Wall clock time and date at job start Tue Mar 31 2020 00:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00373 * 2 1 4 4 H 1.48500 * 109.47039 * 274.98464 * 3 2 1 5 5 H 1.48500 * 109.47072 * 34.98335 * 3 2 1 6 6 H 1.48502 * 109.47280 * 154.98281 * 3 2 1 7 7 C 1.38819 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99950 * 186.83434 * 7 2 1 9 9 N 1.36931 * 119.99790 * 6.82516 * 7 2 1 10 10 C 1.47027 * 125.65017 * 353.85502 * 9 7 2 11 11 C 1.54323 * 107.26975 * 181.09278 * 10 9 7 12 12 C 1.55151 * 102.94583 * 22.19081 * 11 10 9 13 13 H 1.09003 * 111.03566 * 82.58582 * 12 11 10 14 14 C 1.52999 * 111.00621 * 206.41936 * 12 11 10 15 15 N 1.46496 * 109.47094 * 178.64653 * 14 12 11 16 16 C 1.34781 * 119.99742 * 180.02562 * 15 14 12 17 17 O 1.21276 * 119.99965 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99745 * 180.02562 * 16 15 14 19 19 C 1.53881 * 113.58721 * 180.02562 * 18 16 15 20 20 C 1.53253 * 86.88459 * 89.68749 * 19 18 16 21 21 C 1.52460 * 128.58557 * 165.10811 * 20 19 18 22 22 C 1.52585 * 128.58325 * 245.01504 * 20 19 18 23 23 C 1.53258 * 87.68916 * 25.08546 * 20 19 18 24 24 C 1.47427 * 125.65026 * 173.89077 * 9 7 2 25 25 H 0.97001 * 119.99554 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.88210 * 300.51004 * 10 9 7 27 27 H 1.08997 * 109.87942 * 61.51771 * 10 9 7 28 28 H 1.09006 * 110.71732 * 263.82379 * 11 10 9 29 29 H 1.09000 * 110.71757 * 140.55821 * 11 10 9 30 30 H 1.09003 * 109.46346 * 58.65385 * 14 12 11 31 31 H 1.08992 * 109.47416 * 298.65814 * 14 12 11 32 32 H 0.96998 * 119.99973 * 0.02562 * 15 14 12 33 33 H 1.09007 * 112.83085 * 48.88882 * 18 16 15 34 34 H 1.09001 * 113.64626 * 335.18831 * 19 18 16 35 35 H 1.09000 * 113.72827 * 204.19834 * 19 18 16 36 36 H 1.09002 * 117.51393 * 225.05211 * 21 20 19 37 37 H 1.09001 * 117.51415 * 10.11633 * 21 20 19 38 38 H 1.09003 * 117.54126 * 134.98567 * 22 20 19 39 39 H 1.09001 * 117.50744 * 349.85111 * 22 20 19 40 40 H 1.08999 * 113.64915 * 89.41862 * 23 20 19 41 41 H 1.09007 * 113.64294 * 220.41758 * 23 20 19 42 42 H 1.08997 * 110.36186 * 37.00215 * 24 9 7 43 43 H 1.08992 * 110.45939 * 274.72820 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2056 0.1108 9 7 1.3328 -2.3838 -0.1420 10 6 -0.1294 -2.5348 -0.1739 11 6 -0.4313 -4.0411 -0.3203 12 6 0.8668 -4.7085 0.2057 13 1 0.8609 -4.7718 1.2939 14 6 1.0652 -6.0905 -0.4200 15 7 2.3141 -6.6755 0.0742 16 6 2.6976 -7.8979 -0.3444 17 8 2.0090 -8.5133 -1.1305 18 6 3.9821 -8.4999 0.1643 19 6 4.2766 -9.8973 -0.4089 20 6 5.0140 -9.1833 -1.5470 21 6 5.9825 -9.7699 -2.5679 22 6 4.6635 -9.1452 -3.0315 23 6 5.2334 -8.0101 -0.5856 24 6 1.9487 -3.7154 -0.2868 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5612 -2.1585 0.7536 27 1 -0.5401 -1.9877 -1.0225 28 1 -0.6022 -4.3003 -1.3652 29 1 -1.2866 -4.3243 0.2933 30 1 1.1131 -5.9947 -1.5047 31 1 0.2295 -6.7355 -0.1488 32 1 2.8650 -6.1831 0.7026 33 1 4.0745 -8.4447 1.2491 34 1 3.3850 -10.4333 -0.7341 35 1 4.9278 -10.5020 0.2224 36 1 6.8997 -9.2160 -2.7680 37 1 6.0691 -10.8555 -2.6140 38 1 4.7133 -8.1805 -3.5366 39 1 3.8825 -9.8201 -3.3819 40 1 6.1511 -8.0882 -0.0027 41 1 5.1087 -7.0330 -1.0526 42 1 2.8421 -3.7895 0.3332 43 1 2.1950 -3.9097 -1.3306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028785708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:17 Heat of formation + Delta-G solvation = 10.970282 kcal Electronic energy + Delta-G solvation = -21675.866747 eV Core-core repulsion = 18529.131296 eV Total energy + Delta-G solvation = -3146.735451 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54318 -39.69667 -38.80322 -35.98357 -34.59320 -34.20159 -31.64056 -29.96626 -27.50647 -26.65970 -26.04147 -24.27073 -23.22927 -22.08210 -21.46128 -21.02813 -19.39144 -18.78720 -17.78411 -17.29003 -16.70508 -16.64913 -16.25564 -15.97761 -15.71696 -15.56196 -15.03402 -14.57235 -14.03886 -13.83443 -13.77718 -13.40200 -13.26919 -13.05276 -12.79673 -12.72993 -12.65415 -12.49747 -12.35178 -12.00510 -11.89972 -11.85182 -11.55100 -11.45757 -11.22742 -10.99031 -10.83590 -10.69673 -10.46669 -10.02793 -8.89594 -7.86655 -5.21138 1.45698 1.47960 1.56567 1.67570 2.23039 2.49303 2.88959 3.32237 3.45963 3.60777 3.63723 3.70054 3.76856 3.91953 4.00026 4.03261 4.04012 4.15071 4.44739 4.60129 4.62652 4.71494 4.77992 4.79553 4.80362 4.83334 4.91459 4.93540 4.99576 5.05844 5.07304 5.15085 5.26052 5.27812 5.36063 5.38185 5.45894 5.51350 5.67356 5.76698 6.19799 6.62307 7.09765 7.31497 7.77673 8.42781 9.24524 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.003460 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.030113 B = 8090.889954 C = 8744.979061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.244 4.244 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.091 0.909 14 C 0.146 3.854 15 N -0.717 5.717 16 C 0.526 3.474 17 O -0.579 6.579 18 C -0.132 4.132 19 C -0.078 4.078 20 C -0.171 4.171 21 C -0.151 4.151 22 C -0.167 4.167 23 C -0.078 4.078 24 C 0.140 3.860 25 H 0.246 0.754 26 H 0.009 0.991 27 H 0.006 0.994 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.132 0.868 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -19.783 1.460 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.109 0.891 14 C 0.022 3.978 15 N -0.369 5.369 16 C 0.314 3.686 17 O -0.459 6.459 18 C -0.153 4.153 19 C -0.116 4.116 20 C -0.171 4.171 21 C -0.187 4.187 22 C -0.204 4.204 23 C -0.115 4.115 24 C 0.015 3.985 25 H 0.056 0.944 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 10.091 -19.994 0.923 22.416 hybrid contribution 0.004 1.658 -0.090 1.661 sum 10.095 -18.336 0.833 20.948 Atomic orbital electron populations 1.70201 1.06409 1.25272 1.58057 1.25692 0.96588 1.01120 1.02595 0.85078 0.78010 0.79211 0.77173 1.21689 1.22172 1.18873 1.19487 0.91705 0.83883 1.42202 0.89759 1.44812 1.02458 1.02506 1.85789 1.20929 0.83957 0.91825 0.97581 1.22718 0.97349 0.94843 1.01281 1.22420 0.95902 0.92460 1.00680 0.89081 1.21096 0.86564 0.92274 0.97915 1.45955 1.24654 1.18234 1.48039 1.20630 0.87118 0.80785 0.80116 1.90656 1.56775 1.62291 1.36142 1.22300 0.91773 0.98607 1.02664 1.22414 0.99531 0.94389 0.95247 1.22354 1.03864 1.00443 0.90447 1.22875 0.93282 1.00917 1.01664 1.22685 0.99725 1.02253 0.95697 1.22490 0.96980 0.96329 0.95697 1.21710 0.95293 0.84315 0.97166 0.94435 0.97228 0.97558 0.91329 0.89566 0.92900 0.91009 0.75115 0.84994 0.92305 0.86388 0.87751 0.87819 0.89817 0.89860 0.85866 0.92035 0.93184 0.96723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 10.36 21.65 0.22 -57.42 16 2 C -0.07 -3.82 5.48 84.86 0.47 -3.36 16 3 Si 0.98 45.66 29.56 68.60 2.03 47.69 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.24 -13.61 10.26 84.04 0.86 -12.75 16 8 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.63 -32.11 3.39 -691.99 -2.35 -34.46 16 10 C 0.18 9.02 5.38 86.73 0.47 9.48 16 11 C -0.12 -4.38 6.42 31.78 0.20 -4.18 16 12 C -0.10 -2.96 3.10 -9.40 -0.03 -2.99 16 13 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 14 C 0.15 3.96 5.12 86.38 0.44 4.40 16 15 N -0.72 -16.65 5.41 -463.07 -2.50 -19.15 16 16 C 0.53 13.08 7.10 87.66 0.62 13.70 16 17 O -0.58 -19.13 15.82 -3.02 -0.05 -19.17 16 18 C -0.13 -2.23 4.33 -10.95 -0.05 -2.27 16 19 C -0.08 -1.33 7.47 30.98 0.23 -1.10 16 20 C -0.17 -3.13 2.76 -52.33 -0.14 -3.27 16 21 C -0.15 -2.37 10.53 30.46 0.32 -2.05 16 22 C -0.17 -3.57 10.54 30.50 0.32 -3.24 16 23 C -0.08 -1.20 7.68 30.98 0.24 -0.96 16 24 C 0.14 5.42 6.41 86.85 0.56 5.98 16 25 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.01 0.52 7.55 -2.38 -0.02 0.50 16 27 H 0.01 0.35 7.36 -2.39 -0.02 0.33 16 28 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.05 1.61 8.10 -2.39 -0.02 1.60 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.41 7.81 8.34 -92.71 -0.77 7.03 16 33 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.06 1.29 7.42 -2.39 -0.02 1.28 16 35 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.12 8.09 -2.38 -0.02 1.10 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.01 0.60 8.00 -2.39 -0.02 0.58 16 Total: -1.00 -71.51 347.05 2.07 -69.44 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.21 Total: 15.68 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 4.51 Total: -2.61 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.63 Total: -111.03 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.05 Total: -19.17 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.51 2.07 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028785708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.413 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds