Wall clock time and date at job start Tue Mar 31 2020 00:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00332 * 2 1 4 4 H 1.48498 * 109.47449 * 240.00329 * 3 2 1 5 5 H 1.48502 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47071 * 120.00436 * 3 2 1 7 7 C 1.38815 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99614 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99872 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46766 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.85412 * 43.80511 * 11 10 9 13 13 C 1.53785 * 113.61100 * 175.00257 * 11 10 9 14 14 C 1.53781 * 87.08277 * 140.06519 * 13 11 10 15 15 H 1.09002 * 113.61228 * 220.01683 * 14 13 11 16 16 N 1.46500 * 113.61711 * 89.19510 * 14 13 11 17 17 C 1.34778 * 119.99919 * 156.52821 * 16 14 13 18 18 O 1.21277 * 119.99902 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99998 * 180.02562 * 17 16 14 20 20 H 1.08994 * 109.64190 * 300.00253 * 19 17 16 21 21 C 1.53030 * 109.63965 * 60.42438 * 19 17 16 22 22 C 1.50162 * 110.09111 * 168.90610 * 21 19 17 23 23 C 1.29443 * 124.15240 * 343.27822 * 22 21 19 24 24 C 1.50066 * 124.07055 * 0.24426 * 23 22 21 25 25 C 1.53021 * 110.15128 * 342.86814 * 24 23 22 26 26 C 1.53776 * 113.69177 * 272.53131 * 11 10 9 27 27 H 0.97000 * 119.99604 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99923 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.47068 * 60.00235 * 10 9 7 30 30 H 1.08997 * 109.46834 * 300.00099 * 10 9 7 31 31 H 1.08993 * 113.61827 * 25.50878 * 13 11 10 32 32 H 1.09006 * 113.60734 * 254.60906 * 13 11 10 33 33 H 0.96998 * 119.99853 * 336.53388 * 16 14 13 34 34 H 1.08996 * 109.35583 * 289.32454 * 21 19 17 35 35 H 1.08991 * 109.35881 * 48.90835 * 21 19 17 36 36 H 1.08010 * 117.88691 * 163.03152 * 22 21 19 37 37 H 1.08000 * 117.96459 * 180.22161 * 23 22 21 38 38 H 1.09005 * 109.35489 * 222.65804 * 24 23 22 39 39 H 1.08997 * 109.36049 * 103.08117 * 24 23 22 40 40 H 1.09002 * 109.64210 * 289.75527 * 25 24 23 41 41 H 1.09000 * 109.82009 * 169.22402 * 25 24 23 42 42 H 1.09003 * 113.61687 * 105.46026 * 26 11 10 43 43 H 1.09009 * 113.61565 * 334.56374 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.2380 -4.6702 -0.6967 13 6 1.7304 -6.2001 -0.1240 14 6 0.7030 -6.7006 0.9050 15 1 1.1202 -7.3907 1.6384 16 7 -0.5388 -7.1925 0.3030 17 6 -1.3120 -8.0690 0.9741 18 8 -0.9800 -8.4501 2.0765 19 6 -2.5890 -8.5754 0.3546 20 1 -3.2568 -7.7374 0.1548 21 6 -2.2725 -9.3042 -0.9532 22 6 -3.4868 -10.0416 -1.4397 23 6 -4.5167 -10.3113 -0.7034 24 6 -4.6441 -9.9199 0.7397 25 6 -3.2709 -9.5612 1.3118 26 6 0.6144 -5.2492 1.4053 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7146 0.8894 30 1 2.6847 -3.7146 -0.8905 31 1 2.7580 -6.2225 0.2385 32 1 1.6180 -6.6531 -1.1091 33 1 -0.8043 -6.8874 -0.5787 34 1 -1.9607 -8.5788 -1.7047 35 1 -1.4646 -10.0158 -0.7839 36 1 -3.5029 -10.3638 -2.4705 37 1 -5.3353 -10.8512 -1.1559 38 1 -5.0644 -10.7524 1.3040 39 1 -5.3066 -9.0584 0.8233 40 1 -2.6648 -10.4626 1.4023 41 1 -3.3882 -9.0986 2.2918 42 1 -0.3989 -4.9345 1.6551 43 1 1.3370 -5.0116 2.1862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755467667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:42 Heat of formation + Delta-G solvation = -7.801136 kcal Electronic energy + Delta-G solvation = -21224.196455 eV Core-core repulsion = 18076.647014 eV Total energy + Delta-G solvation = -3147.549441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52815 -38.95218 -37.48288 -34.53145 -33.22936 -31.52149 -31.06912 -30.60609 -26.84444 -25.48966 -24.43405 -23.48744 -22.86046 -21.39511 -20.52147 -19.05915 -18.20633 -17.45895 -17.02749 -16.19854 -15.74625 -15.01696 -14.83623 -14.49716 -14.18815 -14.04120 -13.91692 -13.48367 -13.34839 -13.22496 -12.82766 -12.56536 -12.48912 -12.29360 -12.10732 -11.60272 -11.26437 -11.06354 -11.01265 -10.80449 -10.64514 -10.46234 -10.34413 -10.09237 -9.83611 -9.74439 -9.58293 -9.31375 -8.97594 -8.82308 -6.88871 -5.74505 -3.02657 1.97765 2.57216 3.09087 3.45182 3.49302 3.50513 4.30740 4.36692 4.56902 4.59423 4.69130 4.83470 4.90712 4.94340 5.00356 5.12399 5.15319 5.16793 5.24900 5.35034 5.55196 5.59534 5.61873 5.64002 5.76840 5.88797 5.94436 5.95143 6.01689 6.05382 6.12837 6.26626 6.32746 6.34254 6.44391 6.62306 6.66059 6.80183 6.95594 7.47558 7.71087 8.18841 8.44867 9.55641 10.14985 10.49445 11.48477 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.002902 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.475560 B = 9646.129246 C =10008.217736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.115 3.885 15 H 0.097 0.903 16 N -0.708 5.708 17 C 0.520 3.480 18 O -0.541 6.541 19 C -0.109 4.109 20 H 0.100 0.900 21 C -0.081 4.081 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.094 4.094 25 C -0.099 4.099 26 C -0.138 4.138 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -22.224 -2.339 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.105 0.895 13 C -0.176 4.176 14 C 0.010 3.990 15 H 0.115 0.885 16 N -0.359 5.359 17 C 0.306 3.694 18 O -0.418 6.418 19 C -0.130 4.130 20 H 0.119 0.881 21 C -0.118 4.118 22 C -0.173 4.173 23 C -0.172 4.172 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.177 4.177 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.476 -22.376 -1.540 23.345 hybrid contribution -0.023 1.230 -0.588 1.363 sum -6.499 -21.146 -2.128 22.224 Atomic orbital electron populations 1.69653 1.05108 1.25699 1.57892 1.24741 0.95531 0.97683 1.03150 0.86263 0.78511 0.83557 0.77836 1.21297 1.21696 1.21290 1.19205 0.90996 0.84293 1.42543 0.91300 1.42345 1.05834 1.00000 1.89415 1.20634 0.93016 0.85225 0.97642 1.22754 0.99078 0.94221 0.97140 0.89464 1.23305 0.98875 0.96599 0.98844 1.21934 0.84619 0.95928 0.96562 0.88465 1.45731 1.23428 1.45549 1.21189 1.20595 0.85053 0.78201 0.85528 1.90689 1.72749 1.58267 1.20052 1.21424 0.95016 0.99888 0.96693 0.88149 1.20428 0.97155 0.99024 0.95233 1.21990 0.95370 1.00349 0.99624 1.22097 0.98414 1.00626 0.96077 1.20509 0.97552 1.01581 0.93432 1.21411 0.95233 0.98837 0.98202 1.23404 1.02422 0.94229 0.97657 0.93514 0.78341 0.96229 0.96435 0.88759 0.91302 0.76443 0.90336 0.90357 0.87603 0.87874 0.90689 0.90626 0.91182 0.90539 0.91380 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 10 C 0.16 3.25 6.10 -4.04 -0.02 3.22 16 11 C -0.11 -1.76 3.64 -89.81 -0.33 -2.08 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 13 C -0.14 -1.66 7.38 -25.92 -0.19 -1.85 16 14 C 0.11 1.47 4.30 -67.12 -0.29 1.18 16 15 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 16 N -0.71 -7.99 5.18 -53.02 -0.27 -8.27 16 17 C 0.52 6.41 7.13 -10.98 -0.08 6.33 16 18 O -0.54 -8.73 15.52 5.56 0.09 -8.64 16 19 C -0.11 -1.01 2.57 -91.55 -0.24 -1.25 16 20 H 0.10 0.87 8.13 -51.93 -0.42 0.44 16 21 C -0.08 -0.63 5.30 -28.13 -0.15 -0.77 16 22 C -0.16 -1.14 9.80 -35.85 -0.35 -1.50 16 23 C -0.15 -1.13 9.80 -35.90 -0.35 -1.48 16 24 C -0.09 -0.70 6.12 -28.18 -0.17 -0.87 16 25 C -0.10 -0.92 4.70 -26.52 -0.12 -1.05 16 26 C -0.14 -2.09 7.43 -25.92 -0.19 -2.29 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.38 10.30 7.67 -40.82 -0.31 9.98 16 29 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.70 8.41 -40.82 -0.34 3.36 16 34 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 35 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.11 0.66 8.06 -52.48 -0.42 0.23 16 37 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.39 7.90 -51.92 -0.41 0.98 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -32.83 348.69 -9.60 -42.43 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.30 Total: 8.42 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.73 Total: -9.89 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.11 Total: -55.18 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.83 -9.60 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755467667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.631 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds