Wall clock time and date at job start Mon Mar 30 2020 23:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99906 * 2 1 4 4 H 1.48495 * 109.47085 * 269.99522 * 3 2 1 5 5 H 1.48490 * 109.47287 * 29.99950 * 3 2 1 6 6 H 1.48502 * 109.46973 * 149.99913 * 3 2 1 7 7 C 1.38813 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99876 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99853 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.43946 * 303.91532 * 11 10 9 13 13 C 1.54266 * 110.48727 * 66.46196 * 11 10 9 14 14 C 1.53866 * 106.60188 * 142.41752 * 13 11 10 15 15 C 1.54264 * 106.60128 * 359.97438 * 14 13 11 16 16 H 1.08997 * 110.48639 * 95.19965 * 15 14 13 17 17 N 1.46500 * 110.48602 * 217.71292 * 15 14 13 18 18 C 1.34775 * 120.00282 * 273.54360 * 17 15 14 19 19 O 1.21612 * 119.99728 * 0.02562 * 18 17 15 20 20 C 1.47103 * 120.00390 * 179.97438 * 18 17 15 21 21 C 1.32607 * 124.62134 * 180.02562 * 20 18 17 22 22 C 1.51171 * 110.77206 * 180.02562 * 21 20 18 23 23 C 1.54575 * 104.81250 * 16.54975 * 22 21 20 24 24 C 1.51109 * 124.61747 * 0.02562 * 20 18 17 25 25 C 1.54888 * 104.19372 * 336.39003 * 15 14 13 26 26 H 0.96998 * 119.99760 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00059 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46723 * 60.00366 * 10 9 7 29 29 H 1.08994 * 109.47432 * 300.00551 * 10 9 7 30 30 H 1.08998 * 110.03168 * 23.12574 * 13 11 10 31 31 H 1.09009 * 110.06793 * 261.72310 * 13 11 10 32 32 H 1.09002 * 110.03057 * 240.71277 * 14 13 11 33 33 H 1.09002 * 110.03144 * 119.28446 * 14 13 11 34 34 H 0.97004 * 119.99806 * 93.54415 * 17 15 14 35 35 H 1.07999 * 124.62166 * 359.97438 * 21 20 18 36 36 H 1.09000 * 110.35916 * 257.72310 * 22 21 20 37 37 H 1.09001 * 110.39983 * 135.39165 * 22 21 20 38 38 H 1.09002 * 110.98444 * 216.89720 * 23 22 21 39 39 H 1.09001 * 110.98445 * 93.13730 * 23 22 21 40 40 H 1.09006 * 110.37029 * 44.57938 * 24 20 18 41 41 H 1.08996 * 110.36735 * 282.25868 * 24 20 18 42 42 H 1.08995 * 110.75539 * 156.25837 * 25 15 14 43 43 H 1.09002 * 110.75904 * 279.62984 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0638 -4.8196 0.0035 12 1 0.3843 -4.7380 0.8518 13 6 0.2728 -4.8559 -1.3204 14 6 0.0868 -6.3401 -1.6809 15 6 0.7718 -7.1542 -0.5639 16 1 0.0450 -7.4516 0.1919 17 7 1.4390 -8.3322 -1.1236 18 6 0.7492 -9.4763 -1.3019 19 8 -0.4272 -9.5305 -0.9986 20 6 1.4190 -10.6590 -1.8644 21 6 0.8301 -11.8276 -2.0788 22 6 1.8075 -12.8213 -2.6639 23 6 3.2018 -12.2139 -2.3873 24 6 2.8719 -10.7078 -2.2768 25 6 1.8121 -6.1757 0.0357 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0016 28 1 2.6854 -3.7141 0.8912 29 1 2.6841 -3.7149 -0.8887 30 1 0.8343 -4.3485 -2.1048 31 1 -0.6986 -4.3790 -1.1889 32 1 0.5581 -6.5531 -2.6404 33 1 -0.9748 -6.5838 -1.7236 34 1 2.3773 -8.2889 -1.3659 35 1 -0.2066 -12.0409 -1.8637 36 1 1.6454 -12.9260 -3.7367 37 1 1.7096 -13.7874 -2.1686 38 1 3.8823 -12.4047 -3.2171 39 1 3.6140 -12.5928 -1.4521 40 1 3.4976 -10.2373 -1.5183 41 1 3.0094 -10.2176 -3.2405 42 1 2.0604 -6.4556 1.0594 43 1 2.7084 -6.1375 -0.5836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755726879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:06 Heat of formation + Delta-G solvation = -31.601771 kcal Electronic energy + Delta-G solvation = -21085.519985 eV Core-core repulsion = 17936.938471 eV Total energy + Delta-G solvation = -3148.581514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27791 -38.59044 -37.52051 -34.82260 -33.39667 -31.12936 -29.80077 -28.85689 -28.74122 -27.37731 -24.40829 -22.57915 -22.16351 -21.25463 -20.52599 -19.27534 -18.80685 -17.40801 -17.04591 -16.39285 -15.86389 -15.52678 -14.93541 -14.64371 -14.39632 -13.52502 -13.36891 -13.19714 -13.18754 -13.03222 -12.81350 -12.39417 -12.02954 -12.01038 -11.79192 -11.62610 -11.56094 -11.49114 -11.04495 -10.83994 -10.71240 -10.45051 -10.34345 -10.08908 -9.99419 -9.89494 -9.64260 -9.32235 -9.01492 -8.83840 -6.88050 -5.73444 -3.01712 1.13685 3.11150 3.15998 3.45130 3.49982 3.51949 4.12633 4.18830 4.57504 4.60586 4.64506 4.78109 4.84324 4.91926 5.08972 5.24687 5.27833 5.37141 5.40361 5.51840 5.55155 5.58051 5.64692 5.68361 5.73699 5.75700 5.87759 5.95087 5.99347 6.14377 6.20028 6.22372 6.31702 6.37782 6.48248 6.63718 6.66910 6.84592 6.97366 7.44639 7.72219 8.14541 8.45780 9.56736 10.16053 10.50740 11.49554 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045977 B = 0.002657 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.858747 B =10535.343540 C =10882.798503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.092 0.908 17 N -0.716 5.716 18 C 0.563 3.437 19 O -0.543 6.543 20 C -0.194 4.194 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.120 4.120 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -25.844 -5.218 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.114 4.114 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.035 3.965 16 H 0.110 0.890 17 N -0.366 5.366 18 C 0.351 3.649 19 O -0.422 6.422 20 C -0.197 4.197 21 C -0.096 4.096 22 C -0.144 4.144 23 C -0.161 4.161 24 C -0.129 4.129 25 C -0.159 4.159 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.241 -25.734 -4.985 26.731 hybrid contribution 0.528 1.058 -0.160 1.193 sum 5.769 -24.676 -5.145 25.858 Atomic orbital electron populations 1.69661 1.05094 1.25590 1.57892 1.24744 0.95527 0.97674 1.03186 0.86191 0.78628 0.83911 0.77478 1.21771 1.21796 1.20809 1.19234 0.90998 0.84254 1.42466 0.91269 1.42355 1.05927 0.99937 1.89397 1.20665 0.93013 0.85323 0.97592 1.22096 0.97547 0.93617 0.98159 0.90493 1.22101 1.00951 0.94355 0.97600 1.22552 1.00807 0.95633 0.98135 1.21948 0.95085 0.83789 0.95687 0.88960 1.46017 1.14235 1.11532 1.64837 1.17999 0.86212 0.82709 0.77958 1.90796 1.15780 1.84340 1.51273 1.21884 0.97420 0.94917 1.05434 1.24063 0.99677 0.93578 0.92296 1.21498 0.93322 0.98304 1.01323 1.22428 0.96668 0.94585 1.02400 1.21259 0.92327 0.97557 1.01778 1.22741 0.97692 0.94571 1.00889 0.93545 0.78212 0.96507 0.96385 0.91130 0.91481 0.91899 0.91662 0.76582 0.84480 0.89641 0.90224 0.90480 0.90785 0.90726 0.90156 0.91069 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.72 5.44 -59.91 -0.33 -19.05 16 10 C 0.16 3.24 5.58 -4.04 -0.02 3.22 16 11 C -0.09 -1.53 2.93 -88.95 -0.26 -1.79 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.78 6.04 -25.62 -0.15 -1.94 16 14 C -0.13 -1.83 6.53 -25.62 -0.17 -2.00 16 15 C 0.14 1.78 3.16 -66.27 -0.21 1.57 16 16 H 0.09 1.32 7.66 -51.93 -0.40 0.92 16 17 N -0.72 -7.87 5.11 -53.38 -0.27 -8.15 16 18 C 0.56 7.13 7.79 -12.67 -0.10 7.03 16 19 O -0.54 -9.00 16.47 5.27 0.09 -8.92 16 20 C -0.19 -1.85 6.09 -102.73 -0.63 -2.47 16 21 C -0.08 -0.65 10.43 -35.98 -0.38 -1.03 16 22 C -0.11 -0.61 6.80 -26.83 -0.18 -0.79 16 23 C -0.12 -0.64 7.16 -25.08 -0.18 -0.82 16 24 C -0.09 -0.60 6.02 -26.86 -0.16 -0.76 16 25 C -0.12 -1.51 5.92 -24.72 -0.15 -1.65 16 26 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.38 10.34 7.52 -40.82 -0.31 10.03 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 30 H 0.07 1.21 7.77 -51.93 -0.40 0.80 16 31 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.36 7.54 -40.82 -0.31 3.05 16 35 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.43 7.83 -51.93 -0.41 0.02 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -33.17 348.86 -9.65 -42.82 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.27 Total: 7.21 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.83 Total: -8.89 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.13 Total: -55.07 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.17 -9.65 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds