Wall clock time and date at job start Mon Mar 30 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99906 * 2 1 4 4 H 1.48495 * 109.47085 * 269.99522 * 3 2 1 5 5 H 1.48490 * 109.47287 * 29.99950 * 3 2 1 6 6 H 1.48502 * 109.46973 * 149.99913 * 3 2 1 7 7 C 1.38813 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99876 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99853 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.43946 * 303.91532 * 11 10 9 13 13 C 1.54266 * 110.48727 * 66.46196 * 11 10 9 14 14 C 1.53866 * 106.60188 * 142.41752 * 13 11 10 15 15 C 1.54264 * 106.60128 * 359.97438 * 14 13 11 16 16 H 1.08997 * 110.48639 * 95.19965 * 15 14 13 17 17 N 1.46500 * 110.48602 * 217.71292 * 15 14 13 18 18 C 1.34775 * 120.00282 * 273.54360 * 17 15 14 19 19 O 1.21612 * 119.99728 * 0.02562 * 18 17 15 20 20 C 1.47103 * 120.00390 * 179.97438 * 18 17 15 21 21 C 1.32607 * 124.62134 * 180.02562 * 20 18 17 22 22 C 1.51171 * 110.77206 * 180.02562 * 21 20 18 23 23 C 1.54575 * 104.81250 * 16.54975 * 22 21 20 24 24 C 1.51109 * 124.61747 * 0.02562 * 20 18 17 25 25 C 1.54888 * 104.19372 * 336.39003 * 15 14 13 26 26 H 0.96998 * 119.99760 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00059 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.46723 * 60.00366 * 10 9 7 29 29 H 1.08994 * 109.47432 * 300.00551 * 10 9 7 30 30 H 1.08998 * 110.03168 * 23.12574 * 13 11 10 31 31 H 1.09009 * 110.06793 * 261.72310 * 13 11 10 32 32 H 1.09002 * 110.03057 * 240.71277 * 14 13 11 33 33 H 1.09002 * 110.03144 * 119.28446 * 14 13 11 34 34 H 0.97004 * 119.99806 * 93.54415 * 17 15 14 35 35 H 1.07999 * 124.62166 * 359.97438 * 21 20 18 36 36 H 1.09000 * 110.35916 * 257.72310 * 22 21 20 37 37 H 1.09001 * 110.39983 * 135.39165 * 22 21 20 38 38 H 1.09002 * 110.98444 * 216.89720 * 23 22 21 39 39 H 1.09001 * 110.98445 * 93.13730 * 23 22 21 40 40 H 1.09006 * 110.37029 * 44.57938 * 24 20 18 41 41 H 1.08996 * 110.36735 * 282.25868 * 24 20 18 42 42 H 1.08995 * 110.75539 * 156.25837 * 25 15 14 43 43 H 1.09002 * 110.75904 * 279.62984 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0638 -4.8196 0.0035 12 1 0.3843 -4.7380 0.8518 13 6 0.2728 -4.8559 -1.3204 14 6 0.0868 -6.3401 -1.6809 15 6 0.7718 -7.1542 -0.5639 16 1 0.0450 -7.4516 0.1919 17 7 1.4390 -8.3322 -1.1236 18 6 0.7492 -9.4763 -1.3019 19 8 -0.4272 -9.5305 -0.9986 20 6 1.4190 -10.6590 -1.8644 21 6 0.8301 -11.8276 -2.0788 22 6 1.8075 -12.8213 -2.6639 23 6 3.2018 -12.2139 -2.3873 24 6 2.8719 -10.7078 -2.2768 25 6 1.8121 -6.1757 0.0357 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0016 28 1 2.6854 -3.7141 0.8912 29 1 2.6841 -3.7149 -0.8887 30 1 0.8343 -4.3485 -2.1048 31 1 -0.6986 -4.3790 -1.1889 32 1 0.5581 -6.5531 -2.6404 33 1 -0.9748 -6.5838 -1.7236 34 1 2.3773 -8.2889 -1.3659 35 1 -0.2066 -12.0409 -1.8637 36 1 1.6454 -12.9260 -3.7367 37 1 1.7096 -13.7874 -2.1686 38 1 3.8823 -12.4047 -3.2171 39 1 3.6140 -12.5928 -1.4521 40 1 3.4976 -10.2373 -1.5183 41 1 3.0094 -10.2176 -3.2405 42 1 2.0604 -6.4556 1.0594 43 1 2.7084 -6.1375 -0.5836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755726879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:05 Heat of formation + Delta-G solvation = -52.649135 kcal Electronic energy + Delta-G solvation = -21086.432667 eV Core-core repulsion = 17936.938471 eV Total energy + Delta-G solvation = -3149.494196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21623 -39.56558 -38.44442 -36.46799 -34.83404 -32.96685 -30.57074 -30.12032 -29.49019 -28.50891 -26.17463 -23.96220 -23.45636 -21.87401 -21.55762 -20.53678 -19.71954 -19.07750 -18.11881 -17.47539 -16.76562 -16.59771 -16.40314 -15.89153 -15.53149 -15.19595 -15.05695 -14.57257 -14.30623 -13.86216 -13.57297 -13.41576 -13.30628 -12.96943 -12.89936 -12.77747 -12.58636 -12.51144 -12.17482 -12.08861 -12.04229 -11.98219 -11.79680 -11.72497 -11.51850 -11.34657 -10.99320 -10.91390 -10.18088 -9.81102 -8.97878 -7.94100 -5.22702 0.38273 1.47391 1.49491 1.57926 2.18854 2.26453 2.57133 3.39284 3.48865 3.57827 3.63030 3.68178 3.86568 4.10900 4.17413 4.23456 4.32600 4.37031 4.47702 4.49158 4.57118 4.66065 4.77893 4.81090 4.84526 4.89539 4.92541 4.99464 5.01555 5.13173 5.14517 5.20179 5.21969 5.35181 5.37488 5.40465 5.48855 5.53924 5.55527 5.58079 6.28353 6.56975 7.22394 7.34316 8.12128 8.34536 9.29754 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045977 B = 0.002657 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.858747 B =10535.343540 C =10882.798503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.090 4.090 12 H 0.066 0.934 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.146 3.854 16 H 0.076 0.924 17 N -0.703 5.703 18 C 0.558 3.442 19 O -0.592 6.592 20 C -0.214 4.214 21 C -0.074 4.074 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.104 4.104 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.415 0.585 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.570 -27.378 -5.794 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.110 4.110 12 H 0.084 0.916 13 C -0.145 4.145 14 C -0.162 4.162 15 C 0.041 3.959 16 H 0.094 0.906 17 N -0.353 5.353 18 C 0.348 3.652 19 O -0.475 6.475 20 C -0.216 4.216 21 C -0.094 4.094 22 C -0.141 4.141 23 C -0.157 4.157 24 C -0.126 4.126 25 C -0.142 4.142 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.950 -27.301 -5.568 28.975 hybrid contribution -0.319 1.457 0.011 1.491 sum 7.632 -25.844 -5.558 27.515 Atomic orbital electron populations 1.69829 1.06704 1.26026 1.59712 1.25607 0.96414 1.01246 1.03894 0.85114 0.77708 0.79360 0.77435 1.21380 1.22323 1.19269 1.19669 0.91560 0.85403 1.40902 0.90497 1.42601 1.05676 1.01289 1.89327 1.20837 0.93573 0.84373 0.97753 1.21984 0.96981 0.94289 0.97706 0.91565 1.21999 0.99702 0.95559 0.97270 1.22446 1.00492 0.94188 0.99073 1.21702 0.94981 0.84337 0.94885 0.90575 1.45846 1.14853 1.10534 1.64085 1.18560 0.85744 0.83713 0.77219 1.90770 1.17979 1.85190 1.53536 1.21934 0.99277 0.93825 1.06609 1.24356 0.99766 0.94217 0.91058 1.21563 0.92697 0.97953 1.01894 1.22460 0.96513 0.93319 1.03378 1.21306 0.90097 0.98881 1.02301 1.22634 0.97615 0.91674 1.02314 0.94075 0.79530 0.96008 0.95703 0.92289 0.93445 0.90870 0.92763 0.74703 0.85757 0.88394 0.88895 0.88725 0.90384 0.89817 0.89413 0.89529 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.65 13.06 21.65 0.28 -60.36 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -38.45 5.44 -343.45 -1.87 -40.32 16 10 C 0.16 6.31 5.58 86.38 0.48 6.79 16 11 C -0.09 -2.86 2.93 -9.71 -0.03 -2.89 16 12 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.11 -3.45 6.04 31.32 0.19 -3.26 16 14 C -0.12 -3.38 6.53 31.31 0.20 -3.17 16 15 C 0.15 3.59 3.16 46.06 0.15 3.74 16 16 H 0.08 2.17 7.66 -2.39 -0.02 2.16 16 17 N -0.70 -14.37 5.11 -441.05 -2.25 -16.62 16 18 C 0.56 13.81 7.79 86.57 0.67 14.48 16 19 O -0.59 -20.07 16.47 -4.07 -0.07 -20.14 16 20 C -0.21 -3.78 6.09 -18.57 -0.11 -3.90 16 21 C -0.07 -1.18 10.43 24.68 0.26 -0.92 16 22 C -0.10 -0.90 6.80 30.53 0.21 -0.70 16 23 C -0.12 -0.85 7.16 31.67 0.23 -0.63 16 24 C -0.09 -0.92 6.02 30.51 0.18 -0.73 16 25 C -0.10 -2.38 5.92 31.90 0.19 -2.19 16 26 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.37 20.62 7.52 -92.71 -0.70 19.92 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 30 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.42 5.86 7.54 -92.71 -0.70 5.16 16 35 H 0.12 2.23 8.03 -2.91 -0.02 2.21 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.70 7.83 -2.38 -0.02 0.68 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.82 7.94 -2.39 -0.02 1.80 16 Total: -1.00 -72.47 348.86 1.65 -70.82 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.40 Total: 28.50 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.93 Total: -10.48 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -3.84 Total: -117.30 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -72.47 1.65 -70.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.175 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds