Wall clock time and date at job start Tue Mar 31 2020 00:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35743 * 116.99979 * 2 1 4 4 C 1.39287 * 120.84608 * 90.00190 * 3 2 1 5 5 C 1.50703 * 120.45308 * 359.97438 * 4 3 2 6 6 C 1.37953 * 119.09196 * 180.27725 * 4 3 2 7 7 N 1.31973 * 120.82146 * 359.45214 * 6 4 3 8 8 C 1.31948 * 121.86576 * 0.58287 * 7 6 4 9 9 C 1.50701 * 119.58978 * 179.70296 * 8 7 6 10 10 N 1.46902 * 109.47059 * 269.98100 * 9 8 7 11 11 C 1.46901 * 110.99914 * 66.04920 * 10 9 8 12 12 C 1.46897 * 110.99611 * 189.99986 * 10 9 8 13 13 H 1.08999 * 109.47099 * 300.00137 * 12 10 9 14 14 C 1.53000 * 109.47404 * 60.00005 * 12 10 9 15 15 C 1.50707 * 109.47100 * 180.02562 * 12 10 9 16 16 H 1.08002 * 119.99767 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00208 * 179.97438 * 15 12 10 18 18 N 1.31507 * 120.00160 * 180.02562 * 17 15 12 19 19 Si 1.86807 * 119.99823 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.46926 * 90.00137 * 19 17 15 21 21 H 1.48510 * 109.46831 * 210.00028 * 19 17 15 22 22 H 1.48497 * 109.47294 * 329.99714 * 19 17 15 23 23 C 1.37996 * 120.82067 * 359.69097 * 8 7 6 24 24 C 1.50699 * 120.45441 * 179.97438 * 23 8 7 25 25 H 1.08992 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46869 * 299.99903 * 1 2 3 27 27 H 1.08997 * 109.47442 * 59.99691 * 1 2 3 28 28 H 1.09002 * 109.47152 * 89.99960 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.00061 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00041 * 5 4 3 31 31 H 1.08003 * 119.58569 * 179.74745 * 6 4 3 32 32 H 1.09002 * 109.46718 * 29.98284 * 9 8 7 33 33 H 1.09000 * 109.46702 * 149.98385 * 9 8 7 34 34 H 1.09004 * 109.47286 * 59.99465 * 11 10 9 35 35 H 1.08998 * 109.46918 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46857 * 299.99408 * 11 10 9 37 37 H 1.09001 * 109.47349 * 179.97438 * 14 12 10 38 38 H 1.08995 * 109.47108 * 300.00438 * 14 12 10 39 39 H 1.09008 * 109.47039 * 59.99873 * 14 12 10 40 40 H 0.97000 * 120.00478 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47086 * 270.01599 * 24 23 8 42 42 H 1.09002 * 109.46883 * 30.01906 * 24 23 8 43 43 H 1.08999 * 109.47355 * 150.01190 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3695 1.8458 1.1958 5 6 2.0405 1.2012 2.5177 6 6 2.9903 3.0770 1.1536 7 7 3.2861 3.6460 0.0002 8 6 2.9948 3.0750 -1.1532 9 6 3.3501 3.7738 -2.4402 10 7 2.2313 4.6292 -2.8581 11 6 2.0270 5.7304 -1.9075 12 6 2.4396 5.1406 -4.2193 13 1 3.3582 5.7265 -4.2507 14 6 2.5501 3.9665 -5.1940 15 6 1.2747 6.0123 -4.6121 16 1 0.4612 6.1709 -3.9196 17 6 1.2479 6.6083 -5.8551 18 7 0.2317 7.3694 -6.1977 19 14 2.6553 6.3346 -7.0526 20 1 2.3668 5.1440 -7.8918 21 1 2.8044 7.5290 -7.9225 22 1 3.9136 6.1135 -6.2956 23 6 2.3689 1.8459 -1.1955 24 6 2.0394 1.2016 -2.5173 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.8767 0.5789 2.8366 29 1 1.1488 0.5838 2.4089 30 1 1.8580 1.9747 3.2637 31 1 3.2417 3.5794 2.0761 32 1 4.2387 4.3865 -2.2876 33 1 3.5487 3.0318 -3.2136 34 1 2.9307 6.3376 -1.8551 35 1 1.1932 6.3482 -2.2410 36 1 1.8056 5.3225 -0.9212 37 1 2.7042 4.3460 -6.2041 38 1 3.3928 3.3363 -4.9097 39 1 1.6314 3.3805 -5.1626 40 1 0.2130 7.7889 -7.0721 41 1 1.0443 1.5128 -2.8352 42 1 2.7719 1.5087 -3.2638 43 1 2.0638 0.1173 -2.4091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062797033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:16 Heat of formation + Delta-G solvation = 11.646873 kcal Electronic energy + Delta-G solvation = -22537.517992 eV Core-core repulsion = 19390.811880 eV Total energy + Delta-G solvation = -3146.706112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79622 -38.28777 -37.00597 -33.99053 -32.63216 -32.39828 -30.23960 -28.71304 -27.84999 -26.47357 -26.03752 -24.50735 -23.40261 -22.09948 -20.77703 -19.44222 -17.57430 -17.49100 -16.68349 -15.94843 -15.35748 -14.70836 -14.59776 -14.52783 -14.12243 -13.93835 -13.62674 -13.29908 -13.14221 -12.86042 -12.67981 -12.43830 -12.28464 -12.21959 -12.01721 -11.95310 -11.72450 -11.66234 -10.89354 -10.75863 -10.56314 -10.47894 -10.11739 -10.04247 -9.54654 -9.36736 -9.08797 -9.02150 -8.58952 -8.53715 -7.36275 -6.07080 -4.05752 1.11039 1.19096 3.25983 3.36436 3.38419 3.38701 3.88435 4.39304 4.40622 4.70335 4.76290 4.96881 5.04059 5.09137 5.16412 5.23901 5.26218 5.31835 5.40474 5.46138 5.53049 5.65469 5.73197 5.88987 5.91215 6.05077 6.14837 6.16981 6.30935 6.32797 6.36349 6.40533 6.47630 6.63514 6.67162 6.79097 6.97905 7.26478 7.31597 7.56728 7.92356 8.04540 8.16810 8.64444 8.99392 9.54592 11.05611 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.004568 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.957063 B = 6128.457099 C = 6425.467392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.332 6.332 3 C 0.129 3.871 4 C -0.165 4.165 5 C -0.101 4.101 6 C 0.102 3.898 7 N -0.476 5.476 8 C 0.156 3.844 9 C 0.090 3.910 10 N -0.518 5.518 11 C 0.040 3.960 12 C 0.182 3.818 13 H -0.001 1.001 14 C -0.147 4.147 15 C -0.504 4.504 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.015 0.985 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 -14.144 13.668 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.248 6.248 3 C 0.077 3.923 4 C -0.167 4.167 5 C -0.158 4.158 6 C -0.055 4.055 7 N -0.184 5.184 8 C 0.018 3.982 9 C -0.039 4.039 10 N -0.243 5.243 11 C -0.108 4.108 12 C 0.075 3.925 13 H 0.017 0.983 14 C -0.205 4.205 15 C -0.542 4.542 16 H 0.101 0.899 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.194 1.194 23 C -0.130 4.130 24 C -0.164 4.164 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.033 0.967 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.463 -13.661 13.497 19.514 hybrid contribution 0.824 -0.231 -0.678 1.092 sum 4.287 -13.891 12.819 19.383 Atomic orbital electron populations 1.23007 0.78406 1.03243 1.01232 1.85909 1.20123 1.24509 1.94276 1.18635 0.96303 0.85903 0.91433 1.21156 1.03130 0.96635 0.95817 1.20568 1.02007 1.00364 0.92846 1.22475 0.95238 0.91583 0.96213 1.67562 1.18034 1.34923 0.97914 1.21048 0.92979 0.90467 0.93677 1.21139 0.94005 0.97326 0.91405 1.61983 1.37993 1.20767 1.03548 1.22244 1.00897 0.93081 0.94600 1.19711 0.96812 0.92093 0.83920 0.98307 1.22248 1.00055 0.99210 0.98971 1.20959 1.05171 1.27007 1.01089 0.89892 1.24908 0.95527 0.94825 0.97831 1.69872 1.30286 1.32261 1.21353 0.86896 0.83612 0.76551 0.81365 1.20511 1.22497 1.19387 1.21017 1.00358 0.95502 0.96140 1.20706 1.03206 0.99700 0.92789 0.88663 0.93481 0.92894 0.91048 0.91621 0.91379 0.82826 0.93849 0.88949 0.96685 0.90089 0.93308 0.93923 0.95238 0.91916 0.92619 0.90174 0.90615 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.82 101.05 1.09 1.43 16 2 O -0.33 -4.13 8.90 -18.94 -0.17 -4.30 16 3 C 0.13 1.79 5.73 -38.82 -0.22 1.57 16 4 C -0.16 -2.08 5.91 -104.33 -0.62 -2.69 16 5 C -0.10 -0.92 9.84 36.01 0.35 -0.56 16 6 C 0.10 1.37 10.85 -17.60 -0.19 1.18 16 7 N -0.48 -7.81 9.21 -9.55 -0.09 -7.90 16 8 C 0.16 2.63 5.54 -82.63 -0.46 2.17 16 9 C 0.09 1.62 4.66 -4.97 -0.02 1.60 16 10 N -0.52 -10.90 4.61 -237.72 -1.10 -12.00 16 11 C 0.04 0.83 9.01 60.07 0.54 1.38 16 12 C 0.18 4.29 1.65 -68.86 -0.11 4.18 16 13 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 14 C -0.15 -3.14 8.47 37.16 0.31 -2.83 16 15 C -0.50 -13.96 8.46 -34.44 -0.29 -14.25 16 16 H 0.08 2.50 6.65 -52.49 -0.35 2.16 16 17 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 18 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 19 Si 0.89 21.77 24.37 -169.99 -4.14 17.63 16 20 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 21 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 23 C -0.13 -1.94 5.91 -104.34 -0.62 -2.56 16 24 C -0.11 -1.48 9.42 36.00 0.34 -1.14 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.41 7.34 -51.93 -0.38 0.03 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.09 1.55 3.62 -51.93 -0.19 1.36 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 1.84 6.10 -51.93 -0.32 1.53 16 36 H 0.05 0.95 6.56 -51.93 -0.34 0.61 16 37 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 38 H 0.03 0.53 6.20 -51.93 -0.32 0.21 16 39 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 43 H 0.07 0.81 7.62 -51.93 -0.40 0.42 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -31.16 331.76 -6.18 -37.34 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.47 Total: -0.69 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 0.01 Total: -8.62 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.41 Total: -46.35 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.17 Total: -4.30 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.16 -6.18 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062797033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.982 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds