Wall clock time and date at job start Tue Mar 31 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48498 * 109.47054 * 240.00380 * 3 2 1 5 5 H 1.48496 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46864 * 120.00491 * 3 2 1 7 7 C 1.38810 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00600 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47619 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.84425 * 316.19657 * 11 10 9 13 13 C 1.54049 * 113.62020 * 87.50580 * 11 10 9 14 14 C 1.53772 * 86.98637 * 139.98199 * 13 11 10 15 15 H 1.09003 * 113.61387 * 219.98001 * 14 13 11 16 16 N 1.46498 * 113.61981 * 89.16055 * 14 13 11 17 17 C 1.34779 * 119.99842 * 105.85858 * 16 14 13 18 18 O 1.21282 * 120.00171 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99893 * 180.02562 * 17 16 14 20 20 H 1.09005 * 109.63689 * 60.42322 * 19 17 16 21 21 C 1.53030 * 109.64271 * 300.00568 * 19 17 16 22 22 C 1.50072 * 110.14486 * 190.66550 * 21 19 17 23 23 C 1.29439 * 124.07650 * 17.13170 * 22 21 19 24 24 C 1.50066 * 124.07706 * 359.54913 * 23 22 21 25 25 C 1.53029 * 110.14599 * 17.11080 * 24 23 22 26 26 C 1.53778 * 113.61542 * 184.99943 * 11 10 9 27 27 H 0.97001 * 119.99736 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99876 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46673 * 59.99807 * 10 9 7 30 30 H 1.09000 * 109.46699 * 300.00717 * 10 9 7 31 31 H 1.09001 * 113.61647 * 25.47080 * 13 11 10 32 32 H 1.09007 * 113.69200 * 254.49602 * 13 11 10 33 33 H 0.96995 * 119.99760 * 285.86828 * 16 14 13 34 34 H 1.09001 * 109.35979 * 70.45907 * 21 19 17 35 35 H 1.08992 * 109.24704 * 310.80342 * 21 19 17 36 36 H 1.08000 * 117.96198 * 197.15346 * 22 21 19 37 37 H 1.07999 * 117.96442 * 179.53105 * 23 22 21 38 38 H 1.09000 * 109.35786 * 137.31578 * 24 23 22 39 39 H 1.08994 * 109.36458 * 256.90413 * 24 23 22 40 40 H 1.09000 * 109.64166 * 70.24497 * 25 24 23 41 41 H 1.08995 * 109.64046 * 190.87354 * 25 24 23 42 42 H 1.08999 * 113.61158 * 105.46635 * 26 11 10 43 43 H 1.08997 * 113.69110 * 334.57753 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.2375 -4.6704 0.6938 13 6 0.6165 -5.2486 -1.4115 14 6 0.7050 -6.6996 -0.9101 15 1 1.1235 -7.3900 -1.6425 16 7 -0.5386 -7.1905 -0.3112 17 6 -1.3109 -8.0662 -0.9845 18 8 -0.9761 -8.4481 -2.0859 19 6 -2.5904 -8.5708 -0.3688 20 1 -3.2607 -7.7326 -0.1782 21 6 -2.2800 -9.2904 0.9457 22 6 -3.4972 -10.0181 1.4365 23 6 -4.5233 -10.2957 0.6978 24 6 -4.6433 -9.9200 -0.7501 25 6 -3.2671 -9.5671 -1.3188 26 6 1.7303 -6.2001 0.1216 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6846 -3.7145 0.8895 30 1 2.6847 -3.7145 -0.8905 31 1 1.3409 -5.0108 -2.1905 32 1 -0.3964 -4.9350 -1.6641 33 1 -0.8061 -6.8853 0.5697 34 1 -1.9699 -8.5599 1.6930 35 1 -1.4732 -10.0048 0.7824 36 1 -3.5185 -10.3294 2.4704 37 1 -5.3440 -10.8312 1.1517 38 1 -5.0604 -10.7586 -1.3076 39 1 -5.3054 -9.0596 -0.8466 40 1 -2.6604 -10.4693 -1.3964 41 1 -3.3828 -9.1139 -2.3034 42 1 1.6160 -6.6541 1.1059 43 1 2.7588 -6.2234 -0.2385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755467668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:44 Heat of formation + Delta-G solvation = -7.803338 kcal Electronic energy + Delta-G solvation = -21225.300324 eV Core-core repulsion = 18077.750788 eV Total energy + Delta-G solvation = -3147.549536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52554 -38.94483 -37.48538 -34.53130 -33.22677 -31.52091 -31.07074 -30.60408 -26.84414 -25.49025 -24.43365 -23.48329 -22.85974 -21.39221 -20.52144 -19.06104 -18.21346 -17.46060 -17.02712 -16.19679 -15.74339 -15.01467 -14.83537 -14.49857 -14.18817 -14.03706 -13.91825 -13.48365 -13.34667 -13.22762 -12.82832 -12.56188 -12.49136 -12.29370 -12.10465 -11.60189 -11.26707 -11.06397 -11.01290 -10.80477 -10.64327 -10.46393 -10.34626 -10.09178 -9.83235 -9.74428 -9.58247 -9.31370 -8.97680 -8.82270 -6.88862 -5.74472 -3.02630 1.97691 2.57256 3.09048 3.45216 3.49314 3.50540 4.30867 4.36587 4.57000 4.59455 4.68918 4.83751 4.90735 4.94316 5.00584 5.12373 5.15420 5.16430 5.24894 5.34775 5.55148 5.59566 5.61768 5.64093 5.76773 5.88807 5.94511 5.95203 6.01565 6.05189 6.12817 6.26389 6.32752 6.34272 6.44389 6.62254 6.66080 6.80087 6.95572 7.47601 7.71076 8.18873 8.44880 9.55673 10.15016 10.49486 11.48508 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.002905 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.954889 B = 9636.869742 C =10001.312448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.139 4.139 14 C 0.115 3.885 15 H 0.097 0.903 16 N -0.708 5.708 17 C 0.520 3.480 18 O -0.541 6.541 19 C -0.109 4.109 20 H 0.101 0.899 21 C -0.081 4.081 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.094 4.094 25 C -0.099 4.099 26 C -0.138 4.138 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -22.212 2.314 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.105 0.895 13 C -0.177 4.177 14 C 0.010 3.990 15 H 0.115 0.885 16 N -0.359 5.359 17 C 0.306 3.694 18 O -0.418 6.418 19 C -0.130 4.130 20 H 0.119 0.881 21 C -0.119 4.119 22 C -0.173 4.173 23 C -0.172 4.172 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.176 4.176 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.483 -22.365 1.516 23.335 hybrid contribution -0.027 1.231 0.590 1.365 sum -6.510 -21.134 2.105 22.214 Atomic orbital electron populations 1.69650 1.05109 1.25700 1.57893 1.24738 0.95528 0.97679 1.03150 0.86263 0.78514 0.83564 0.77837 1.21284 1.21696 1.21302 1.19203 0.90996 0.84293 1.42544 0.91302 1.42344 1.05835 0.99999 1.89414 1.20637 0.93019 0.85229 0.97641 1.22801 0.99076 0.94205 0.97097 0.89452 1.23450 1.02418 0.94234 0.97618 1.21935 0.84583 0.95938 0.96577 0.88475 1.45731 1.23310 1.45603 1.21255 1.20587 0.85087 0.78196 0.85490 1.90690 1.72746 1.58209 1.20116 1.21425 0.95022 0.99894 0.96691 0.88141 1.20420 0.97148 0.99140 0.95159 1.21974 0.95378 1.00366 0.99614 1.22099 0.98476 1.00605 0.96045 1.20515 0.97544 1.01640 0.93390 1.21415 0.95230 0.98729 0.98299 1.23297 0.98884 0.96610 0.98826 0.93512 0.78343 0.96434 0.96236 0.89186 0.91367 0.76442 0.90365 0.90331 0.87586 0.87884 0.90686 0.90624 0.91170 0.90547 0.91305 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 10 C 0.16 3.25 6.10 -4.04 -0.02 3.22 16 11 C -0.11 -1.75 3.65 -89.67 -0.33 -2.08 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 13 C -0.14 -2.09 7.45 -25.78 -0.19 -2.29 16 14 C 0.11 1.47 4.29 -67.12 -0.29 1.18 16 15 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 16 N -0.71 -7.99 5.17 -53.02 -0.27 -8.27 16 17 C 0.52 6.41 7.14 -10.98 -0.08 6.34 16 18 O -0.54 -8.73 15.53 5.56 0.09 -8.64 16 19 C -0.11 -1.01 2.58 -91.55 -0.24 -1.25 16 20 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 21 C -0.08 -0.63 5.27 -28.17 -0.15 -0.78 16 22 C -0.16 -1.14 9.80 -35.90 -0.35 -1.50 16 23 C -0.15 -1.13 9.80 -35.90 -0.35 -1.48 16 24 C -0.09 -0.70 6.12 -28.17 -0.17 -0.87 16 25 C -0.10 -0.92 4.71 -26.51 -0.12 -1.05 16 26 C -0.14 -1.66 7.38 -25.92 -0.19 -1.85 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.38 10.30 7.67 -40.82 -0.31 9.98 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 31 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.40 3.71 8.37 -40.82 -0.34 3.36 16 34 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 35 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -32.83 348.63 -9.60 -42.43 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.29 Total: 8.42 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.73 Total: -9.88 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.11 Total: -55.18 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.83 -9.60 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755467668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.623 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds