Wall clock time and date at job start Tue Mar 31 2020 00:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.50697 * 109.47096 * 120.00401 * 2 1 3 5 5 C 1.34325 * 126.44507 * 119.99667 * 4 2 1 6 6 N 1.34476 * 107.67021 * 179.97438 * 5 4 2 7 7 C 1.30256 * 108.69989 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.61873 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47165 * 90.02412 * 8 7 6 10 10 C 1.46902 * 110.99992 * 189.99655 * 9 8 7 11 11 C 1.50698 * 109.46792 * 75.57022 * 10 9 8 12 12 H 1.08001 * 120.00202 * 355.62594 * 11 10 9 13 13 C 1.37877 * 120.00042 * 175.62356 * 11 10 9 14 14 N 1.31513 * 119.99897 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00193 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47258 * 90.00014 * 15 13 11 17 17 H 1.48503 * 109.46898 * 210.00273 * 15 13 11 18 18 H 1.48502 * 109.46845 * 329.99987 * 15 13 11 19 19 C 1.46900 * 110.99758 * 66.04851 * 9 8 7 20 20 C 1.52997 * 109.46739 * 195.66251 * 19 9 8 21 21 C 1.53003 * 117.49636 * 244.11463 * 20 19 9 22 22 C 1.53008 * 117.49574 * 175.45767 * 20 19 9 23 23 O 1.33966 * 108.75865 * 359.73388 * 7 6 5 24 24 H 1.09005 * 109.47091 * 59.99809 * 1 2 3 25 25 H 1.08992 * 109.47217 * 300.00144 * 1 2 3 26 26 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46949 * 240.00080 * 2 1 3 28 28 H 1.08996 * 109.47008 * 60.00333 * 3 2 1 29 29 H 1.09000 * 109.46708 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47354 * 300.00025 * 3 2 1 31 31 H 1.07999 * 126.16724 * 0.02562 * 5 4 2 32 32 H 1.09003 * 109.47096 * 210.02560 * 8 7 6 33 33 H 1.09001 * 109.47186 * 330.02431 * 8 7 6 34 34 H 1.08995 * 109.47210 * 195.57231 * 10 9 8 35 35 H 1.08998 * 109.47136 * 315.57317 * 10 9 8 36 36 H 0.97001 * 119.99886 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47144 * 315.65771 * 19 9 8 38 38 H 1.08998 * 109.47374 * 75.65811 * 19 9 8 39 39 H 1.08995 * 115.55439 * 29.78247 * 20 19 9 40 40 H 1.09000 * 117.49982 * 0.02562 * 21 20 19 41 41 H 1.09002 * 117.49619 * 145.02248 * 21 20 19 42 42 H 1.09000 * 117.49348 * 214.97798 * 22 20 19 43 43 H 1.08998 * 117.49932 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8077 -1.8070 1.2580 6 7 3.0285 -2.1184 2.5474 7 6 2.4138 -1.2494 3.2981 8 6 2.4073 -1.2403 4.8051 9 7 3.5355 -0.4371 5.2948 10 6 3.7044 -0.5960 6.7454 11 6 4.3354 -1.9338 7.0340 12 1 4.5211 -2.6284 6.2282 13 6 4.6758 -2.2709 8.3269 14 7 4.4493 -1.4252 9.3083 15 14 5.4586 -3.9289 8.6846 16 1 6.9358 -3.8094 8.5909 17 1 5.0833 -4.3686 10.0525 18 1 4.9789 -4.9266 7.6948 19 6 3.3694 0.9777 4.9361 20 6 4.7044 1.7063 5.1034 21 6 4.7799 2.8081 6.1623 22 6 4.7664 3.1741 4.6760 23 8 1.7927 -0.3620 2.5098 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.1862 -2.3417 0.3994 32 1 1.4721 -0.8086 5.1618 33 1 2.5005 -2.2614 5.1750 34 1 4.3467 0.1983 7.1256 35 1 2.7311 -0.5407 7.2328 36 1 4.6884 -1.6626 10.2179 37 1 3.0416 1.0536 3.8993 38 1 2.6231 1.4325 5.5874 39 1 5.5950 1.0980 4.9456 40 1 3.8788 3.0136 6.7400 41 1 5.7204 2.9249 6.7008 42 1 5.6981 3.5315 4.2373 43 1 3.8564 3.6205 4.2752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081044064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:37 Heat of formation + Delta-G solvation = 39.644192 kcal Electronic energy + Delta-G solvation = -22049.810285 eV Core-core repulsion = 18904.318228 eV Total energy + Delta-G solvation = -3145.492057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.04046 -37.85429 -35.95951 -35.36316 -34.35265 -32.54765 -29.96592 -27.67169 -27.39070 -26.86076 -24.17106 -22.55759 -22.08355 -21.80627 -20.98844 -20.09134 -19.60168 -16.69197 -16.61034 -16.19350 -15.51347 -15.37023 -14.70839 -14.62744 -14.24393 -13.82890 -13.78862 -13.27843 -13.21937 -12.87891 -12.42272 -12.25030 -12.02258 -11.86812 -11.46039 -11.45803 -11.26869 -11.18760 -11.17809 -10.98379 -10.79390 -10.66826 -10.61885 -10.07276 -9.99119 -9.87074 -9.41304 -9.21338 -8.44215 -8.37602 -7.40877 -6.00246 -4.01307 1.71546 2.90019 3.04100 3.36311 3.42125 3.47462 4.20145 4.35805 4.46525 4.56611 4.75505 4.80192 4.87075 5.16445 5.25471 5.30036 5.33454 5.35836 5.38987 5.52080 5.58488 5.60402 5.66619 5.81093 5.89083 5.91765 5.93203 5.99626 6.04110 6.07608 6.18431 6.27626 6.29578 6.35200 6.46802 6.62153 6.76791 7.15249 7.27738 7.81487 8.01547 8.11586 8.15474 8.49192 9.07145 9.63146 11.10127 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.004999 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.001642 B = 5599.706457 C = 6842.380673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.004 4.004 3 C -0.149 4.149 4 C -0.058 4.058 5 C -0.041 4.041 6 N -0.470 5.470 7 C 0.217 3.783 8 C 0.155 3.845 9 N -0.525 5.525 10 C 0.195 3.805 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.272 1.272 19 C 0.082 3.918 20 C -0.128 4.128 21 C -0.176 4.176 22 C -0.189 4.189 23 O -0.202 6.202 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.176 0.824 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.046 0.954 35 H -0.008 1.008 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 6.730 -16.460 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 C -0.206 4.206 4 C -0.111 4.111 5 C -0.180 4.180 6 N -0.198 5.198 7 C 0.009 3.991 8 C 0.026 3.974 9 N -0.251 5.251 10 C 0.071 3.929 11 C -0.546 4.546 12 H 0.084 0.916 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.197 1.197 19 C -0.046 4.046 20 C -0.147 4.147 21 C -0.213 4.213 22 C -0.227 4.227 23 O -0.090 6.090 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.193 0.807 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.064 0.936 35 H 0.010 0.990 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.579 6.101 -16.209 18.195 hybrid contribution -0.517 -0.044 0.385 0.646 sum -6.095 6.058 -15.823 18.006 Atomic orbital electron populations 1.21873 0.93826 1.02418 1.02458 1.19646 0.96209 0.95867 0.90556 1.21869 1.01676 0.94628 1.02423 1.23248 1.04348 0.99466 0.84086 1.23065 1.01922 0.97615 0.95396 1.70502 1.20889 1.26960 1.01498 1.26649 0.91661 0.84699 0.96059 1.20495 0.94069 1.02965 0.79866 1.62103 1.38211 1.05291 1.19523 1.19826 0.95968 0.98674 0.78465 1.21205 1.39687 1.00868 0.92859 0.91566 1.24954 0.95963 0.97308 0.96175 1.69956 1.48292 1.35601 1.00008 0.86518 0.79639 0.84077 0.77335 1.20691 1.21426 1.19710 1.21677 0.94197 0.89483 0.99232 1.22199 1.00056 0.89600 1.02826 1.22980 1.03030 1.04053 0.91245 1.22941 1.02266 0.99115 0.98348 1.84383 1.59850 1.48566 1.16166 0.91768 0.92100 0.92254 0.88327 0.92075 0.92101 0.91791 0.80688 0.93218 0.85707 0.93566 0.99007 0.92976 0.92017 0.95300 0.87014 0.89151 0.89047 0.89328 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.18 37.16 0.34 -0.94 16 2 C 0.00 -0.04 3.33 -91.77 -0.31 -0.34 16 3 C -0.15 -1.35 9.18 37.16 0.34 -1.01 16 4 C -0.06 -0.81 5.89 -35.69 -0.21 -1.02 16 5 C -0.04 -0.63 11.78 -17.77 -0.21 -0.84 16 6 N -0.47 -8.96 11.29 -11.10 -0.13 -9.09 16 7 C 0.22 4.02 6.96 -12.95 -0.09 3.93 16 8 C 0.15 3.04 5.42 -4.98 -0.03 3.01 16 9 N -0.53 -11.31 4.37 -237.52 -1.04 -12.35 16 10 C 0.19 4.92 4.59 -4.98 -0.02 4.89 16 11 C -0.51 -14.08 8.60 -34.44 -0.30 -14.37 16 12 H 0.07 1.86 7.66 -52.49 -0.40 1.46 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 15 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 C 0.08 1.54 5.11 -3.83 -0.02 1.52 16 20 C -0.13 -2.27 4.96 -90.62 -0.45 -2.72 16 21 C -0.18 -2.85 9.98 -26.69 -0.27 -3.11 16 22 C -0.19 -2.71 10.26 -26.69 -0.27 -2.98 16 23 O -0.20 -3.34 9.76 5.38 0.05 -3.29 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.13 2.61 7.32 -51.93 -0.38 2.23 16 34 H 0.05 1.24 6.94 -51.93 -0.36 0.88 16 35 H -0.01 -0.21 8.00 -51.93 -0.42 -0.62 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.06 1.11 6.14 -51.93 -0.32 0.79 16 38 H 0.03 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.11 2.18 8.14 -51.93 -0.42 1.76 16 40 H 0.09 1.45 8.03 -51.93 -0.42 1.04 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -30.63 356.16 -8.94 -39.57 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.33 Total: 1.09 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.59 Total: -12.48 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.43 Total: -47.00 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: 0.05 Total: -3.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.63 -8.94 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.215 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds