Wall clock time and date at job start Tue Mar 31 2020 00:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00332 * 2 1 4 4 H 1.48498 * 109.47449 * 240.00329 * 3 2 1 5 5 H 1.48502 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47071 * 120.00436 * 3 2 1 7 7 C 1.38815 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99614 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99872 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46766 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.85412 * 43.80511 * 11 10 9 13 13 C 1.53785 * 113.61100 * 175.00257 * 11 10 9 14 14 C 1.53781 * 87.08277 * 140.06519 * 13 11 10 15 15 H 1.09002 * 113.61228 * 220.01683 * 14 13 11 16 16 N 1.46500 * 113.61711 * 89.19510 * 14 13 11 17 17 C 1.34778 * 119.99919 * 156.52821 * 16 14 13 18 18 O 1.21277 * 119.99902 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99998 * 180.02562 * 17 16 14 20 20 H 1.08994 * 109.64190 * 300.00253 * 19 17 16 21 21 C 1.53030 * 109.63965 * 60.42438 * 19 17 16 22 22 C 1.50162 * 110.09111 * 168.90610 * 21 19 17 23 23 C 1.29443 * 124.15240 * 343.27822 * 22 21 19 24 24 C 1.50066 * 124.07055 * 0.24426 * 23 22 21 25 25 C 1.53021 * 110.15128 * 342.86814 * 24 23 22 26 26 C 1.53776 * 113.69177 * 272.53131 * 11 10 9 27 27 H 0.97000 * 119.99604 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99923 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.47068 * 60.00235 * 10 9 7 30 30 H 1.08997 * 109.46834 * 300.00099 * 10 9 7 31 31 H 1.08993 * 113.61827 * 25.50878 * 13 11 10 32 32 H 1.09006 * 113.60734 * 254.60906 * 13 11 10 33 33 H 0.96998 * 119.99853 * 336.53388 * 16 14 13 34 34 H 1.08996 * 109.35583 * 289.32454 * 21 19 17 35 35 H 1.08991 * 109.35881 * 48.90835 * 21 19 17 36 36 H 1.08010 * 117.88691 * 163.03152 * 22 21 19 37 37 H 1.08000 * 117.96459 * 180.22161 * 23 22 21 38 38 H 1.09005 * 109.35489 * 222.65804 * 24 23 22 39 39 H 1.08997 * 109.36049 * 103.08117 * 24 23 22 40 40 H 1.09002 * 109.64210 * 289.75527 * 25 24 23 41 41 H 1.09000 * 109.82009 * 169.22402 * 25 24 23 42 42 H 1.09003 * 113.61687 * 105.46026 * 26 11 10 43 43 H 1.09009 * 113.61565 * 334.56374 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.2380 -4.6702 -0.6967 13 6 1.7304 -6.2001 -0.1240 14 6 0.7030 -6.7006 0.9050 15 1 1.1202 -7.3907 1.6384 16 7 -0.5388 -7.1925 0.3030 17 6 -1.3120 -8.0690 0.9741 18 8 -0.9800 -8.4501 2.0765 19 6 -2.5890 -8.5754 0.3546 20 1 -3.2568 -7.7374 0.1548 21 6 -2.2725 -9.3042 -0.9532 22 6 -3.4868 -10.0416 -1.4397 23 6 -4.5167 -10.3113 -0.7034 24 6 -4.6441 -9.9199 0.7397 25 6 -3.2709 -9.5612 1.3118 26 6 0.6144 -5.2492 1.4053 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7146 0.8894 30 1 2.6847 -3.7146 -0.8905 31 1 2.7580 -6.2225 0.2385 32 1 1.6180 -6.6531 -1.1091 33 1 -0.8043 -6.8874 -0.5787 34 1 -1.9607 -8.5788 -1.7047 35 1 -1.4646 -10.0158 -0.7839 36 1 -3.5029 -10.3638 -2.4705 37 1 -5.3353 -10.8512 -1.1559 38 1 -5.0644 -10.7524 1.3040 39 1 -5.3066 -9.0584 0.8233 40 1 -2.6648 -10.4626 1.4023 41 1 -3.3882 -9.0986 2.2918 42 1 -0.3989 -4.9345 1.6551 43 1 1.3370 -5.0116 2.1862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755467667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:41 Heat of formation + Delta-G solvation = -28.403850 kcal Electronic energy + Delta-G solvation = -21225.089856 eV Core-core repulsion = 18076.647014 eV Total energy + Delta-G solvation = -3148.442841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51968 -39.97146 -38.36279 -36.33786 -34.49583 -32.91891 -32.02972 -31.56255 -28.49633 -26.63114 -25.60442 -24.73813 -23.84107 -22.84091 -21.43429 -20.30188 -19.06109 -18.84240 -18.30299 -17.18353 -16.71678 -16.54794 -16.03989 -15.75331 -15.50179 -15.21494 -15.00362 -14.66299 -14.46970 -14.32460 -13.91909 -13.71026 -13.43621 -13.22607 -13.13176 -13.08971 -12.87143 -12.65714 -12.23244 -11.98841 -11.92403 -11.73895 -11.71848 -11.35242 -11.32009 -11.14128 -10.85860 -10.70882 -10.02458 -9.85718 -8.98085 -7.95082 -5.23453 1.43748 1.46720 1.49960 1.56077 1.59469 2.15443 2.56209 3.37674 3.55543 3.59485 3.60377 3.72919 3.85712 3.94150 3.95903 4.21740 4.30251 4.33501 4.41178 4.48258 4.57310 4.62202 4.74099 4.76616 4.84719 4.90100 4.91630 4.93503 4.98583 5.04751 5.06490 5.15659 5.26238 5.28939 5.32982 5.38264 5.49081 5.69081 5.78936 6.07885 6.27706 6.54950 7.23772 7.33547 8.11594 8.34014 9.28389 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.002902 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.475560 B = 9646.129246 C =10008.217736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.115 4.115 14 C 0.125 3.875 15 H 0.091 0.909 16 N -0.700 5.700 17 C 0.518 3.482 18 O -0.583 6.583 19 C -0.104 4.104 20 H 0.110 0.890 21 C -0.078 4.078 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.091 4.091 25 C -0.099 4.099 26 C -0.144 4.144 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.019 0.981 30 H 0.022 0.978 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.414 0.586 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 -23.111 -3.717 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.129 4.129 12 H 0.105 0.895 13 C -0.153 4.153 14 C 0.019 3.981 15 H 0.109 0.891 16 N -0.351 5.351 17 C 0.306 3.694 18 O -0.463 6.463 19 C -0.125 4.125 20 H 0.128 0.872 21 C -0.115 4.115 22 C -0.179 4.179 23 C -0.178 4.178 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.183 4.183 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.250 0.750 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.063 -23.289 -2.948 24.245 hybrid contribution -0.119 1.467 -0.118 1.477 sum -6.183 -21.822 -3.066 22.887 Atomic orbital electron populations 1.69813 1.06613 1.26125 1.59552 1.25585 0.96434 1.01161 1.03763 0.85204 0.77210 0.79099 0.78216 1.20211 1.22103 1.20518 1.19633 0.91510 0.85562 1.41222 0.90747 1.42583 1.05600 1.01289 1.89337 1.20825 0.93792 0.84569 0.97457 1.22681 0.98551 0.94353 0.97365 0.89537 1.23212 0.98850 0.93350 0.99915 1.21748 0.85446 0.94162 0.96752 0.89061 1.45678 1.22837 1.44981 1.21559 1.21158 0.85678 0.77641 0.84948 1.90671 1.73869 1.59790 1.21977 1.21439 0.93389 1.00288 0.97360 0.87164 1.20439 0.97414 0.99214 0.94471 1.22119 0.95051 1.00325 1.00404 1.22244 0.99051 1.00756 0.95770 1.20503 0.96239 1.02197 0.93878 1.21382 0.96405 0.98241 0.97677 1.23418 1.01137 0.96292 0.97433 0.94017 0.79548 0.96333 0.95967 0.87668 0.88783 0.74956 0.88680 0.90820 0.86125 0.86442 0.89757 0.90114 0.92260 0.92235 0.93212 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.31 5.60 -343.46 -1.92 -40.24 16 10 C 0.16 6.27 6.10 86.38 0.53 6.79 16 11 C -0.11 -3.31 3.64 -10.27 -0.04 -3.35 16 12 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 13 C -0.11 -2.48 7.38 31.12 0.23 -2.25 16 14 C 0.12 3.03 4.30 45.52 0.20 3.23 16 15 H 0.09 2.41 7.50 -2.39 -0.02 2.39 16 16 N -0.70 -14.84 5.18 -440.04 -2.28 -17.12 16 17 C 0.52 12.49 7.13 87.66 0.63 13.12 16 18 O -0.58 -19.07 15.52 -3.02 -0.05 -19.11 16 19 C -0.10 -1.82 2.57 -11.40 -0.03 -1.85 16 20 H 0.11 1.74 8.13 -2.39 -0.02 1.72 16 21 C -0.08 -1.05 5.30 29.69 0.16 -0.89 16 22 C -0.16 -2.00 9.80 27.07 0.27 -1.74 16 23 C -0.16 -2.01 9.80 27.04 0.27 -1.75 16 24 C -0.09 -1.24 6.12 29.66 0.18 -1.06 16 25 C -0.10 -1.83 4.70 30.73 0.14 -1.68 16 26 C -0.14 -4.33 7.43 31.12 0.23 -4.10 16 27 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 29 H 0.02 0.74 7.85 -2.39 -0.02 0.72 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 32 H 0.09 1.62 8.14 -2.38 -0.02 1.61 16 33 H 0.41 6.74 8.41 -92.71 -0.78 5.96 16 34 H 0.09 0.96 7.92 -2.39 -0.02 0.94 16 35 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 36 H 0.12 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 41 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.59 7.90 -2.38 -0.02 2.58 16 Total: -1.00 -70.75 348.69 1.62 -69.13 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.50 Total: 31.28 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.06 Total: -12.74 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.92 Total: -117.06 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -70.75 1.62 -69.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755467667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.723 kcal (2) G-P(sol) polarization free energy of solvation -70.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds