Wall clock time and date at job start Mon Mar 30 2020 23:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.43338 * 54.29803 * 11 10 9 13 13 C 1.54885 * 110.48653 * 291.75792 * 11 10 9 14 14 C 1.54889 * 102.74980 * 203.37789 * 13 11 10 15 15 C 1.54273 * 104.19421 * 37.93859 * 14 13 11 16 16 H 1.09002 * 110.02932 * 95.72854 * 15 14 13 17 17 N 1.46499 * 110.03092 * 217.10609 * 15 14 13 18 18 C 1.34783 * 120.00118 * 273.54523 * 17 15 14 19 19 O 1.21612 * 119.99846 * 0.02562 * 18 17 15 20 20 C 1.47093 * 119.99881 * 180.02562 * 18 17 15 21 21 C 1.32617 * 124.62100 * 180.02562 * 20 18 17 22 22 C 1.51107 * 110.76036 * 180.02562 * 21 20 18 23 23 C 1.54573 * 104.84371 * 16.59687 * 22 21 20 24 24 C 1.51113 * 124.62375 * 359.73156 * 20 18 17 25 25 C 1.54083 * 106.62339 * 336.28168 * 15 14 13 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 29 29 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 30 30 H 1.09003 * 110.75649 * 321.68843 * 13 11 10 31 31 H 1.09003 * 110.75759 * 85.06339 * 13 11 10 32 32 H 1.08995 * 110.48930 * 156.61827 * 14 13 11 33 33 H 1.08999 * 110.48547 * 279.13668 * 14 13 11 34 34 H 0.97000 * 120.00041 * 93.55250 * 17 15 14 35 35 H 1.07998 * 124.61695 * 0.02562 * 21 20 18 36 36 H 1.09000 * 110.36561 * 135.43979 * 22 21 20 37 37 H 1.09006 * 110.36528 * 257.64572 * 22 21 20 38 38 H 1.09009 * 110.98430 * 93.07058 * 23 22 21 39 39 H 1.08995 * 110.99043 * 216.83745 * 23 22 21 40 40 H 1.09002 * 110.36421 * 282.23721 * 24 20 18 41 41 H 1.08996 * 110.36490 * 44.55106 * 24 20 18 42 42 H 1.08993 * 110.16120 * 240.87793 * 25 15 14 43 43 H 1.09003 * 110.00522 * 119.37673 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3637 -4.7214 -0.8320 13 6 0.3022 -4.8825 1.3450 14 6 -0.1501 -6.3624 1.4133 15 6 1.0380 -7.1487 0.8216 16 1 1.6837 -7.5085 1.6227 17 7 0.5470 -8.2779 0.0279 18 6 0.2773 -9.4553 0.6260 19 8 0.4411 -9.5801 1.8245 20 6 -0.2153 -10.5892 -0.1711 21 6 -0.5092 -11.7850 0.3213 22 6 -0.9860 -12.7122 -0.7725 23 6 -0.5410 -12.0341 -2.0883 24 6 -0.4613 -10.5485 -1.6615 25 6 1.8096 -6.1677 -0.0820 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 2.6853 -3.7142 -0.8912 29 1 2.6841 -3.7150 0.8887 30 1 0.9661 -4.6428 2.1756 31 1 -0.5598 -4.2154 1.3330 32 1 -0.3275 -6.6597 2.4468 33 1 -1.0475 -6.5151 0.8139 34 1 0.4160 -8.1783 -0.9280 35 1 -0.4199 -12.0588 1.3622 36 1 -0.5161 -13.6905 -0.6721 37 1 -2.0714 -12.8086 -0.7417 38 1 0.4325 -12.4054 -2.4090 39 1 -1.2867 -12.1734 -2.8709 40 1 -1.3997 -10.0377 -1.8772 41 1 0.3664 -10.0534 -2.1692 42 1 1.8169 -6.5302 -1.1099 43 1 2.8309 -6.0513 0.2806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755726878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:03 Heat of formation + Delta-G solvation = -52.448876 kcal Electronic energy + Delta-G solvation = -21164.674083 eV Core-core repulsion = 18015.188571 eV Total energy + Delta-G solvation = -3149.485512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27575 -39.63809 -38.47923 -36.76295 -34.93418 -32.92227 -30.55405 -30.12547 -29.50199 -28.46292 -26.00159 -24.24348 -23.48643 -21.85824 -21.35872 -21.04957 -19.79299 -19.28930 -18.16133 -17.50717 -16.94283 -16.61623 -16.17344 -15.77465 -15.69959 -15.29777 -15.20331 -14.93911 -14.46044 -13.87333 -13.69986 -13.59731 -13.09027 -12.96472 -12.78002 -12.63949 -12.60823 -12.46371 -12.11293 -12.07092 -12.00647 -11.87907 -11.82900 -11.74596 -11.61879 -11.21980 -11.00227 -10.92175 -10.21465 -9.83801 -9.10661 -8.41169 -5.34218 0.35752 1.57868 1.68794 1.83127 2.17599 2.23918 2.70938 3.38525 3.44485 3.47601 3.56571 3.64976 3.78323 3.97339 4.08439 4.21088 4.29640 4.33843 4.40123 4.41387 4.50601 4.58389 4.65522 4.74754 4.79614 4.81483 4.89249 4.95342 4.96979 4.99722 5.04786 5.13519 5.17815 5.26137 5.33968 5.37459 5.41926 5.52896 5.54751 5.58302 6.49157 6.52880 7.09710 7.18731 8.00701 8.11382 9.11351 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044699 B = 0.002681 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.256546 B =10441.997751 C =10631.694830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.106 4.106 3 Si 1.131 2.869 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.292 1.292 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.756 5.756 10 C 0.163 3.837 11 C -0.089 4.089 12 H 0.074 0.926 13 C -0.109 4.109 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.077 0.923 17 N -0.705 5.705 18 C 0.558 3.442 19 O -0.591 6.591 20 C -0.215 4.215 21 C -0.072 4.072 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.108 4.108 26 H 0.244 0.756 27 H 0.361 0.639 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 -27.047 -5.441 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.297 4.297 3 Si 0.956 3.044 4 H -0.212 1.212 5 H -0.198 1.198 6 H -0.218 1.218 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.401 5.401 10 C 0.037 3.963 11 C -0.108 4.108 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.161 4.161 15 C 0.043 3.957 16 H 0.096 0.904 17 N -0.356 5.356 18 C 0.348 3.652 19 O -0.474 6.474 20 C -0.218 4.218 21 C -0.092 4.092 22 C -0.141 4.141 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.147 4.147 26 H 0.055 0.945 27 H 0.193 0.807 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.650 -25.493 -4.641 25.920 hybrid contribution -0.296 -1.233 0.126 1.275 sum -0.946 -26.727 -4.515 27.122 Atomic orbital electron populations 1.70962 1.07155 1.27911 1.56400 1.27251 0.97163 1.04734 1.00584 0.82583 0.73559 0.71454 0.76851 1.21214 1.19767 1.21796 1.20437 0.92371 0.87260 1.46575 0.91687 1.42579 1.04867 1.02012 1.90627 1.20801 0.93713 0.84380 0.97393 1.22041 0.96954 0.93889 0.97886 0.90737 1.22384 0.99428 0.95744 0.97184 1.22674 0.98259 0.94171 1.01021 1.21546 0.94870 0.85523 0.93796 0.90446 1.46025 1.66393 1.10690 1.12478 1.18546 0.76543 0.83336 0.86765 1.90763 1.55302 1.84454 1.16858 1.21935 1.07375 0.94275 0.98205 1.24349 0.90474 0.94095 1.00294 1.21552 1.02306 0.98515 0.91758 1.22492 1.02911 0.93130 0.97113 1.21341 1.02902 0.99163 0.89241 1.22349 0.99258 0.92328 1.00732 0.94535 0.80682 0.96149 0.96551 0.92322 0.92844 0.92137 0.90809 0.74850 0.85630 0.88831 0.88384 0.90312 0.88797 0.89523 0.89970 0.88729 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.07 13.70 21.65 0.30 -61.77 16 2 C -0.11 -6.30 5.50 84.86 0.47 -5.83 16 3 Si 1.13 52.75 29.92 68.60 2.05 54.80 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 7 C -0.33 -19.33 9.99 84.03 0.84 -18.49 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 9 N -0.76 -39.03 5.46 -343.47 -1.88 -40.91 16 10 C 0.16 6.58 5.54 86.38 0.48 7.06 16 11 C -0.09 -2.73 2.90 -9.72 -0.03 -2.76 16 12 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 13 C -0.11 -3.46 6.10 31.88 0.19 -3.26 16 14 C -0.12 -3.30 6.52 31.67 0.21 -3.09 16 15 C 0.15 3.59 3.23 45.79 0.15 3.74 16 16 H 0.08 2.14 7.61 -2.39 -0.02 2.13 16 17 N -0.70 -14.57 5.04 -442.35 -2.23 -16.80 16 18 C 0.56 13.79 7.78 86.57 0.67 14.46 16 19 O -0.59 -19.76 16.44 -4.07 -0.07 -19.83 16 20 C -0.21 -3.85 6.09 -18.57 -0.11 -3.96 16 21 C -0.07 -1.15 10.43 24.65 0.26 -0.89 16 22 C -0.10 -0.92 6.80 30.51 0.21 -0.72 16 23 C -0.12 -0.91 7.17 31.74 0.23 -0.68 16 24 C -0.09 -0.98 6.04 30.58 0.18 -0.79 16 25 C -0.11 -2.52 6.15 31.39 0.19 -2.32 16 26 H 0.24 15.45 6.77 -92.71 -0.63 14.82 16 27 H 0.36 19.21 6.41 -92.71 -0.59 18.62 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 30 H 0.06 1.98 8.00 -2.39 -0.02 1.96 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 34 H 0.41 6.17 7.29 -92.71 -0.68 5.49 16 35 H 0.13 2.23 8.03 -2.91 -0.02 2.21 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.75 7.82 -2.39 -0.02 0.73 16 42 H 0.09 1.74 7.61 -2.39 -0.02 1.73 16 43 H 0.08 1.88 7.84 -2.39 -0.02 1.87 16 Total: -1.00 -74.53 346.73 1.98 -72.55 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.13 Total: 29.48 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 3.94 Total: -17.54 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -3.81 Total: -119.48 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.83 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -74.53 1.98 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.104 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds