Wall clock time and date at job start Tue Mar 31 2020 00:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 115.54836 * 2 1 4 4 O 1.21280 * 119.99690 * 100.54606 * 3 2 1 5 5 N 1.34770 * 120.00233 * 280.54300 * 3 2 1 6 6 C 1.46596 * 119.68713 * 175.09143 * 5 3 2 7 7 C 1.53958 * 110.58199 * 227.80273 * 6 5 3 8 8 C 1.51518 * 107.34666 * 308.94902 * 7 6 5 9 9 H 1.08998 * 108.81144 * 306.54821 * 8 7 6 10 10 C 1.55364 * 107.78978 * 64.85127 * 8 7 6 11 11 H 1.08997 * 111.50630 * 50.39863 * 10 8 7 12 12 C 1.53740 * 100.21947 * 169.07534 * 10 8 7 13 13 C 1.55294 * 101.84171 * 320.90124 * 12 10 8 14 14 N 1.45469 * 117.34219 * 181.89286 * 8 7 6 15 15 C 1.36941 * 126.40794 * 30.60651 * 14 8 7 16 16 H 1.08000 * 119.99730 * 0.02562 * 15 14 8 17 17 C 1.38806 * 119.99905 * 180.02562 * 15 14 8 18 18 N 1.31614 * 120.00595 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99624 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47166 * 59.99913 * 19 17 15 21 21 H 1.48498 * 109.46931 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47131 * 299.99521 * 19 17 15 23 23 C 1.47719 * 119.68790 * 355.06927 * 5 3 2 24 24 C 1.52997 * 117.51928 * 145.70762 * 2 1 3 25 25 C 1.52993 * 60.00428 * 107.47788 * 24 2 1 26 26 H 1.08998 * 109.47652 * 64.27228 * 1 2 3 27 27 H 1.09002 * 109.47054 * 184.26998 * 1 2 3 28 28 H 1.08997 * 109.47377 * 304.26758 * 1 2 3 29 29 H 1.09000 * 109.25116 * 348.08189 * 6 5 3 30 30 H 1.08995 * 109.25468 * 107.51451 * 6 5 3 31 31 H 1.09001 * 109.87790 * 68.41037 * 7 6 5 32 32 H 1.08999 * 109.87790 * 189.48324 * 7 6 5 33 33 H 1.08991 * 110.95701 * 79.04161 * 12 10 8 34 34 H 1.09007 * 110.95136 * 202.76486 * 12 10 8 35 35 H 1.08999 * 109.92139 * 263.13796 * 13 12 10 36 36 H 1.08996 * 110.08538 * 141.92518 * 13 12 10 37 37 H 0.96996 * 120.00436 * 180.02562 * 18 17 15 38 38 H 1.08999 * 110.07301 * 247.17610 * 23 5 3 39 39 H 1.09004 * 110.07076 * 8.75215 * 23 5 3 40 40 H 1.09006 * 117.49564 * 214.97512 * 24 2 1 41 41 H 1.09000 * 117.50004 * 359.97438 * 24 2 1 42 42 H 1.08995 * 117.49971 * 252.50928 * 25 24 2 43 43 H 1.09001 * 117.49503 * 107.48352 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 2.6148 1.8238 1.0326 5 7 2.2779 2.0598 -1.1474 6 6 2.8126 3.4245 -1.1218 7 6 1.9044 4.3767 -1.9210 8 6 1.6759 3.7481 -3.2806 9 1 2.6425 3.5161 -3.7275 10 6 0.8824 2.4296 -3.0665 11 1 0.0031 2.5892 -2.4426 12 6 0.5046 2.0996 -4.5198 13 6 0.1761 3.5058 -5.0908 14 7 0.8722 4.4952 -4.2356 15 6 0.7766 5.8583 -4.3267 16 1 1.3330 6.4853 -3.6459 17 6 -0.0355 6.4338 -5.2942 18 7 -0.7141 5.6697 -6.1236 19 14 -0.1654 8.2932 -5.4189 20 1 1.1774 8.8661 -5.6905 21 1 -1.0890 8.6517 -6.5251 22 1 -0.6876 8.8398 -4.1407 23 6 1.8458 1.4445 -2.4190 24 6 2.2369 -1.1210 0.7645 25 6 2.2364 -1.1207 -0.7655 26 1 -0.3634 0.4461 -0.9257 27 1 -0.3633 -1.0248 0.0765 28 1 -0.3634 0.5786 0.8492 29 1 2.8728 3.7676 -0.0890 30 1 3.8107 3.4277 -1.5597 31 1 0.9523 4.5008 -1.4052 32 1 2.3929 5.3442 -2.0373 33 1 1.3453 1.6507 -5.0488 34 1 -0.3696 1.4495 -4.5573 35 1 -0.8997 3.6780 -5.0577 36 1 0.5333 3.5858 -6.1175 37 1 -1.2812 6.0719 -6.7998 38 1 2.7067 1.2821 -3.0675 39 1 1.3392 0.4993 -2.2241 40 1 3.1721 -0.8750 1.2676 41 1 1.6120 -1.8586 1.2680 42 1 1.6112 -1.8582 -1.2687 43 1 3.1713 -0.8745 -1.2689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036722321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:46 Heat of formation + Delta-G solvation = 18.067553 kcal Electronic energy + Delta-G solvation = -22967.999768 eV Core-core repulsion = 19821.572078 eV Total energy + Delta-G solvation = -3146.427690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56417 -38.58880 -36.82727 -35.23899 -32.57924 -31.80078 -29.55333 -28.86278 -28.06568 -25.21475 -23.99544 -23.07372 -22.49601 -21.39661 -20.05705 -19.68071 -18.43604 -16.86897 -16.45162 -15.88192 -15.41298 -14.99778 -14.72817 -14.33216 -14.05393 -13.68674 -13.42500 -13.16896 -12.98947 -12.59872 -12.50585 -12.37325 -12.21500 -11.77194 -11.67242 -11.52627 -11.40276 -10.82481 -10.79488 -10.70602 -10.61860 -10.17240 -10.15950 -10.09610 -9.89328 -9.72540 -9.62711 -9.32855 -8.63237 -8.48645 -6.84995 -5.72689 -3.05698 2.65680 3.02945 3.40053 3.44712 3.45355 3.53067 4.36630 4.48601 4.52554 4.66118 4.85615 4.95080 5.21584 5.31919 5.36136 5.41378 5.47947 5.49597 5.57504 5.59635 5.63925 5.68031 5.70769 5.82969 5.87900 5.91335 5.92430 6.05796 6.11174 6.19252 6.25272 6.38865 6.46881 6.59767 6.64236 6.85640 7.04994 7.49619 7.54614 7.58711 7.79267 8.23368 8.27106 9.18667 9.82115 10.49654 11.39837 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031228 B = 0.004667 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.418707 B = 5998.053147 C = 6487.283836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.155 4.155 3 C 0.548 3.452 4 O -0.547 6.547 5 N -0.600 5.600 6 C 0.116 3.884 7 C -0.129 4.129 8 C 0.168 3.832 9 H 0.019 0.981 10 C -0.125 4.125 11 H 0.080 0.920 12 C -0.135 4.135 13 C 0.176 3.824 14 N -0.594 5.594 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.119 3.881 24 C -0.147 4.147 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -14.023 8.255 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.158 4.158 3 C 0.335 3.665 4 O -0.425 6.425 5 N -0.332 5.332 6 C -0.007 4.007 7 C -0.168 4.168 8 C 0.059 3.941 9 H 0.036 0.964 10 C -0.146 4.146 11 H 0.098 0.902 12 C -0.174 4.174 13 C 0.052 3.948 14 N -0.319 5.319 15 C -0.354 4.354 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.003 4.003 24 C -0.185 4.185 25 C -0.203 4.203 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.011 -13.561 8.625 16.564 hybrid contribution -0.153 1.092 -0.260 1.133 sum 3.858 -12.469 8.365 15.502 Atomic orbital electron populations 1.21281 0.89769 1.02559 1.03050 1.21378 0.96396 0.89419 1.08580 1.19588 0.78294 0.85523 0.83091 1.90658 1.48979 1.70670 1.32206 1.48245 1.62731 1.14937 1.07327 1.21638 0.96496 0.80682 1.01854 1.21898 0.99793 0.98345 0.96748 1.20633 0.93578 0.90376 0.89468 0.96372 1.22650 0.98302 0.97009 0.96622 0.90157 1.22702 1.00165 1.00022 0.94489 1.21532 0.97417 0.82715 0.93128 1.44197 1.51679 1.01727 1.34286 1.18960 1.22729 0.80254 1.13490 0.90449 1.24771 0.99478 0.97840 0.98228 1.69917 1.32610 1.33002 1.21463 0.86236 0.77436 0.85139 0.77185 1.21194 1.21617 1.21193 1.21866 0.97922 0.96623 0.83930 1.23022 1.02377 0.98788 0.94295 1.23170 1.02364 0.99786 0.94950 0.91234 0.91484 0.91681 0.89580 0.92036 0.91531 0.90591 0.92311 0.92074 0.92747 0.94351 0.93727 0.91240 0.89369 0.88300 0.87998 0.87722 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.55 37.16 0.35 -0.76 16 2 C -0.15 -1.77 1.32 -155.66 -0.21 -1.97 16 3 C 0.55 8.28 6.85 -10.99 -0.08 8.21 16 4 O -0.55 -10.11 16.35 5.56 0.09 -10.02 16 5 N -0.60 -8.85 3.00 -172.49 -0.52 -9.36 16 6 C 0.12 1.80 6.30 -3.49 -0.02 1.78 16 7 C -0.13 -2.30 5.48 -26.98 -0.15 -2.45 16 8 C 0.17 3.31 2.57 -67.98 -0.17 3.14 16 9 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 10 C -0.13 -2.08 2.86 -89.37 -0.26 -2.33 16 11 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 12 C -0.13 -2.32 6.54 -25.13 -0.16 -2.48 16 13 C 0.18 4.11 5.45 -1.91 -0.01 4.10 16 14 N -0.59 -14.63 3.35 -163.10 -0.55 -15.17 16 15 C -0.23 -6.14 9.88 -15.06 -0.15 -6.29 16 16 H 0.08 2.03 7.21 -52.49 -0.38 1.65 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.67 10.43 55.49 0.58 -26.10 16 19 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.12 1.58 5.46 -3.76 -0.02 1.56 16 24 C -0.15 -1.44 9.84 -26.74 -0.26 -1.70 16 25 C -0.17 -1.48 8.22 -26.73 -0.22 -1.70 16 26 H 0.07 0.73 7.41 -51.93 -0.38 0.34 16 27 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 32 H 0.08 1.38 7.62 -51.93 -0.40 0.99 16 33 H 0.06 0.93 8.11 -51.93 -0.42 0.50 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.05 1.42 7.21 -51.93 -0.37 1.04 16 36 H 0.04 0.99 7.76 -51.93 -0.40 0.58 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.09 0.99 4.49 -51.93 -0.23 0.76 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -31.21 332.26 -9.00 -40.21 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.14 Total: -0.29 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.45 Total: -1.18 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.48 Total: -50.63 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.21 -9.00 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036722321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.278 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds