Wall clock time and date at job start Mon Mar 30 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48495 * 109.47392 * 270.00174 * 3 2 1 5 5 H 1.48506 * 109.46777 * 30.00386 * 3 2 1 6 6 H 1.48503 * 109.47063 * 149.99860 * 3 2 1 7 7 C 1.38818 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99382 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99777 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46847 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.54016 * 56.15571 * 11 10 9 13 13 C 1.54267 * 110.48667 * 293.54281 * 11 10 9 14 14 C 1.53876 * 106.59870 * 217.71131 * 13 11 10 15 15 C 1.54261 * 106.59990 * 0.02562 * 14 13 11 16 16 H 1.08999 * 110.48469 * 264.93049 * 15 14 13 17 17 N 1.46496 * 110.48711 * 142.28862 * 15 14 13 18 18 C 1.34770 * 120.00159 * 86.45173 * 17 15 14 19 19 O 1.21610 * 120.00308 * 0.02562 * 18 17 15 20 20 C 1.47105 * 119.99884 * 179.97438 * 18 17 15 21 21 C 1.32619 * 124.61783 * 179.69949 * 20 18 17 22 22 C 1.51117 * 110.75672 * 179.84379 * 21 20 18 23 23 C 1.54575 * 104.90165 * 343.80643 * 22 21 20 24 24 C 1.51104 * 124.62319 * 0.02562 * 20 18 17 25 25 C 1.54888 * 104.19672 * 23.60631 * 15 14 13 26 26 H 0.96999 * 120.00396 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08994 * 109.47769 * 60.00030 * 10 9 7 29 29 H 1.08996 * 109.47285 * 299.99233 * 10 9 7 30 30 H 1.08995 * 110.03032 * 98.42858 * 13 11 10 31 31 H 1.08998 * 110.03405 * 336.99797 * 13 11 10 32 32 H 1.08998 * 110.02768 * 119.28860 * 14 13 11 33 33 H 1.08994 * 110.03051 * 240.71540 * 14 13 11 34 34 H 0.97009 * 119.99534 * 266.45190 * 17 15 14 35 35 H 1.07999 * 124.62138 * 0.02562 * 21 20 18 36 36 H 1.08994 * 110.51764 * 224.85159 * 22 21 20 37 37 H 1.09004 * 110.24394 * 102.61745 * 22 21 20 38 38 H 1.08997 * 110.98250 * 266.70968 * 23 22 21 39 39 H 1.08999 * 111.01657 * 142.92235 * 23 22 21 40 40 H 1.09003 * 110.36807 * 315.43433 * 24 20 18 41 41 H 1.08997 * 110.37144 * 77.64536 * 24 20 18 42 42 H 1.09005 * 110.75648 * 80.37263 * 25 15 14 43 43 H 1.08999 * 110.75852 * 203.74195 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3834 -4.7408 -0.8503 13 6 0.2736 -4.8553 1.3223 14 6 0.0908 -6.3394 1.6853 15 6 0.7767 -7.1539 0.5692 16 1 0.0503 -7.4520 -0.1868 17 7 1.4465 -8.3297 1.1303 18 6 0.7591 -9.4747 1.3109 19 8 -0.4172 -9.5321 1.0077 20 6 1.4319 -10.6556 1.8738 21 6 0.8441 -11.8236 2.0952 22 6 1.8254 -12.8156 2.6752 23 6 3.2184 -12.2065 2.3960 24 6 2.8852 -10.7010 2.2851 25 6 1.8146 -6.1744 -0.0327 26 1 -0.4851 0.8400 -0.0004 27 1 0.3555 -2.3880 -0.0016 28 1 2.6840 -3.7150 0.8888 29 1 2.6852 -3.7142 -0.8911 30 1 -0.6987 -4.3808 1.1898 31 1 0.8346 -4.3456 2.1055 32 1 0.5631 -6.5499 2.6448 33 1 -0.9702 -6.5850 1.7291 34 1 2.3850 -8.2841 1.3718 35 1 -0.1937 -12.0375 1.8864 36 1 1.7282 -13.7824 2.1814 37 1 1.6656 -12.9208 3.7483 38 1 3.6297 -12.5856 1.4604 39 1 3.9007 -12.3950 3.2248 40 1 3.5093 -10.2295 1.5258 41 1 3.0227 -10.2083 3.2476 42 1 2.7112 -6.1334 0.5858 43 1 2.0627 -6.4554 -1.0563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755726880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:07 Heat of formation + Delta-G solvation = -52.640318 kcal Electronic energy + Delta-G solvation = -21087.211217 eV Core-core repulsion = 17937.717404 eV Total energy + Delta-G solvation = -3149.493814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21625 -39.56681 -38.44480 -36.46776 -34.83435 -32.96666 -30.56997 -30.12123 -29.49166 -28.50853 -26.17409 -23.96068 -23.45741 -21.87425 -21.55796 -20.53637 -19.71921 -19.07801 -18.11983 -17.47612 -16.76498 -16.59763 -16.40275 -15.89167 -15.53058 -15.19605 -15.05714 -14.57172 -14.30708 -13.86523 -13.56786 -13.41524 -13.30132 -12.97310 -12.90670 -12.77378 -12.58698 -12.51544 -12.16511 -12.08645 -12.04475 -11.98066 -11.79710 -11.73053 -11.51659 -11.34764 -10.99277 -10.91329 -10.18071 -9.80949 -8.97879 -7.94078 -5.22659 0.38266 1.47369 1.49532 1.57882 2.18936 2.26431 2.57167 3.39305 3.48809 3.57831 3.63025 3.68320 3.86698 4.10815 4.17483 4.23428 4.32700 4.37056 4.47740 4.49205 4.57129 4.66097 4.77829 4.81157 4.84390 4.89527 4.92520 4.99588 5.01574 5.13153 5.14505 5.20240 5.21969 5.35180 5.37432 5.40561 5.48905 5.53959 5.55559 5.58137 6.28345 6.56991 7.22405 7.34310 8.12171 8.34571 9.29782 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045884 B = 0.002658 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.087773 B =10531.106385 C =10879.320585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.090 4.090 12 H 0.066 0.934 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.146 3.854 16 H 0.076 0.924 17 N -0.703 5.703 18 C 0.558 3.442 19 O -0.592 6.592 20 C -0.214 4.214 21 C -0.074 4.074 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.104 4.104 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.025 0.975 29 H 0.022 0.978 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.415 0.585 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.595 -27.357 5.878 29.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.145 4.145 14 C -0.162 4.162 15 C 0.041 3.959 16 H 0.094 0.906 17 N -0.353 5.353 18 C 0.348 3.652 19 O -0.475 6.475 20 C -0.217 4.217 21 C -0.094 4.094 22 C -0.141 4.141 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.143 4.143 26 H 0.059 0.941 27 H 0.205 0.795 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.143 0.857 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.976 -27.282 5.673 28.985 hybrid contribution -0.319 1.458 -0.044 1.493 sum 7.657 -25.825 5.629 27.518 Atomic orbital electron populations 1.69826 1.06704 1.26031 1.59709 1.25607 0.96414 1.01246 1.03896 0.85115 0.77715 0.79361 0.77428 1.21413 1.22313 1.19245 1.19669 0.91560 0.85406 1.40902 0.90499 1.42599 1.05677 1.01291 1.89324 1.20840 0.93573 0.84369 0.97751 1.21989 0.96975 0.94293 0.97711 0.91548 1.22000 0.99708 0.95562 0.97256 1.22446 1.00494 0.94186 0.99071 1.21697 0.94963 0.84384 0.94868 0.90573 1.45842 1.14848 1.10580 1.64038 1.18558 0.85755 0.83689 0.77231 1.90769 1.17994 1.85153 1.53558 1.21939 0.99247 0.93871 1.06601 1.24346 0.99786 0.94225 0.91022 1.21548 0.92671 0.97967 1.01934 1.22459 0.96510 0.93305 1.03373 1.21308 0.90087 0.98889 1.02307 1.22640 0.97629 0.91697 1.02297 0.94074 0.79529 0.95714 0.95996 0.93437 0.92283 0.90873 0.92760 0.74699 0.85747 0.88880 0.88421 0.90377 0.88719 0.89840 0.89410 0.88833 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.24 -13.75 9.99 84.04 0.84 -12.91 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -38.45 5.44 -343.46 -1.87 -40.32 16 10 C 0.16 6.31 5.57 86.38 0.48 6.79 16 11 C -0.09 -2.87 2.93 -9.71 -0.03 -2.89 16 12 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 13 C -0.11 -3.45 6.05 31.32 0.19 -3.26 16 14 C -0.12 -3.37 6.53 31.32 0.20 -3.17 16 15 C 0.15 3.59 3.16 46.06 0.15 3.73 16 16 H 0.08 2.17 7.67 -2.39 -0.02 2.16 16 17 N -0.70 -14.37 5.10 -441.07 -2.25 -16.62 16 18 C 0.56 13.81 7.79 86.57 0.67 14.48 16 19 O -0.59 -20.07 16.48 -4.06 -0.07 -20.14 16 20 C -0.21 -3.79 6.09 -18.57 -0.11 -3.90 16 21 C -0.07 -1.18 10.43 24.66 0.26 -0.92 16 22 C -0.10 -0.90 6.80 30.52 0.21 -0.70 16 23 C -0.12 -0.85 7.17 31.67 0.23 -0.63 16 24 C -0.09 -0.92 6.02 30.52 0.18 -0.73 16 25 C -0.10 -2.39 5.92 31.89 0.19 -2.20 16 26 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.37 20.61 7.52 -92.71 -0.70 19.92 16 28 H 0.02 0.96 8.05 -2.39 -0.02 0.94 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 32 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.42 5.86 7.54 -92.70 -0.70 5.17 16 35 H 0.12 2.24 8.03 -2.91 -0.02 2.21 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 0.70 7.83 -2.39 -0.02 0.68 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 1.82 7.94 -2.38 -0.02 1.80 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -72.46 348.85 1.65 -70.81 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.40 Total: 28.51 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.92 Total: -10.49 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -3.84 Total: -117.30 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -72.46 1.65 -70.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755726880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds