Wall clock time and date at job start Tue Mar 31 2020 00:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48498 * 109.47054 * 240.00380 * 3 2 1 5 5 H 1.48496 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46864 * 120.00491 * 3 2 1 7 7 C 1.38810 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00600 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47619 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.84425 * 316.19657 * 11 10 9 13 13 C 1.54049 * 113.62020 * 87.50580 * 11 10 9 14 14 C 1.53772 * 86.98637 * 139.98199 * 13 11 10 15 15 H 1.09003 * 113.61387 * 219.98001 * 14 13 11 16 16 N 1.46498 * 113.61981 * 89.16055 * 14 13 11 17 17 C 1.34779 * 119.99842 * 105.85858 * 16 14 13 18 18 O 1.21282 * 120.00171 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99893 * 180.02562 * 17 16 14 20 20 H 1.09005 * 109.63689 * 60.42322 * 19 17 16 21 21 C 1.53030 * 109.64271 * 300.00568 * 19 17 16 22 22 C 1.50072 * 110.14486 * 190.66550 * 21 19 17 23 23 C 1.29439 * 124.07650 * 17.13170 * 22 21 19 24 24 C 1.50066 * 124.07706 * 359.54913 * 23 22 21 25 25 C 1.53029 * 110.14599 * 17.11080 * 24 23 22 26 26 C 1.53778 * 113.61542 * 184.99943 * 11 10 9 27 27 H 0.97001 * 119.99736 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99876 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46673 * 59.99807 * 10 9 7 30 30 H 1.09000 * 109.46699 * 300.00717 * 10 9 7 31 31 H 1.09001 * 113.61647 * 25.47080 * 13 11 10 32 32 H 1.09007 * 113.69200 * 254.49602 * 13 11 10 33 33 H 0.96995 * 119.99760 * 285.86828 * 16 14 13 34 34 H 1.09001 * 109.35979 * 70.45907 * 21 19 17 35 35 H 1.08992 * 109.24704 * 310.80342 * 21 19 17 36 36 H 1.08000 * 117.96198 * 197.15346 * 22 21 19 37 37 H 1.07999 * 117.96442 * 179.53105 * 23 22 21 38 38 H 1.09000 * 109.35786 * 137.31578 * 24 23 22 39 39 H 1.08994 * 109.36458 * 256.90413 * 24 23 22 40 40 H 1.09000 * 109.64166 * 70.24497 * 25 24 23 41 41 H 1.08995 * 109.64046 * 190.87354 * 25 24 23 42 42 H 1.08999 * 113.61158 * 105.46635 * 26 11 10 43 43 H 1.08997 * 113.69110 * 334.57753 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.2375 -4.6704 0.6938 13 6 0.6165 -5.2486 -1.4115 14 6 0.7050 -6.6996 -0.9101 15 1 1.1235 -7.3900 -1.6425 16 7 -0.5386 -7.1905 -0.3112 17 6 -1.3109 -8.0662 -0.9845 18 8 -0.9761 -8.4481 -2.0859 19 6 -2.5904 -8.5708 -0.3688 20 1 -3.2607 -7.7326 -0.1782 21 6 -2.2800 -9.2904 0.9457 22 6 -3.4972 -10.0181 1.4365 23 6 -4.5233 -10.2957 0.6978 24 6 -4.6433 -9.9200 -0.7501 25 6 -3.2671 -9.5671 -1.3188 26 6 1.7303 -6.2001 0.1216 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6846 -3.7145 0.8895 30 1 2.6847 -3.7145 -0.8905 31 1 1.3409 -5.0108 -2.1905 32 1 -0.3964 -4.9350 -1.6641 33 1 -0.8061 -6.8853 0.5697 34 1 -1.9699 -8.5599 1.6930 35 1 -1.4732 -10.0048 0.7824 36 1 -3.5185 -10.3294 2.4704 37 1 -5.3440 -10.8312 1.1517 38 1 -5.0604 -10.7586 -1.3076 39 1 -5.3054 -9.0596 -0.8466 40 1 -2.6604 -10.4693 -1.3964 41 1 -3.3828 -9.1139 -2.3034 42 1 1.6160 -6.6541 1.1059 43 1 2.7588 -6.2234 -0.2385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755467668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:43 Heat of formation + Delta-G solvation = -28.396104 kcal Electronic energy + Delta-G solvation = -21226.193293 eV Core-core repulsion = 18077.750788 eV Total energy + Delta-G solvation = -3148.442506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51578 -39.96205 -38.36829 -36.33796 -34.49294 -32.91876 -32.02907 -31.56173 -28.49589 -26.63203 -25.60284 -24.73718 -23.83750 -22.83782 -21.43435 -20.30346 -19.06054 -18.84876 -18.30515 -17.18346 -16.71561 -16.54452 -16.03773 -15.75061 -15.50095 -15.21502 -15.00437 -14.66120 -14.46957 -14.32468 -13.92274 -13.70625 -13.43715 -13.22644 -13.12878 -13.08936 -12.87085 -12.65642 -12.23230 -11.99101 -11.92431 -11.74119 -11.71844 -11.35435 -11.31788 -11.13789 -10.85665 -10.70872 -10.02510 -9.85724 -8.98057 -7.95039 -5.23414 1.43657 1.46738 1.49977 1.56095 1.59486 2.15406 2.56217 3.37708 3.55696 3.59456 3.60291 3.72704 3.85888 3.94324 3.95684 4.21819 4.30248 4.33561 4.41410 4.48402 4.57212 4.62292 4.73803 4.76589 4.84740 4.90114 4.91601 4.93498 4.98650 5.04694 5.06535 5.15690 5.26127 5.28752 5.33023 5.38241 5.49076 5.69065 5.78961 6.07830 6.27728 6.54971 7.23774 7.33591 8.11637 8.34072 9.28427 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.002905 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.954889 B = 9636.869742 C =10001.312448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.111 4.111 12 H 0.087 0.913 13 C -0.144 4.144 14 C 0.125 3.875 15 H 0.091 0.909 16 N -0.700 5.700 17 C 0.518 3.482 18 O -0.583 6.583 19 C -0.104 4.104 20 H 0.110 0.890 21 C -0.078 4.078 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.091 4.091 25 C -0.099 4.099 26 C -0.115 4.115 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.414 0.586 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -23.098 3.686 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.129 4.129 12 H 0.105 0.895 13 C -0.183 4.183 14 C 0.019 3.981 15 H 0.109 0.891 16 N -0.351 5.351 17 C 0.306 3.694 18 O -0.463 6.463 19 C -0.125 4.125 20 H 0.128 0.872 21 C -0.116 4.116 22 C -0.179 4.179 23 C -0.178 4.178 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.153 4.153 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.250 0.750 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.074 -23.277 2.918 24.233 hybrid contribution -0.122 1.467 0.122 1.477 sum -6.196 -21.809 3.040 22.875 Atomic orbital electron populations 1.69810 1.06613 1.26126 1.59551 1.25582 0.96431 1.01156 1.03763 0.85205 0.77212 0.79107 0.78215 1.20510 1.22102 1.20221 1.19631 0.91508 0.85562 1.41223 0.90752 1.42582 1.05601 1.01288 1.89335 1.20828 0.93795 0.84574 0.97454 1.22729 0.98547 0.94334 0.97322 0.89521 1.23464 1.01138 0.96295 0.97395 1.21749 0.85410 0.94173 0.96767 0.89071 1.45678 1.22721 1.45035 1.21623 1.21149 0.85717 0.77634 0.84906 1.90672 1.73866 1.59734 1.22040 1.21438 0.93388 1.00286 0.97383 0.87176 1.20428 0.97417 0.99341 0.94373 1.22102 0.95058 1.00339 1.00396 1.22246 0.99114 1.00731 0.95742 1.20508 0.96227 1.02260 0.93835 1.21387 0.96406 0.98150 0.97756 1.23204 0.98866 0.93365 0.99891 0.94016 0.79549 0.95968 0.96342 0.89881 0.93193 0.74959 0.88725 0.90781 0.86112 0.86458 0.89747 0.90124 0.92217 0.92236 0.88787 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.31 5.60 -343.45 -1.92 -40.23 16 10 C 0.16 6.26 6.10 86.38 0.53 6.79 16 11 C -0.11 -3.30 3.65 -10.18 -0.04 -3.34 16 12 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 13 C -0.14 -4.34 7.45 31.21 0.23 -4.10 16 14 C 0.12 3.03 4.29 45.51 0.20 3.23 16 15 H 0.09 2.41 7.50 -2.39 -0.02 2.39 16 16 N -0.70 -14.85 5.17 -440.05 -2.28 -17.12 16 17 C 0.52 12.50 7.14 87.66 0.63 13.13 16 18 O -0.58 -19.07 15.53 -3.04 -0.05 -19.12 16 19 C -0.10 -1.83 2.58 -11.40 -0.03 -1.86 16 20 H 0.11 1.75 8.13 -2.38 -0.02 1.73 16 21 C -0.08 -1.05 5.27 29.66 0.16 -0.90 16 22 C -0.16 -2.00 9.80 27.04 0.27 -1.74 16 23 C -0.16 -2.01 9.80 27.04 0.27 -1.75 16 24 C -0.09 -1.24 6.12 29.66 0.18 -1.06 16 25 C -0.10 -1.82 4.71 30.74 0.14 -1.68 16 26 C -0.11 -2.48 7.38 31.12 0.23 -2.25 16 27 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.02 0.74 7.85 -2.39 -0.02 0.72 16 31 H 0.08 2.59 7.90 -2.39 -0.02 2.58 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.41 6.74 8.37 -92.71 -0.78 5.97 16 34 H 0.09 0.96 7.89 -2.39 -0.02 0.94 16 35 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 36 H 0.12 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 41 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -70.73 348.63 1.63 -69.10 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.49 Total: 31.28 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.06 Total: -12.73 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.92 Total: -117.05 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -70.73 1.63 -69.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755467668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.704 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds