.91574 0.85425 1.40938 0.90445 1.42625 1.05629 1.01418 1.89328 1.20782 0.93491 0.84192 0.97688 1.22446 0.98783 0.94656 0.97545 1.23466 1.01046 0.96015 0.97419 1.22363 0.98354 0.87529 0.89488 1.45933 1.12930 1.36330 1.40258 1.21238 0.85986 0.80583 0.82019 1.90684 1.18439 1.71660 1.66024 1.21432 0.98170 0.95824 0.96897 0.86774 1.20429 0.97620 0.95615 0.97880 1.22110 1.00522 0.98582 0.96599 1.22242 0.96367 1.00541 0.98740 1.20486 0.95530 0.99185 0.97578 1.21379 0.96587 0.97620 0.98302 1.23217 0.99022 0.93196 0.99621 0.94060 0.79683 0.95935 0.95700 0.90230 0.89637 0.93520 0.88568 0.74633 0.91082 0.88333 0.86060 0.86481 0.89945 0.89993 0.92317 0.92581 0.89380 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -38.75 5.60 -343.45 -1.92 -40.68 16 10 C 0.16 6.43 6.08 86.38 0.53 6.95 16 11 C -0.11 -3.58 3.75 -10.27 -0.04 -3.62 16 12 C -0.14 -4.23 7.45 31.18 0.23 -3.99 16 13 C 0.13 3.12 4.24 45.58 0.19 3.31 16 14 N -0.70 -13.70 5.27 -439.76 -2.32 -16.02 16 15 C 0.51 11.88 7.13 87.66 0.63 12.51 16 16 O -0.59 -19.32 15.50 -3.04 -0.05 -19.37 16 17 C -0.10 -1.63 2.57 -11.40 -0.03 -1.66 16 18 H 0.11 1.50 8.13 -2.39 -0.02 1.48 16 19 C -0.08 -0.92 5.28 29.66 0.16 -0.77 16 20 C -0.16 -1.74 9.80 27.03 0.27 -1.47 16 21 C -0.16 -1.81 9.81 27.03 0.27 -1.54 16 22 C -0.09 -1.14 6.11 29.63 0.18 -0.95 16 23 C -0.10 -1.78 4.70 30.71 0.14 -1.64 16 24 C -0.11 -2.41 7.39 31.12 0.23 -2.18 16 25 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.03 0.95 7.87 -2.39 -0.02 0.93 16 29 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.09 2.52 7.92 -2.39 -0.02 2.50 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 2.72 7.46 -2.38 -0.02 2.70 16 33 H 0.42 5.33 8.43 -92.71 -0.78 4.55 16 34 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 35 H 0.10 0.75 7.92 -2.39 -0.02 0.73 16 36 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.23 7.91 -2.39 -0.02 1.21 16 41 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 42 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.11 1.88 8.08 -2.39 -0.02 1.86 16 Total: -1.00 -72.40 348.84 1.58 -70.82 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.50 Total: 29.62 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.06 Total: -12.31 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -3.96 Total: -117.40 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -72.40 1.58 -70.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.801 kcal (2) G-P(sol) polarization free energy of solvation -72.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds