Wall clock time and date at job start Mon Mar 30 2020 23:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.43338 * 54.29803 * 11 10 9 13 13 C 1.54885 * 110.48653 * 291.75792 * 11 10 9 14 14 C 1.54889 * 102.74980 * 203.37789 * 13 11 10 15 15 C 1.54273 * 104.19421 * 37.93859 * 14 13 11 16 16 H 1.09002 * 110.02932 * 95.72854 * 15 14 13 17 17 N 1.46499 * 110.03092 * 217.10609 * 15 14 13 18 18 C 1.34783 * 120.00118 * 273.54523 * 17 15 14 19 19 O 1.21612 * 119.99846 * 0.02562 * 18 17 15 20 20 C 1.47093 * 119.99881 * 180.02562 * 18 17 15 21 21 C 1.32617 * 124.62100 * 180.02562 * 20 18 17 22 22 C 1.51107 * 110.76036 * 180.02562 * 21 20 18 23 23 C 1.54573 * 104.84371 * 16.59687 * 22 21 20 24 24 C 1.51113 * 124.62375 * 359.73156 * 20 18 17 25 25 C 1.54083 * 106.62339 * 336.28168 * 15 14 13 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 1.09003 * 110.75649 * 321.68843 * 13 11 10 31 31 H 1.09003 * 110.75759 * 85.06339 * 13 11 10 32 32 H 1.08995 * 110.48930 * 156.61827 * 14 13 11 33 33 H 1.08999 * 110.48547 * 279.13668 * 14 13 11 34 34 H 0.97000 * 120.00041 * 93.55250 * 17 15 14 35 35 H 1.07998 * 124.61695 * 0.02562 * 21 20 18 36 36 H 1.09000 * 110.36561 * 135.43979 * 22 21 20 37 37 H 1.09006 * 110.36528 * 257.64572 * 22 21 20 38 38 H 1.09009 * 110.98430 * 93.07058 * 23 22 21 39 39 H 1.08995 * 110.99043 * 216.83745 * 23 22 21 40 40 H 1.09002 * 110.36421 * 282.23721 * 24 20 18 41 41 H 1.08996 * 110.36490 * 44.55106 * 24 20 18 42 42 H 1.08993 * 110.16120 * 240.87793 * 25 15 14 43 43 H 1.09003 * 110.00522 * 119.37673 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3637 -4.7214 -0.8320 13 6 0.3022 -4.8825 1.3450 14 6 -0.1501 -6.3624 1.4133 15 6 1.0380 -7.1487 0.8216 16 1 1.6837 -7.5085 1.6227 17 7 0.5470 -8.2779 0.0279 18 6 0.2773 -9.4553 0.6260 19 8 0.4411 -9.5801 1.8245 20 6 -0.2153 -10.5892 -0.1711 21 6 -0.5092 -11.7850 0.3213 22 6 -0.9860 -12.7122 -0.7725 23 6 -0.5410 -12.0341 -2.0883 24 6 -0.4613 -10.5485 -1.6615 25 6 1.8096 -6.1677 -0.0820 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.9661 -4.6428 2.1756 31 1 -0.5598 -4.2154 1.3330 32 1 -0.3275 -6.6597 2.4468 33 1 -1.0475 -6.5151 0.8139 34 1 0.4160 -8.1783 -0.9280 35 1 -0.4199 -12.0588 1.3622 36 1 -0.5161 -13.6905 -0.6721 37 1 -2.0714 -12.8086 -0.7417 38 1 0.4325 -12.4054 -2.4090 39 1 -1.2867 -12.1734 -2.8709 40 1 -1.3997 -10.0377 -1.8772 41 1 0.3664 -10.0534 -2.1692 42 1 1.8169 -6.5302 -1.1099 43 1 2.8309 -6.0513 0.2806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755726878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:03 Heat of formation + Delta-G solvation = -30.621550 kcal Electronic energy + Delta-G solvation = -21163.727579 eV Core-core repulsion = 18015.188571 eV Total energy + Delta-G solvation = -3148.539008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33085 -38.65508 -37.55948 -35.01301 -33.54501 -31.13281 -29.79906 -28.87333 -28.72835 -27.31921 -24.16037 -22.60730 -22.40200 -21.26805 -20.30240 -19.73842 -18.91454 -17.44214 -17.18746 -16.47080 -15.96496 -15.26913 -15.04480 -14.78321 -14.08978 -13.81799 -13.64001 -13.30027 -13.22622 -13.09370 -13.03222 -12.44191 -12.19589 -12.04268 -11.91641 -11.63568 -11.56025 -11.28375 -10.93903 -10.74404 -10.69288 -10.49892 -10.31559 -10.22972 -10.01575 -9.97600 -9.34706 -9.13964 -9.04717 -8.84221 -6.96152 -6.07909 -3.06684 1.11404 3.08940 3.13430 3.53126 3.58293 3.72135 4.11038 4.17449 4.56298 4.60586 4.64782 4.74080 4.77793 4.89708 5.00462 5.22960 5.26539 5.35394 5.38645 5.47836 5.51890 5.55804 5.58480 5.59868 5.66626 5.74461 5.82723 5.86074 5.96271 6.04872 6.08390 6.14553 6.20028 6.25233 6.47019 6.49782 6.56578 6.74179 6.87625 7.41069 7.84197 8.11272 8.79004 9.27169 10.13499 10.28978 11.41075 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044699 B = 0.002681 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.256546 B =10441.997751 C =10631.694830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.048 4.048 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.743 5.743 10 C 0.166 3.834 11 C -0.098 4.098 12 H 0.073 0.927 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.141 3.859 16 H 0.090 0.910 17 N -0.717 5.717 18 C 0.563 3.437 19 O -0.544 6.544 20 C -0.194 4.194 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.121 4.121 26 H 0.255 0.745 27 H 0.367 0.633 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -25.601 -3.857 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.245 4.245 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.389 5.389 10 C 0.038 3.962 11 C -0.117 4.117 12 H 0.091 0.909 13 C -0.149 4.149 14 C -0.171 4.171 15 C 0.037 3.963 16 H 0.108 0.892 17 N -0.367 5.367 18 C 0.351 3.649 19 O -0.423 6.423 20 C -0.197 4.197 21 C -0.096 4.096 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.129 4.129 25 C -0.160 4.160 26 H 0.066 0.934 27 H 0.200 0.800 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.155 0.845 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.184 -24.003 -3.020 24.221 hybrid contribution -0.147 -1.600 -0.418 1.660 sum -1.331 -25.603 -3.439 25.867 Atomic orbital electron populations 1.70849 1.06033 1.28390 1.53924 1.25778 0.97087 1.00997 1.00619 0.83190 0.73845 0.75317 0.76241 1.22328 1.22193 1.21402 1.20074 0.92034 0.85908 1.48067 0.91811 1.42358 1.04878 1.00958 1.90687 1.20628 0.92961 0.84836 0.97762 1.22170 0.97705 0.93905 0.97960 0.90853 1.22465 1.00277 0.94613 0.97533 1.22782 0.97568 0.95690 1.01096 1.21771 0.95565 0.85168 0.93845 0.89192 1.46167 1.67136 1.11541 1.11906 1.18009 0.77324 0.82461 0.87077 1.90790 1.53117 1.83638 1.14745 1.21886 1.06063 0.95120 0.96644 1.24054 0.91958 0.93671 0.99870 1.21487 1.01570 0.98636 0.92773 1.22461 1.02089 0.94435 0.97061 1.21297 1.02322 0.97827 0.91492 1.22455 0.99776 0.94590 0.99169 0.93409 0.80025 0.96473 0.96168 0.91090 0.91178 0.91422 0.91523 0.76560 0.84484 0.90229 0.89618 0.90741 0.90474 0.90107 0.90781 0.91350 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.70 13.70 55.49 0.76 -28.94 16 2 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 3 Si 1.08 26.37 29.92 -169.99 -5.09 21.29 16 4 H -0.30 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.33 -9.51 9.99 -15.06 -0.15 -9.66 16 8 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.74 -19.04 5.46 -59.91 -0.33 -19.36 16 10 C 0.17 3.37 5.54 -4.05 -0.02 3.35 16 11 C -0.10 -1.56 2.90 -88.96 -0.26 -1.81 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.74 6.10 -24.74 -0.15 -1.89 16 14 C -0.13 -1.81 6.52 -25.07 -0.16 -1.97 16 15 C 0.14 1.78 3.23 -66.70 -0.22 1.57 16 16 H 0.09 1.26 7.61 -51.93 -0.39 0.86 16 17 N -0.72 -7.93 5.04 -53.79 -0.27 -8.20 16 18 C 0.56 7.12 7.78 -12.67 -0.10 7.02 16 19 O -0.54 -8.95 16.44 5.27 0.09 -8.86 16 20 C -0.19 -1.87 6.09 -102.73 -0.63 -2.49 16 21 C -0.08 -0.65 10.43 -36.01 -0.38 -1.02 16 22 C -0.11 -0.62 6.80 -26.86 -0.18 -0.80 16 23 C -0.12 -0.66 7.17 -24.97 -0.18 -0.84 16 24 C -0.09 -0.62 6.04 -26.75 -0.16 -0.78 16 25 C -0.12 -1.53 6.15 -25.50 -0.16 -1.68 16 26 H 0.25 7.85 6.77 -40.82 -0.28 7.58 16 27 H 0.37 9.54 6.41 -40.82 -0.26 9.28 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 30 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 34 H 0.40 3.47 7.29 -40.82 -0.30 3.17 16 35 H 0.14 1.21 8.03 -52.49 -0.42 0.79 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.44 7.82 -51.93 -0.41 0.04 16 42 H 0.07 0.74 7.61 -51.93 -0.39 0.35 16 43 H 0.08 0.97 7.84 -51.93 -0.41 0.57 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -34.27 346.73 -9.57 -43.84 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.12 Total: 7.52 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.84 Total: -12.52 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.16 Total: -56.50 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.09 Total: 21.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.27 -9.57 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds