Wall clock time and date at job start Tue Mar 31 2020 00:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99408 * 2 1 4 4 H 1.48498 * 109.47005 * 264.66821 * 3 2 1 5 5 H 1.48490 * 109.47163 * 24.67381 * 3 2 1 6 6 H 1.48506 * 109.46888 * 144.67394 * 3 2 1 7 7 C 1.38808 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00052 * 336.24462 * 7 2 1 9 9 N 1.36943 * 119.99906 * 156.24939 * 7 2 1 10 10 C 1.47423 * 125.65047 * 162.04781 * 9 7 2 11 11 C 1.54913 * 104.83278 * 155.90304 * 10 9 7 12 12 C 1.55155 * 101.57968 * 37.00793 * 11 10 9 13 13 H 1.08997 * 110.72162 * 83.04275 * 12 11 10 14 14 C 1.53005 * 110.71644 * 206.13255 * 12 11 10 15 15 C 1.53000 * 109.46872 * 182.56138 * 14 12 11 16 16 N 1.46502 * 109.46871 * 180.02562 * 15 14 12 17 17 C 1.34777 * 119.99787 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00266 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99715 * 179.97438 * 17 16 15 20 20 H 1.08996 * 115.56739 * 325.68325 * 19 17 16 21 21 C 1.53004 * 117.49961 * 111.37834 * 19 17 16 22 22 C 1.52994 * 60.00093 * 107.48580 * 21 19 17 23 23 C 1.52993 * 138.58839 * 130.89148 * 22 21 19 24 24 C 1.52995 * 60.03118 * 130.90594 * 23 22 21 25 25 C 1.47324 * 125.61495 * 342.26198 * 9 7 2 26 26 H 0.96992 * 120.00023 * 359.97438 * 1 2 3 27 27 H 1.08997 * 110.36635 * 37.06102 * 10 9 7 28 28 H 1.09003 * 110.46019 * 274.78875 * 10 9 7 29 29 H 1.09003 * 111.00150 * 278.93474 * 11 10 9 30 30 H 1.09003 * 110.99806 * 155.08450 * 11 10 9 31 31 H 1.09000 * 109.47000 * 62.56416 * 14 12 11 32 32 H 1.09000 * 109.47057 * 302.56188 * 14 12 11 33 33 H 1.09000 * 109.47080 * 60.00327 * 15 14 12 34 34 H 1.09000 * 109.47320 * 299.99888 * 15 14 12 35 35 H 0.97004 * 120.00227 * 359.97438 * 16 15 14 36 36 H 1.08998 * 117.49892 * 359.97438 * 21 19 17 37 37 H 1.09003 * 117.49918 * 214.97560 * 21 19 17 38 38 H 1.09004 * 117.49752 * 23.40364 * 23 22 21 39 39 H 1.08996 * 117.49909 * 238.41183 * 23 22 21 40 40 H 1.09002 * 117.50353 * 107.47552 * 24 23 22 41 41 H 1.08997 * 117.49977 * 252.47792 * 24 23 22 42 42 H 1.09006 * 110.05964 * 61.68157 * 25 9 7 43 43 H 1.09000 * 109.85310 * 300.42674 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6102 1.9815 -1.3940 5 1 1.3957 2.6825 0.5844 6 1 3.4869 1.4755 0.8096 7 6 2.0103 -1.2021 -0.0005 8 1 1.5390 -2.0979 0.3758 9 7 3.2927 -1.2520 -0.4782 10 6 4.2680 -2.3248 -0.2110 11 6 5.2612 -2.2626 -1.3982 12 6 5.3572 -0.7337 -1.6442 13 1 6.0754 -0.2778 -0.9627 14 6 5.7334 -0.4420 -3.0983 15 6 5.8826 1.0681 -3.2934 16 7 6.2422 1.3474 -4.6859 17 6 6.4276 2.6192 -5.0919 18 8 6.2962 3.5324 -4.3046 19 6 6.7981 2.9064 -6.5241 20 1 7.4372 2.1644 -7.0025 21 6 5.7553 3.6083 -7.3964 22 6 6.9945 4.3704 -6.9229 23 6 8.0886 5.2618 -7.5137 24 6 7.3367 5.7056 -6.2574 25 6 3.9270 -0.2400 -1.3407 26 1 -0.4850 0.8400 0.0004 27 1 3.7688 -3.2933 -0.1843 28 1 4.7885 -2.1411 0.7290 29 1 4.8580 -2.7744 -2.2720 30 1 6.2307 -2.6751 -1.1185 31 1 4.9517 -0.8182 -3.7583 32 1 6.6768 -0.9340 -3.3352 33 1 6.6643 1.4443 -2.6334 34 1 4.9392 1.5601 -3.0565 35 1 6.3477 0.6170 -5.3154 36 1 4.8011 3.8619 -6.9345 37 1 5.7084 3.3279 -8.4487 38 1 7.8651 5.7830 -8.4446 39 1 9.1220 4.9368 -7.3934 40 1 7.8753 5.6723 -5.3103 41 1 6.6188 6.5191 -6.3615 42 1 3.9676 0.7190 -0.8241 43 1 3.3646 -0.1398 -2.2690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713736607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:09 Heat of formation + Delta-G solvation = 45.028204 kcal Electronic energy + Delta-G solvation = -21415.921795 eV Core-core repulsion = 18270.663206 eV Total energy + Delta-G solvation = -3145.258589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.09888 -38.32108 -37.59476 -35.19521 -33.10917 -32.73221 -31.34056 -29.29685 -27.32482 -25.01278 -23.84689 -22.63123 -22.27517 -20.80148 -20.22837 -19.90703 -19.19511 -17.19300 -16.94626 -16.22607 -15.89762 -15.42610 -15.22339 -14.86285 -14.51608 -14.25393 -13.72859 -13.48705 -12.97991 -12.71391 -12.63564 -12.37215 -12.11682 -11.89760 -11.71937 -11.54132 -11.33541 -11.06361 -10.79022 -10.51506 -10.48425 -10.45395 -10.36838 -10.24969 -10.12477 -9.80676 -9.72628 -9.26612 -9.07825 -8.57727 -7.01968 -5.91615 -3.19605 2.40231 2.92366 3.41190 3.46770 3.53915 3.56164 3.59383 4.02217 4.49624 4.55559 4.59541 4.79588 4.85259 4.95859 5.00549 5.16236 5.23934 5.27699 5.34905 5.38914 5.41370 5.42432 5.46523 5.54012 5.68338 5.70957 5.75134 5.82122 5.93510 5.95455 6.08217 6.15800 6.18082 6.36071 6.40616 6.51110 6.64514 6.82114 6.83107 7.44325 7.75693 8.19098 8.34697 8.87546 9.73407 10.22907 11.24901 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021136 B = 0.003829 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.455160 B = 7311.600580 C = 8156.873477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.611 5.611 10 C 0.132 3.868 11 C -0.124 4.124 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.114 3.886 16 N -0.726 5.726 17 C 0.536 3.464 18 O -0.532 6.532 19 C -0.142 4.142 20 H 0.123 0.877 21 C -0.100 4.100 22 C -0.202 4.202 23 C -0.130 4.130 24 C -0.114 4.114 25 C 0.123 3.877 26 H 0.263 0.737 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.400 0.600 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.025 0.975 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.787 3.570 -16.284 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.338 5.338 10 C 0.006 3.994 11 C -0.163 4.163 12 C -0.119 4.119 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.009 4.009 16 N -0.377 5.377 17 C 0.322 3.678 18 O -0.408 6.408 19 C -0.163 4.163 20 H 0.141 0.859 21 C -0.138 4.138 22 C -0.202 4.202 23 C -0.167 4.167 24 C -0.150 4.150 25 C -0.001 4.001 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.042 0.958 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.426 4.313 -15.636 23.807 hybrid contribution 0.470 0.571 -0.151 0.755 sum 17.896 4.884 -15.787 24.358 Atomic orbital electron populations 1.69858 1.05532 1.26564 1.53232 1.24944 0.95133 0.97356 1.00269 0.86934 0.78807 0.84658 0.77800 1.21297 1.23225 1.20699 1.18665 0.85242 0.95585 1.37466 0.88995 1.44890 1.10843 1.22234 1.55881 1.21608 0.90241 0.92963 0.94583 1.22778 0.99104 0.94709 0.99676 1.22112 0.97888 0.97003 0.94865 0.90584 1.21771 1.01999 0.94031 0.97618 1.21510 1.01434 0.96553 0.81403 1.45977 1.71483 1.07765 1.12507 1.19700 0.76828 0.82709 0.88592 1.90721 1.50409 1.44565 1.55153 1.21970 1.04904 0.95371 0.94014 0.85880 1.22677 0.92857 0.99189 0.99035 1.21155 1.00968 0.90543 1.07583 1.22762 0.95531 1.00374 0.97999 1.22612 1.01698 0.94072 0.96648 1.21785 0.90970 0.92796 0.94577 0.92746 0.93381 0.95930 0.91247 0.91616 0.90805 0.91314 0.91468 0.90954 0.76626 0.87938 0.87520 0.88345 0.88592 0.88187 0.88477 0.95774 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 3 Si 0.89 23.93 24.39 -169.99 -4.15 19.78 16 4 H -0.29 -7.53 6.83 56.52 0.39 -7.14 16 5 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 6 H -0.28 -7.49 6.87 56.52 0.39 -7.10 16 7 C -0.24 -7.08 10.57 -15.06 -0.16 -7.24 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -15.18 3.22 -169.83 -0.55 -15.73 16 10 C 0.13 2.60 7.23 -2.53 -0.02 2.58 16 11 C -0.12 -1.90 6.54 -24.58 -0.16 -2.06 16 12 C -0.10 -1.61 2.95 -88.79 -0.26 -1.87 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -1.48 4.72 -26.73 -0.13 -1.60 16 15 C 0.11 1.62 5.54 -4.04 -0.02 1.60 16 16 N -0.73 -8.56 5.56 -60.29 -0.33 -8.90 16 17 C 0.54 7.29 7.61 -10.99 -0.08 7.20 16 18 O -0.53 -9.59 16.25 5.55 0.09 -9.50 16 19 C -0.14 -1.41 6.19 -91.77 -0.57 -1.98 16 20 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.10 -0.92 10.23 -26.73 -0.27 -1.19 16 22 C -0.20 -2.06 5.06 -154.48 -0.78 -2.84 16 23 C -0.13 -1.03 10.53 -26.74 -0.28 -1.31 16 24 C -0.11 -1.16 10.17 -26.70 -0.27 -1.43 16 25 C 0.12 2.73 4.01 -2.90 -0.01 2.72 16 26 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.27 7.58 -51.93 -0.39 0.87 16 35 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.60 3.55 -51.93 -0.18 0.42 16 43 H 0.04 0.93 7.73 -51.93 -0.40 0.53 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -35.32 346.56 -9.29 -44.61 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.24 Total: -0.65 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.11 Total: -6.87 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.11 Total: -52.59 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.15 Total: 19.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.32 -9.29 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713736607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.639 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds