Wall clock time and date at job start Mon Mar 30 2020 23:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47099 * 240.00231 * 3 2 1 5 5 H 1.48497 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47126 * 120.00128 * 3 2 1 7 7 C 1.38814 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99434 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99596 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46679 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11499 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45847 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 H 1.09003 * 110.03070 * 240.71854 * 15 14 13 17 17 N 1.46493 * 110.03852 * 119.28318 * 15 14 13 18 18 C 1.34782 * 119.99882 * 86.44742 * 17 15 14 19 19 O 1.21610 * 120.00096 * 0.02562 * 18 17 15 20 20 C 1.47102 * 119.99707 * 180.02562 * 18 17 15 21 21 C 1.32612 * 124.61729 * 180.02562 * 20 18 17 22 22 C 1.51116 * 110.75976 * 180.02562 * 21 20 18 23 23 C 1.54576 * 104.83718 * 16.60255 * 22 21 20 24 24 C 1.51116 * 124.62383 * 359.73290 * 20 18 17 25 25 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 26 26 H 0.96996 * 119.99647 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99924 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47462 * 60.00382 * 10 9 7 29 29 H 1.08995 * 109.47696 * 299.99705 * 10 9 7 30 30 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 31 31 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 32 32 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 33 33 H 1.08996 * 110.03108 * 216.98559 * 14 13 11 34 34 H 0.96996 * 120.00435 * 266.45708 * 17 15 14 35 35 H 1.08002 * 124.62481 * 359.97438 * 21 20 18 36 36 H 1.08997 * 110.36611 * 135.43836 * 22 21 20 37 37 H 1.08992 * 110.36988 * 257.75872 * 22 21 20 38 38 H 1.09000 * 110.99009 * 93.07337 * 23 22 21 39 39 H 1.09010 * 110.98184 * 216.83610 * 23 22 21 40 40 H 1.08998 * 110.36244 * 282.23686 * 24 20 18 41 41 H 1.08996 * 110.36136 * 44.55546 * 24 20 18 42 42 H 1.09005 * 110.48526 * 142.29451 * 25 15 14 43 43 H 1.09006 * 110.48581 * 264.93644 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.3887 -4.7519 0.8550 13 6 0.2679 -4.8618 -1.3261 14 6 -0.1944 -6.3286 -1.4473 15 6 0.7836 -7.1686 -0.6074 16 1 1.2931 -7.8938 -1.2420 17 7 0.0608 -7.8586 0.4637 18 6 -0.5099 -9.0568 0.2284 19 8 -0.4243 -9.5652 -0.8729 20 6 -1.2362 -9.7494 1.3040 21 6 -1.8302 -10.9279 1.1743 22 6 -2.4815 -11.3452 2.4725 23 6 -2.5610 -10.0485 3.3101 24 6 -1.4017 -9.2178 2.7088 25 6 1.8066 -6.1831 -0.0056 26 1 -0.4849 0.8400 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 2.6841 -3.7142 0.8922 29 1 2.6854 -3.7150 -0.8877 30 1 0.9106 -4.5938 -2.1647 31 1 -0.5919 -4.1936 -1.2769 32 1 -1.2070 -6.4343 -1.0579 33 1 -0.1605 -6.6458 -2.4895 34 1 -0.0073 -7.4532 1.3423 35 1 -1.8470 -11.5098 0.2646 36 1 -3.4809 -11.7382 2.2863 37 1 -1.8693 -12.0891 2.9821 38 1 -3.5195 -9.5496 3.1674 39 1 -2.3838 -10.2543 4.3659 40 1 -0.4864 -9.3678 3.2814 41 1 -1.6668 -8.1609 2.6856 42 1 2.0696 -6.4792 1.0099 43 1 2.6976 -6.1289 -0.6312 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755726877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:01 Heat of formation + Delta-G solvation = -51.159879 kcal Electronic energy + Delta-G solvation = -21263.791146 eV Core-core repulsion = 18114.361529 eV Total energy + Delta-G solvation = -3149.429617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24863 -39.55120 -38.41409 -36.45415 -34.69958 -32.95259 -30.55880 -30.12379 -29.48772 -28.53312 -26.20843 -23.97599 -23.51782 -21.80323 -21.06352 -20.98801 -19.75439 -19.09758 -18.13032 -17.38914 -16.71383 -16.54300 -16.27066 -15.80148 -15.64881 -15.30169 -14.99598 -14.57918 -14.43972 -13.81721 -13.58433 -13.56504 -13.11213 -13.02989 -12.83290 -12.74883 -12.58195 -12.31235 -12.19821 -12.06353 -12.05005 -11.99707 -11.87227 -11.63244 -11.51601 -11.47373 -10.96698 -10.89738 -10.18204 -9.81304 -8.97006 -7.93824 -5.21984 0.38685 1.47600 1.50684 1.56780 2.22577 2.28086 2.57158 3.39440 3.50276 3.56505 3.60508 3.67551 3.88498 4.10546 4.18052 4.22417 4.32343 4.42068 4.51412 4.52109 4.59302 4.72274 4.76591 4.79328 4.83038 4.87334 4.92318 4.98374 5.05005 5.06694 5.16003 5.18854 5.22857 5.35448 5.36360 5.39610 5.48787 5.55239 5.55961 5.61123 6.28826 6.56512 7.21840 7.35047 8.12911 8.35660 9.29689 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030236 B = 0.002960 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.825990 B = 9456.388969 C = 9916.027394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.089 4.089 12 H 0.073 0.927 13 C -0.108 4.108 14 C -0.124 4.124 15 C 0.147 3.853 16 H 0.082 0.918 17 N -0.705 5.705 18 C 0.559 3.441 19 O -0.590 6.590 20 C -0.215 4.215 21 C -0.072 4.072 22 C -0.104 4.104 23 C -0.121 4.121 24 C -0.090 4.090 25 C -0.109 4.109 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -23.525 7.068 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.033 3.967 11 C -0.108 4.108 12 H 0.092 0.908 13 C -0.146 4.146 14 C -0.162 4.162 15 C 0.042 3.958 16 H 0.101 0.899 17 N -0.356 5.356 18 C 0.349 3.651 19 O -0.473 6.473 20 C -0.218 4.218 21 C -0.091 4.091 22 C -0.140 4.140 23 C -0.158 4.158 24 C -0.127 4.127 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.741 -23.750 6.305 24.725 hybrid contribution -0.080 1.452 -0.128 1.460 sum -2.820 -22.298 6.178 23.310 Atomic orbital electron populations 1.69812 1.06604 1.26095 1.59605 1.25568 0.96405 1.01109 1.03828 0.85211 0.77196 0.79168 0.78197 1.20510 1.22188 1.20274 1.19624 0.91508 0.85511 1.41114 0.90724 1.42562 1.05660 1.01180 1.89329 1.20807 0.93745 0.84600 0.97593 1.22252 0.96777 0.93993 0.97742 0.90830 1.22250 0.99328 0.95444 0.97614 1.22502 0.99009 0.94442 1.00296 1.21505 0.92091 0.93574 0.88660 0.89939 1.46025 1.54438 1.19697 1.15453 1.18498 0.78166 0.80916 0.87534 1.90752 1.62276 1.67828 1.26428 1.21944 1.04505 0.98956 0.96431 1.24339 0.91585 0.93854 0.99363 1.21545 1.01660 0.99013 0.91792 1.22499 0.98131 0.94830 1.00353 1.21339 1.00386 1.00602 0.90400 1.22644 0.97465 0.91932 1.02643 0.94046 0.79426 0.95968 0.96237 0.92197 0.93363 0.92130 0.91496 0.75110 0.85443 0.88943 0.88104 0.90741 0.88695 0.89134 0.90600 0.89008 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.90 5.45 -343.44 -1.87 -39.77 16 10 C 0.16 6.19 5.71 86.38 0.49 6.68 16 11 C -0.09 -2.69 2.98 -9.37 -0.03 -2.72 16 12 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.11 -3.42 5.96 31.67 0.19 -3.24 16 14 C -0.12 -3.38 6.59 31.32 0.21 -3.18 16 15 C 0.15 3.55 3.22 45.72 0.15 3.69 16 16 H 0.08 2.15 7.61 -2.39 -0.02 2.14 16 17 N -0.71 -15.43 4.94 -442.71 -2.19 -17.62 16 18 C 0.56 14.24 7.78 86.57 0.67 14.91 16 19 O -0.59 -19.74 16.44 -4.06 -0.07 -19.81 16 20 C -0.22 -4.11 6.09 -18.56 -0.11 -4.23 16 21 C -0.07 -1.20 10.43 24.66 0.26 -0.94 16 22 C -0.10 -1.02 6.80 30.52 0.21 -0.81 16 23 C -0.12 -1.15 7.17 31.74 0.23 -0.92 16 24 C -0.09 -1.16 6.04 30.59 0.18 -0.97 16 25 C -0.11 -2.48 5.90 31.80 0.19 -2.29 16 26 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.37 20.24 7.53 -92.71 -0.70 19.54 16 28 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.02 0.77 8.10 -2.39 -0.02 0.75 16 30 H 0.06 1.98 8.01 -2.39 -0.02 1.96 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.71 7.92 -2.39 -0.02 1.69 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 7.15 7.56 -92.71 -0.70 6.45 16 35 H 0.13 2.31 8.03 -2.91 -0.02 2.29 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.96 7.82 -2.39 -0.02 0.94 16 42 H 0.09 1.75 7.98 -2.38 -0.02 1.73 16 43 H 0.09 1.97 8.06 -2.38 -0.02 1.95 16 Total: -1.00 -70.65 348.94 1.72 -68.93 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.40 Total: 30.40 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 3.94 Total: -10.97 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.77 Total: -116.91 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.07 Total: -19.81 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -70.65 1.72 -68.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.766 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds