Wall clock time and date at job start Mon Mar 30 2020 23:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48495 * 109.47392 * 270.00174 * 3 2 1 5 5 H 1.48506 * 109.46777 * 30.00386 * 3 2 1 6 6 H 1.48503 * 109.47063 * 149.99860 * 3 2 1 7 7 C 1.38818 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99382 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99777 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46847 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.54016 * 56.15571 * 11 10 9 13 13 C 1.54267 * 110.48667 * 293.54281 * 11 10 9 14 14 C 1.53876 * 106.59870 * 217.71131 * 13 11 10 15 15 C 1.54261 * 106.59990 * 0.02562 * 14 13 11 16 16 H 1.08999 * 110.48469 * 264.93049 * 15 14 13 17 17 N 1.46496 * 110.48711 * 142.28862 * 15 14 13 18 18 C 1.34770 * 120.00159 * 86.45173 * 17 15 14 19 19 O 1.21610 * 120.00308 * 0.02562 * 18 17 15 20 20 C 1.47105 * 119.99884 * 179.97438 * 18 17 15 21 21 C 1.32619 * 124.61783 * 179.69949 * 20 18 17 22 22 C 1.51117 * 110.75672 * 179.84379 * 21 20 18 23 23 C 1.54575 * 104.90165 * 343.80643 * 22 21 20 24 24 C 1.51104 * 124.62319 * 0.02562 * 20 18 17 25 25 C 1.54888 * 104.19672 * 23.60631 * 15 14 13 26 26 H 0.96999 * 120.00396 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.47769 * 60.00030 * 10 9 7 29 29 H 1.08996 * 109.47285 * 299.99233 * 10 9 7 30 30 H 1.08995 * 110.03032 * 98.42858 * 13 11 10 31 31 H 1.08998 * 110.03405 * 336.99797 * 13 11 10 32 32 H 1.08998 * 110.02768 * 119.28860 * 14 13 11 33 33 H 1.08994 * 110.03051 * 240.71540 * 14 13 11 34 34 H 0.97009 * 119.99534 * 266.45190 * 17 15 14 35 35 H 1.07999 * 124.62138 * 0.02562 * 21 20 18 36 36 H 1.08994 * 110.51764 * 224.85159 * 22 21 20 37 37 H 1.09004 * 110.24394 * 102.61745 * 22 21 20 38 38 H 1.08997 * 110.98250 * 266.70968 * 23 22 21 39 39 H 1.08999 * 111.01657 * 142.92235 * 23 22 21 40 40 H 1.09003 * 110.36807 * 315.43433 * 24 20 18 41 41 H 1.08997 * 110.37144 * 77.64536 * 24 20 18 42 42 H 1.09005 * 110.75648 * 80.37263 * 25 15 14 43 43 H 1.08999 * 110.75852 * 203.74195 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3834 -4.7408 -0.8503 13 6 0.2736 -4.8553 1.3223 14 6 0.0908 -6.3394 1.6853 15 6 0.7767 -7.1539 0.5692 16 1 0.0503 -7.4520 -0.1868 17 7 1.4465 -8.3297 1.1303 18 6 0.7591 -9.4747 1.3109 19 8 -0.4172 -9.5321 1.0077 20 6 1.4319 -10.6556 1.8738 21 6 0.8441 -11.8236 2.0952 22 6 1.8254 -12.8156 2.6752 23 6 3.2184 -12.2065 2.3960 24 6 2.8852 -10.7010 2.2851 25 6 1.8146 -6.1744 -0.0327 26 1 -0.4851 0.8400 -0.0004 27 1 0.3555 -2.3880 -0.0016 28 1 2.6840 -3.7150 0.8888 29 1 2.6852 -3.7142 -0.8911 30 1 -0.6987 -4.3808 1.1898 31 1 0.8346 -4.3456 2.1055 32 1 0.5631 -6.5499 2.6448 33 1 -0.9702 -6.5850 1.7291 34 1 2.3850 -8.2841 1.3718 35 1 -0.1937 -12.0375 1.8864 36 1 1.7282 -13.7824 2.1814 37 1 1.6656 -12.9208 3.7483 38 1 3.6297 -12.5856 1.4604 39 1 3.9007 -12.3950 3.2248 40 1 3.5093 -10.2295 1.5258 41 1 3.0227 -10.2083 3.2476 42 1 2.7112 -6.1334 0.5858 43 1 2.0627 -6.4554 -1.0563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755726880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:08 Heat of formation + Delta-G solvation = -31.594683 kcal Electronic energy + Delta-G solvation = -21086.298610 eV Core-core repulsion = 17937.717404 eV Total energy + Delta-G solvation = -3148.581206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27789 -38.59137 -37.52130 -34.82243 -33.39707 -31.12919 -29.79992 -28.85866 -28.74229 -27.37687 -24.40729 -22.58043 -22.16259 -21.25496 -20.52583 -19.27521 -18.80671 -17.40902 -17.04643 -16.39222 -15.86341 -15.52739 -14.93552 -14.64338 -14.39600 -13.52616 -13.37051 -13.19586 -13.18708 -13.03060 -12.81229 -12.39665 -12.02905 -12.01097 -11.79068 -11.62816 -11.55938 -11.49112 -11.04583 -10.83960 -10.71150 -10.45718 -10.33130 -10.09333 -9.99427 -9.89684 -9.64191 -9.32092 -9.01475 -8.83798 -6.88059 -5.73433 -3.01680 1.13669 3.11268 3.15946 3.45169 3.49966 3.51886 4.12580 4.19012 4.57410 4.60616 4.64471 4.78148 4.84321 4.91936 5.09058 5.24729 5.27791 5.37194 5.40454 5.51911 5.55233 5.58102 5.64787 5.68334 5.73694 5.75650 5.87757 5.95084 5.99400 6.14287 6.20026 6.22382 6.31708 6.37708 6.48296 6.63751 6.66894 6.84576 6.97388 7.44666 7.72248 8.14569 8.45766 9.56722 10.16089 10.50767 11.49573 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045884 B = 0.002658 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.087773 B =10531.106385 C =10879.320585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.139 3.861 16 H 0.092 0.908 17 N -0.716 5.716 18 C 0.563 3.437 19 O -0.543 6.543 20 C -0.194 4.194 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.121 4.121 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -25.825 5.284 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.114 4.114 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.035 3.965 16 H 0.110 0.890 17 N -0.366 5.366 18 C 0.351 3.649 19 O -0.422 6.422 20 C -0.197 4.197 21 C -0.096 4.096 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.129 4.129 25 C -0.159 4.159 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.155 0.845 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.266 -25.717 5.070 26.736 hybrid contribution 0.528 1.059 0.136 1.192 sum 5.794 -24.658 5.206 25.859 Atomic orbital electron populations 1.69659 1.05095 1.25595 1.57889 1.24744 0.95527 0.97677 1.03188 0.86191 0.78617 0.83907 0.77490 1.21762 1.21799 1.20815 1.19233 0.90998 0.84257 1.42469 0.91271 1.42353 1.05928 0.99939 1.89395 1.20667 0.93012 0.85320 0.97591 1.22100 0.97532 0.93630 0.98157 0.90485 1.22101 1.00956 0.94359 0.97587 1.22552 1.00804 0.95632 0.98139 1.21942 0.95067 0.83840 0.95665 0.88961 1.46013 1.14232 1.11575 1.64790 1.17998 0.86220 0.82691 0.77968 1.90795 1.15795 1.84303 1.51295 1.21889 0.97396 0.94955 1.05425 1.24053 0.99685 0.93595 0.92268 1.21484 0.93304 0.98310 1.01356 1.22427 0.96662 0.94573 1.02397 1.21260 0.92316 0.97564 1.01785 1.22747 0.97710 0.94582 1.00877 0.93544 0.78211 0.96385 0.96505 0.91483 0.91119 0.91899 0.91663 0.76576 0.84474 0.90213 0.89670 0.90778 0.90475 0.90746 0.90152 0.90847 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.72 5.44 -59.91 -0.33 -19.05 16 10 C 0.16 3.24 5.57 -4.04 -0.02 3.22 16 11 C -0.09 -1.53 2.93 -88.95 -0.26 -1.79 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.78 6.05 -25.61 -0.15 -1.94 16 14 C -0.13 -1.83 6.53 -25.61 -0.17 -2.00 16 15 C 0.14 1.78 3.16 -66.28 -0.21 1.57 16 16 H 0.09 1.32 7.67 -51.93 -0.40 0.92 16 17 N -0.72 -7.87 5.10 -53.39 -0.27 -8.15 16 18 C 0.56 7.13 7.79 -12.67 -0.10 7.03 16 19 O -0.54 -9.00 16.48 5.27 0.09 -8.92 16 20 C -0.19 -1.85 6.09 -102.73 -0.63 -2.47 16 21 C -0.08 -0.65 10.43 -36.00 -0.38 -1.03 16 22 C -0.11 -0.61 6.80 -26.85 -0.18 -0.79 16 23 C -0.12 -0.64 7.17 -25.07 -0.18 -0.82 16 24 C -0.09 -0.60 6.02 -26.85 -0.16 -0.76 16 25 C -0.12 -1.51 5.92 -24.73 -0.15 -1.66 16 26 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.38 10.34 7.52 -40.82 -0.31 10.03 16 28 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 32 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.36 7.54 -40.82 -0.31 3.05 16 35 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.43 7.83 -51.93 -0.41 0.02 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -33.16 348.85 -9.65 -42.81 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.27 Total: 7.21 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -2.83 Total: -8.90 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.13 Total: -55.07 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.16 -9.65 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.220 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds