Wall clock time and date at job start Mon Mar 30 2020 23:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47099 * 240.00231 * 3 2 1 5 5 H 1.48497 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47126 * 120.00128 * 3 2 1 7 7 C 1.38814 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99434 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99596 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46679 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11499 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45847 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 H 1.09003 * 110.03070 * 240.71854 * 15 14 13 17 17 N 1.46493 * 110.03852 * 119.28318 * 15 14 13 18 18 C 1.34782 * 119.99882 * 86.44742 * 17 15 14 19 19 O 1.21610 * 120.00096 * 0.02562 * 18 17 15 20 20 C 1.47102 * 119.99707 * 180.02562 * 18 17 15 21 21 C 1.32612 * 124.61729 * 180.02562 * 20 18 17 22 22 C 1.51116 * 110.75976 * 180.02562 * 21 20 18 23 23 C 1.54576 * 104.83718 * 16.60255 * 22 21 20 24 24 C 1.51116 * 124.62383 * 359.73290 * 20 18 17 25 25 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 26 26 H 0.96996 * 119.99647 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99924 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47462 * 60.00382 * 10 9 7 29 29 H 1.08995 * 109.47696 * 299.99705 * 10 9 7 30 30 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 31 31 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 32 32 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 33 33 H 1.08996 * 110.03108 * 216.98559 * 14 13 11 34 34 H 0.96996 * 120.00435 * 266.45708 * 17 15 14 35 35 H 1.08002 * 124.62481 * 359.97438 * 21 20 18 36 36 H 1.08997 * 110.36611 * 135.43836 * 22 21 20 37 37 H 1.08992 * 110.36988 * 257.75872 * 22 21 20 38 38 H 1.09000 * 110.99009 * 93.07337 * 23 22 21 39 39 H 1.09010 * 110.98184 * 216.83610 * 23 22 21 40 40 H 1.08998 * 110.36244 * 282.23686 * 24 20 18 41 41 H 1.08996 * 110.36136 * 44.55546 * 24 20 18 42 42 H 1.09005 * 110.48526 * 142.29451 * 25 15 14 43 43 H 1.09006 * 110.48581 * 264.93644 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.3887 -4.7519 0.8550 13 6 0.2679 -4.8618 -1.3261 14 6 -0.1944 -6.3286 -1.4473 15 6 0.7836 -7.1686 -0.6074 16 1 1.2931 -7.8938 -1.2420 17 7 0.0608 -7.8586 0.4637 18 6 -0.5099 -9.0568 0.2284 19 8 -0.4243 -9.5652 -0.8729 20 6 -1.2362 -9.7494 1.3040 21 6 -1.8302 -10.9279 1.1743 22 6 -2.4815 -11.3452 2.4725 23 6 -2.5610 -10.0485 3.3101 24 6 -1.4017 -9.2178 2.7088 25 6 1.8066 -6.1831 -0.0056 26 1 -0.4849 0.8400 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 2.6841 -3.7142 0.8922 29 1 2.6854 -3.7150 -0.8877 30 1 0.9106 -4.5938 -2.1647 31 1 -0.5919 -4.1936 -1.2769 32 1 -1.2070 -6.4343 -1.0579 33 1 -0.1605 -6.6458 -2.4895 34 1 -0.0073 -7.4532 1.3423 35 1 -1.8470 -11.5098 0.2646 36 1 -3.4809 -11.7382 2.2863 37 1 -1.8693 -12.0891 2.9821 38 1 -3.5195 -9.5496 3.1674 39 1 -2.3838 -10.2543 4.3659 40 1 -0.4864 -9.3678 3.2814 41 1 -1.6668 -8.1609 2.6856 42 1 2.0696 -6.4792 1.0099 43 1 2.6976 -6.1289 -0.6312 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755726877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:01 Heat of formation + Delta-G solvation = -30.751513 kcal Electronic energy + Delta-G solvation = -21262.906173 eV Core-core repulsion = 18114.361529 eV Total energy + Delta-G solvation = -3148.544644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28191 -38.58256 -37.46103 -34.77711 -33.28715 -31.13834 -29.74404 -28.79550 -28.75151 -27.42085 -24.44091 -22.61785 -22.19728 -21.20894 -20.00208 -19.62325 -18.89566 -17.36780 -17.04716 -16.33856 -15.90014 -15.18873 -14.84017 -14.71308 -14.19622 -14.03818 -13.38977 -13.16035 -13.06514 -12.93896 -12.78292 -12.37051 -12.13433 -11.97856 -11.78378 -11.57026 -11.49579 -11.16613 -11.04039 -10.83052 -10.72430 -10.52135 -10.29000 -10.21957 -9.95034 -9.94354 -9.63825 -9.28597 -8.99757 -8.84030 -6.88841 -5.74369 -3.02456 1.17536 3.15610 3.20178 3.45238 3.49447 3.50585 4.18368 4.24535 4.59162 4.63921 4.68420 4.80323 4.81177 4.96043 5.09442 5.29560 5.32952 5.45113 5.45565 5.53974 5.56229 5.61309 5.64815 5.71732 5.75670 5.82307 5.89919 5.92973 6.03316 6.15317 6.15804 6.26455 6.27721 6.35247 6.53652 6.63803 6.65926 6.82650 6.96267 7.48656 7.71309 8.17662 8.45050 9.55941 10.15143 10.49815 11.48619 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030236 B = 0.002960 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.825990 B = 9456.388969 C = 9916.027394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.097 4.097 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.141 3.859 16 H 0.087 0.913 17 N -0.715 5.715 18 C 0.564 3.436 19 O -0.546 6.546 20 C -0.193 4.193 21 C -0.077 4.077 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.093 4.093 25 C -0.123 4.123 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -22.446 5.595 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.116 4.116 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.036 3.964 16 H 0.105 0.895 17 N -0.365 5.365 18 C 0.352 3.648 19 O -0.425 6.425 20 C -0.196 4.196 21 C -0.097 4.097 22 C -0.144 4.144 23 C -0.161 4.161 24 C -0.130 4.130 25 C -0.162 4.162 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.434 -22.654 4.803 23.411 hybrid contribution 0.120 1.196 0.367 1.257 sum -3.315 -21.458 5.169 22.319 Atomic orbital electron populations 1.69651 1.05096 1.25700 1.57899 1.24735 0.95524 0.97660 1.03167 0.86266 0.78508 0.83586 0.77827 1.21302 1.21712 1.21316 1.19199 0.90990 0.84275 1.42525 0.91313 1.42338 1.05875 0.99941 1.89425 1.20634 0.93072 0.85321 0.97651 1.22380 0.97413 0.93822 0.97975 0.90798 1.22341 1.00295 0.94624 0.97730 1.22600 0.98966 0.95669 0.99881 1.21661 0.92378 0.93857 0.88468 0.89477 1.46111 1.55085 1.20083 1.15246 1.17996 0.78546 0.80864 0.87416 1.90781 1.60486 1.66735 1.24521 1.21896 1.03591 0.98278 0.95803 1.24041 0.92759 0.94507 0.98387 1.21484 1.01026 0.98532 0.93386 1.22465 0.98771 0.95371 0.99469 1.21304 0.99267 1.00451 0.91993 1.22737 0.97849 0.94489 1.01116 0.93513 0.78266 0.96554 0.96276 0.91308 0.91167 0.91701 0.91524 0.76449 0.84535 0.90253 0.89701 0.90681 0.90500 0.90148 0.90594 0.91178 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.54 5.45 -59.90 -0.33 -18.87 16 10 C 0.16 3.19 5.71 -4.04 -0.02 3.17 16 11 C -0.10 -1.51 2.98 -88.42 -0.26 -1.78 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.76 5.96 -25.07 -0.15 -1.91 16 14 C -0.13 -1.82 6.59 -25.62 -0.17 -1.99 16 15 C 0.14 1.78 3.22 -66.82 -0.22 1.56 16 16 H 0.09 1.18 7.61 -51.93 -0.40 0.78 16 17 N -0.71 -8.23 4.94 -53.91 -0.27 -8.50 16 18 C 0.56 7.32 7.78 -12.66 -0.10 7.22 16 19 O -0.55 -9.04 16.44 5.27 0.09 -8.96 16 20 C -0.19 -1.95 6.09 -102.73 -0.63 -2.57 16 21 C -0.08 -0.69 10.43 -36.01 -0.38 -1.07 16 22 C -0.11 -0.67 6.80 -26.85 -0.18 -0.85 16 23 C -0.12 -0.75 7.17 -24.97 -0.18 -0.93 16 24 C -0.09 -0.69 6.04 -26.75 -0.16 -0.86 16 25 C -0.12 -1.53 5.90 -24.87 -0.15 -1.68 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.38 10.19 7.53 -40.82 -0.31 9.88 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.92 7.92 -51.93 -0.41 0.50 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 3.83 7.56 -40.82 -0.31 3.52 16 35 H 0.14 1.25 8.03 -52.49 -0.42 0.83 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.55 7.82 -51.93 -0.41 0.14 16 42 H 0.07 0.78 7.98 -51.93 -0.41 0.36 16 43 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -32.77 348.94 -9.65 -42.42 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.27 Total: 7.90 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.84 Total: -9.09 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.13 Total: -55.05 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.77 -9.65 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.673 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds