Wall clock time and date at job start Tue Mar 31 2020 00:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00373 * 2 1 4 4 H 1.48500 * 109.47039 * 274.98464 * 3 2 1 5 5 H 1.48500 * 109.47072 * 34.98335 * 3 2 1 6 6 H 1.48502 * 109.47280 * 154.98281 * 3 2 1 7 7 C 1.38819 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99950 * 186.83434 * 7 2 1 9 9 N 1.36931 * 119.99790 * 6.82516 * 7 2 1 10 10 C 1.47027 * 125.65017 * 353.85502 * 9 7 2 11 11 C 1.54323 * 107.26975 * 181.09278 * 10 9 7 12 12 C 1.55151 * 102.94583 * 22.19081 * 11 10 9 13 13 H 1.09003 * 111.03566 * 82.58582 * 12 11 10 14 14 C 1.52999 * 111.00621 * 206.41936 * 12 11 10 15 15 N 1.46496 * 109.47094 * 178.64653 * 14 12 11 16 16 C 1.34781 * 119.99742 * 180.02562 * 15 14 12 17 17 O 1.21276 * 119.99965 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99745 * 180.02562 * 16 15 14 19 19 C 1.53881 * 113.58721 * 180.02562 * 18 16 15 20 20 C 1.53253 * 86.88459 * 89.68749 * 19 18 16 21 21 C 1.52460 * 128.58557 * 165.10811 * 20 19 18 22 22 C 1.52585 * 128.58325 * 245.01504 * 20 19 18 23 23 C 1.53258 * 87.68916 * 25.08546 * 20 19 18 24 24 C 1.47427 * 125.65026 * 173.89077 * 9 7 2 25 25 H 0.97001 * 119.99554 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.88210 * 300.51004 * 10 9 7 27 27 H 1.08997 * 109.87942 * 61.51771 * 10 9 7 28 28 H 1.09006 * 110.71732 * 263.82379 * 11 10 9 29 29 H 1.09000 * 110.71757 * 140.55821 * 11 10 9 30 30 H 1.09003 * 109.46346 * 58.65385 * 14 12 11 31 31 H 1.08992 * 109.47416 * 298.65814 * 14 12 11 32 32 H 0.96998 * 119.99973 * 0.02562 * 15 14 12 33 33 H 1.09007 * 112.83085 * 48.88882 * 18 16 15 34 34 H 1.09001 * 113.64626 * 335.18831 * 19 18 16 35 35 H 1.09000 * 113.72827 * 204.19834 * 19 18 16 36 36 H 1.09002 * 117.51393 * 225.05211 * 21 20 19 37 37 H 1.09001 * 117.51415 * 10.11633 * 21 20 19 38 38 H 1.09003 * 117.54126 * 134.98567 * 22 20 19 39 39 H 1.09001 * 117.50744 * 349.85111 * 22 20 19 40 40 H 1.08999 * 113.64915 * 89.41862 * 23 20 19 41 41 H 1.09007 * 113.64294 * 220.41758 * 23 20 19 42 42 H 1.08997 * 110.36186 * 37.00215 * 24 9 7 43 43 H 1.08992 * 110.45939 * 274.72820 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2056 0.1108 9 7 1.3328 -2.3838 -0.1420 10 6 -0.1294 -2.5348 -0.1739 11 6 -0.4313 -4.0411 -0.3203 12 6 0.8668 -4.7085 0.2057 13 1 0.8609 -4.7718 1.2939 14 6 1.0652 -6.0905 -0.4200 15 7 2.3141 -6.6755 0.0742 16 6 2.6976 -7.8979 -0.3444 17 8 2.0090 -8.5133 -1.1305 18 6 3.9821 -8.4999 0.1643 19 6 4.2766 -9.8973 -0.4089 20 6 5.0140 -9.1833 -1.5470 21 6 5.9825 -9.7699 -2.5679 22 6 4.6635 -9.1452 -3.0315 23 6 5.2334 -8.0101 -0.5856 24 6 1.9487 -3.7154 -0.2868 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5612 -2.1585 0.7536 27 1 -0.5401 -1.9877 -1.0225 28 1 -0.6022 -4.3003 -1.3652 29 1 -1.2866 -4.3243 0.2933 30 1 1.1131 -5.9947 -1.5047 31 1 0.2295 -6.7355 -0.1488 32 1 2.8650 -6.1831 0.7026 33 1 4.0745 -8.4447 1.2491 34 1 3.3850 -10.4333 -0.7341 35 1 4.9278 -10.5020 0.2224 36 1 6.8997 -9.2160 -2.7680 37 1 6.0691 -10.8555 -2.6140 38 1 4.7133 -8.1805 -3.5366 39 1 3.8825 -9.8201 -3.3819 40 1 6.1511 -8.0882 -0.0027 41 1 5.1087 -7.0330 -1.0526 42 1 2.8421 -3.7895 0.3332 43 1 2.1950 -3.9097 -1.3306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028785708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:18 Heat of formation + Delta-G solvation = 30.377392 kcal Electronic energy + Delta-G solvation = -21675.025191 eV Core-core repulsion = 18529.131296 eV Total energy + Delta-G solvation = -3145.893895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63567 -38.48890 -37.43747 -34.58527 -33.75404 -32.45240 -29.85236 -28.35798 -26.01358 -25.84839 -24.55460 -22.98464 -22.47261 -20.61779 -19.94174 -19.73428 -18.46255 -17.03457 -16.67209 -16.05275 -15.72339 -15.32535 -14.98724 -14.72389 -14.54932 -14.05809 -13.58352 -13.15629 -12.84558 -12.55963 -12.34410 -12.05564 -11.95194 -11.74687 -11.71329 -11.59890 -11.38680 -10.91820 -10.80415 -10.47600 -10.41213 -10.20862 -10.13344 -10.01619 -9.93206 -9.88358 -9.65670 -9.53819 -8.90845 -8.59095 -6.83707 -5.73748 -3.06225 2.68601 3.23921 3.39095 3.44213 3.46253 3.64217 4.19247 4.38587 4.47494 4.48521 4.67132 4.74700 4.93300 5.14565 5.25301 5.30585 5.40382 5.44721 5.50153 5.52703 5.54098 5.64333 5.69417 5.77612 5.88636 5.90220 5.99636 6.02709 6.04548 6.07036 6.10399 6.34158 6.47811 6.51216 6.53116 6.69412 6.91134 7.54538 7.61901 7.63291 7.81541 8.25030 8.32523 9.20615 9.81353 10.48090 11.38449 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.003460 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.030113 B = 8090.889954 C = 8744.979061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.723 5.723 16 C 0.530 3.470 17 O -0.539 6.539 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.141 4.141 23 C -0.085 4.085 24 C 0.143 3.857 25 H 0.252 0.748 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.402 0.598 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 -18.416 0.220 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.097 0.903 14 C 0.010 3.990 15 N -0.374 5.374 16 C 0.316 3.684 17 O -0.416 6.416 18 C -0.157 4.157 19 C -0.118 4.118 20 C -0.159 4.159 21 C -0.207 4.207 22 C -0.178 4.178 23 C -0.123 4.123 24 C 0.017 3.983 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.899 -18.604 -0.331 20.214 hybrid contribution 0.673 1.262 0.336 1.469 sum 8.572 -17.342 0.005 19.345 Atomic orbital electron populations 1.69978 1.04936 1.25055 1.56693 1.24829 0.95701 0.97686 1.02134 0.86127 0.78669 0.83622 0.77525 1.21604 1.21762 1.20634 1.19056 0.91073 0.82607 1.43170 0.90482 1.44479 1.01701 1.01114 1.85980 1.21161 0.84405 0.88328 1.00952 1.22850 0.95471 0.99091 0.99936 1.22617 0.98572 0.92480 1.00107 0.90282 1.21370 0.85259 0.93439 0.98940 1.46039 1.25176 1.18181 1.48044 1.19979 0.86342 0.81172 0.80938 1.90666 1.55276 1.61315 1.34359 1.22285 0.93598 0.98824 1.00975 1.22348 1.00014 0.94427 0.95048 1.22172 1.03486 0.99505 0.90714 1.22821 0.94023 1.00256 1.03640 1.22718 0.98238 1.02505 0.94303 1.22433 0.96285 0.97500 0.96049 1.21540 0.93845 0.85901 0.97008 0.93741 0.93955 0.93574 0.92197 0.91988 0.91503 0.91803 0.76419 0.88070 0.89981 0.89244 0.88879 0.88900 0.88840 0.88494 0.88703 0.90770 0.94765 0.96346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.36 55.49 0.57 -26.44 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.61 -15.38 3.39 -170.07 -0.58 -15.96 16 10 C 0.18 4.25 5.38 -3.06 -0.02 4.24 16 11 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 12 C -0.12 -1.95 3.10 -88.48 -0.27 -2.22 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.94 5.12 -4.04 -0.02 1.92 16 15 N -0.72 -9.21 5.41 -60.30 -0.33 -9.53 16 16 C 0.53 7.04 7.10 -10.98 -0.08 6.96 16 17 O -0.54 -9.04 15.82 5.56 0.09 -8.95 16 18 C -0.14 -1.34 4.33 -90.85 -0.39 -1.73 16 19 C -0.08 -0.78 7.47 -26.14 -0.20 -0.98 16 20 C -0.16 -1.60 2.76 -154.74 -0.43 -2.03 16 21 C -0.17 -1.51 10.53 -26.94 -0.28 -1.79 16 22 C -0.14 -1.51 10.54 -26.88 -0.28 -1.80 16 23 C -0.09 -0.78 7.68 -26.14 -0.20 -0.99 16 24 C 0.14 2.86 6.41 -2.53 -0.02 2.84 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.04 1.12 7.55 -51.93 -0.39 0.73 16 27 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 28 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.40 4.41 8.34 -40.82 -0.34 4.07 16 33 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -31.96 347.05 -10.00 -41.96 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.37 Total: 1.75 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.60 Total: -5.05 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.33 Total: -51.93 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.96 -10.00 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028785708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.339 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds