Wall clock time and date at job start Tue Mar 31 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35743 * 116.99979 * 2 1 4 4 C 1.39287 * 120.84608 * 90.00190 * 3 2 1 5 5 C 1.50703 * 120.45308 * 359.97438 * 4 3 2 6 6 C 1.37953 * 119.09196 * 180.27725 * 4 3 2 7 7 N 1.31973 * 120.82146 * 359.45214 * 6 4 3 8 8 C 1.31948 * 121.86576 * 0.58287 * 7 6 4 9 9 C 1.50701 * 119.58978 * 179.70296 * 8 7 6 10 10 N 1.46902 * 109.47059 * 269.98100 * 9 8 7 11 11 C 1.46901 * 110.99914 * 66.04920 * 10 9 8 12 12 C 1.46897 * 110.99611 * 189.99986 * 10 9 8 13 13 H 1.08999 * 109.47099 * 300.00137 * 12 10 9 14 14 C 1.53000 * 109.47404 * 60.00005 * 12 10 9 15 15 C 1.50707 * 109.47100 * 180.02562 * 12 10 9 16 16 H 1.08002 * 119.99767 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00208 * 179.97438 * 15 12 10 18 18 N 1.31507 * 120.00160 * 180.02562 * 17 15 12 19 19 Si 1.86807 * 119.99823 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.46926 * 90.00137 * 19 17 15 21 21 H 1.48510 * 109.46831 * 210.00028 * 19 17 15 22 22 H 1.48497 * 109.47294 * 329.99714 * 19 17 15 23 23 C 1.37996 * 120.82067 * 359.69097 * 8 7 6 24 24 C 1.50699 * 120.45441 * 179.97438 * 23 8 7 25 25 H 1.08992 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46869 * 299.99903 * 1 2 3 27 27 H 1.08997 * 109.47442 * 59.99691 * 1 2 3 28 28 H 1.09002 * 109.47152 * 89.99960 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.00061 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00041 * 5 4 3 31 31 H 1.08003 * 119.58569 * 179.74745 * 6 4 3 32 32 H 1.09002 * 109.46718 * 29.98284 * 9 8 7 33 33 H 1.09000 * 109.46702 * 149.98385 * 9 8 7 34 34 H 1.09004 * 109.47286 * 59.99465 * 11 10 9 35 35 H 1.08998 * 109.46918 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46857 * 299.99408 * 11 10 9 37 37 H 1.09001 * 109.47349 * 179.97438 * 14 12 10 38 38 H 1.08995 * 109.47108 * 300.00438 * 14 12 10 39 39 H 1.09008 * 109.47039 * 59.99873 * 14 12 10 40 40 H 0.97000 * 120.00478 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47086 * 270.01599 * 24 23 8 42 42 H 1.09002 * 109.46883 * 30.01906 * 24 23 8 43 43 H 1.08999 * 109.47355 * 150.01190 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3695 1.8458 1.1958 5 6 2.0405 1.2012 2.5177 6 6 2.9903 3.0770 1.1536 7 7 3.2861 3.6460 0.0002 8 6 2.9948 3.0750 -1.1532 9 6 3.3501 3.7738 -2.4402 10 7 2.2313 4.6292 -2.8581 11 6 2.0270 5.7304 -1.9075 12 6 2.4396 5.1406 -4.2193 13 1 3.3582 5.7265 -4.2507 14 6 2.5501 3.9665 -5.1940 15 6 1.2747 6.0123 -4.6121 16 1 0.4612 6.1709 -3.9196 17 6 1.2479 6.6083 -5.8551 18 7 0.2317 7.3694 -6.1977 19 14 2.6553 6.3346 -7.0526 20 1 2.3668 5.1440 -7.8918 21 1 2.8044 7.5290 -7.9225 22 1 3.9136 6.1135 -6.2956 23 6 2.3689 1.8459 -1.1955 24 6 2.0394 1.2016 -2.5173 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.8767 0.5789 2.8366 29 1 1.1488 0.5838 2.4089 30 1 1.8580 1.9747 3.2637 31 1 3.2417 3.5794 2.0761 32 1 4.2387 4.3865 -2.2876 33 1 3.5487 3.0318 -3.2136 34 1 2.9307 6.3376 -1.8551 35 1 1.1932 6.3482 -2.2410 36 1 1.8056 5.3225 -0.9212 37 1 2.7042 4.3460 -6.2041 38 1 3.3928 3.3363 -4.9097 39 1 1.6314 3.3805 -5.1626 40 1 0.2130 7.7889 -7.0721 41 1 1.0443 1.5128 -2.8352 42 1 2.7719 1.5087 -3.2638 43 1 2.0638 0.1173 -2.4091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062797033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:15 Heat of formation + Delta-G solvation = -9.932399 kcal Electronic energy + Delta-G solvation = -22538.453739 eV Core-core repulsion = 19390.811880 eV Total energy + Delta-G solvation = -3147.641859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86679 -39.45164 -38.48763 -35.31866 -34.33950 -33.58000 -32.03600 -29.94656 -28.86346 -27.71258 -27.18568 -26.29037 -24.92902 -23.22823 -21.99141 -21.15452 -18.97585 -18.63972 -18.33479 -17.24546 -16.76692 -16.20924 -15.90953 -15.65840 -15.34615 -15.27494 -14.87967 -14.66793 -14.51756 -14.38404 -14.00085 -13.70285 -13.48394 -13.44326 -13.26022 -13.12978 -12.86536 -12.71703 -12.66555 -12.53477 -12.29405 -12.08960 -11.99025 -11.43584 -11.05611 -10.97182 -10.72017 -10.48310 -10.13332 -9.67441 -9.06139 -8.26939 -6.30316 0.03918 0.11994 1.31248 1.37126 1.46627 2.32982 2.37070 2.81634 3.07071 3.22242 3.50671 3.73808 3.74459 3.95970 4.19990 4.26683 4.35706 4.41115 4.44032 4.45221 4.58006 4.58958 4.63786 4.64095 4.71655 4.74226 4.79545 4.80555 4.86172 4.89539 5.03901 5.09352 5.17235 5.19834 5.25653 5.28697 5.43426 5.59978 5.64751 5.99628 6.27671 6.36738 6.64936 6.75635 7.03708 7.34236 8.89322 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.004568 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.957063 B = 6128.457099 C = 6425.467392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.337 6.337 3 C 0.122 3.878 4 C -0.157 4.157 5 C -0.099 4.099 6 C 0.096 3.904 7 N -0.501 5.501 8 C 0.132 3.868 9 C 0.095 3.905 10 N -0.524 5.524 11 C 0.053 3.947 12 C 0.184 3.816 13 H -0.011 1.011 14 C -0.143 4.143 15 C -0.506 4.506 16 H 0.042 0.958 17 C 0.015 3.985 18 N -0.948 5.948 19 Si 0.947 3.053 20 H -0.261 1.261 21 H -0.300 1.300 22 H -0.253 1.253 23 C -0.139 4.139 24 C -0.102 4.102 25 H 0.123 0.877 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.012 0.988 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.765 -16.516 14.790 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.254 6.254 3 C 0.071 3.929 4 C -0.160 4.160 5 C -0.156 4.156 6 C -0.061 4.061 7 N -0.210 5.210 8 C -0.005 4.005 9 C -0.032 4.032 10 N -0.248 5.248 11 C -0.096 4.096 12 C 0.077 3.923 13 H 0.007 0.993 14 C -0.200 4.200 15 C -0.544 4.544 16 H 0.060 0.940 17 C -0.183 4.183 18 N -0.588 5.588 19 Si 0.774 3.226 20 H -0.186 1.186 21 H -0.228 1.228 22 H -0.177 1.177 23 C -0.142 4.142 24 C -0.159 4.159 25 H 0.141 0.859 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.200 0.800 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.761 -16.060 14.636 22.244 hybrid contribution 0.329 0.459 -0.826 1.001 sum 5.089 -15.601 13.809 21.447 Atomic orbital electron populations 1.23230 0.76810 1.05114 1.01197 1.85900 1.21558 1.23653 1.94267 1.18799 0.96320 0.86329 0.91490 1.21535 1.01358 0.96089 0.97013 1.20663 1.02623 1.01016 0.91270 1.22988 0.94775 0.92110 0.96251 1.67491 1.18963 1.35914 0.98665 1.20812 0.95126 0.91302 0.93291 1.21109 0.92399 0.96810 0.92921 1.61900 1.39916 1.20595 1.02431 1.22058 0.99518 0.92907 0.95107 1.19562 0.94223 0.92499 0.86056 0.99319 1.22136 1.01666 0.98513 0.97676 1.21174 1.05310 1.27557 1.00346 0.94013 1.25734 0.98151 0.94529 0.99838 1.70025 1.32754 1.33942 1.22118 0.85885 0.80756 0.76855 0.79085 1.18636 1.22802 1.17685 1.21155 1.00414 0.95346 0.97322 1.20666 1.02476 1.00475 0.92268 0.85900 0.92584 0.93888 0.89832 0.91095 0.89375 0.79971 0.94490 0.87622 0.96921 0.93026 0.92052 0.94533 0.91596 0.92006 0.92538 0.91198 0.90635 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 113.37 1.23 1.73 16 2 O -0.34 -7.59 8.90 -90.67 -0.81 -8.40 16 3 C 0.12 3.17 5.73 22.76 0.13 3.30 16 4 C -0.16 -3.57 5.91 -19.68 -0.12 -3.68 16 5 C -0.10 -1.45 9.84 71.24 0.70 -0.75 16 6 C 0.10 2.38 10.85 84.60 0.92 3.30 16 7 N -0.50 -15.90 9.21 -184.12 -1.70 -17.59 16 8 C 0.13 4.31 5.54 42.48 0.24 4.55 16 9 C 0.10 3.37 4.66 85.56 0.40 3.77 16 10 N -0.52 -22.15 4.61 -906.02 -4.18 -26.33 16 11 C 0.05 2.25 9.01 127.69 1.15 3.40 16 12 C 0.18 8.68 1.65 44.17 0.07 8.75 16 13 H -0.01 -0.52 7.20 -2.39 -0.02 -0.54 16 14 C -0.14 -5.82 8.47 71.98 0.61 -5.21 16 15 C -0.51 -28.85 8.46 25.60 0.22 -28.63 16 16 H 0.04 2.67 6.65 -2.91 -0.02 2.65 16 17 C 0.01 0.85 5.45 84.65 0.46 1.31 16 18 N -0.95 -59.21 13.96 21.44 0.30 -58.91 16 19 Si 0.95 44.68 24.37 68.60 1.67 46.35 16 20 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.25 -11.18 6.53 99.48 0.65 -10.53 16 23 C -0.14 -4.09 5.91 -19.68 -0.12 -4.20 16 24 C -0.10 -2.68 9.42 71.24 0.67 -2.01 16 25 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.06 0.83 7.34 -2.38 -0.02 0.81 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 0.99 6.53 -2.39 -0.02 0.98 16 30 H 0.09 0.97 8.09 -2.38 -0.02 0.95 16 31 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 32 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 33 H 0.11 3.36 3.62 -2.39 -0.01 3.35 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 2.48 6.10 -2.39 -0.01 2.47 16 36 H 0.06 2.44 6.56 -2.39 -0.02 2.43 16 37 H 0.04 1.53 3.27 -2.39 -0.01 1.52 16 38 H 0.07 2.19 6.20 -2.39 -0.01 2.18 16 39 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.94 5.96 -2.39 -0.01 1.93 16 43 H 0.08 1.83 7.62 -2.39 -0.02 1.81 16 Total: -1.00 -68.91 331.76 2.77 -66.14 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.93 Total: 13.11 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 6.56 Total: -14.38 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -5.58 Total: -102.83 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.81 Total: -8.40 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.67 Total: 46.35 kcal Total: -68.91 2.77 -66.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062797033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.206 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds