Wall clock time and date at job start Tue Mar 31 2020 00:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.50697 * 109.47096 * 120.00401 * 2 1 3 5 5 C 1.34325 * 126.44507 * 119.99667 * 4 2 1 6 6 N 1.34476 * 107.67021 * 179.97438 * 5 4 2 7 7 C 1.30256 * 108.69989 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.61873 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47165 * 90.02412 * 8 7 6 10 10 C 1.46902 * 110.99992 * 189.99655 * 9 8 7 11 11 C 1.50698 * 109.46792 * 75.57022 * 10 9 8 12 12 H 1.08001 * 120.00202 * 355.62594 * 11 10 9 13 13 C 1.37877 * 120.00042 * 175.62356 * 11 10 9 14 14 N 1.31513 * 119.99897 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00193 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47258 * 90.00014 * 15 13 11 17 17 H 1.48503 * 109.46898 * 210.00273 * 15 13 11 18 18 H 1.48502 * 109.46845 * 329.99987 * 15 13 11 19 19 C 1.46900 * 110.99758 * 66.04851 * 9 8 7 20 20 C 1.52997 * 109.46739 * 195.66251 * 19 9 8 21 21 C 1.53003 * 117.49636 * 244.11463 * 20 19 9 22 22 C 1.53008 * 117.49574 * 175.45767 * 20 19 9 23 23 O 1.33966 * 108.75865 * 359.73388 * 7 6 5 24 24 H 1.09005 * 109.47091 * 59.99809 * 1 2 3 25 25 H 1.08992 * 109.47217 * 300.00144 * 1 2 3 26 26 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46949 * 240.00080 * 2 1 3 28 28 H 1.08996 * 109.47008 * 60.00333 * 3 2 1 29 29 H 1.09000 * 109.46708 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47354 * 300.00025 * 3 2 1 31 31 H 1.07999 * 126.16724 * 0.02562 * 5 4 2 32 32 H 1.09003 * 109.47096 * 210.02560 * 8 7 6 33 33 H 1.09001 * 109.47186 * 330.02431 * 8 7 6 34 34 H 1.08995 * 109.47210 * 195.57231 * 10 9 8 35 35 H 1.08998 * 109.47136 * 315.57317 * 10 9 8 36 36 H 0.97001 * 119.99886 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47144 * 315.65771 * 19 9 8 38 38 H 1.08998 * 109.47374 * 75.65811 * 19 9 8 39 39 H 1.08995 * 115.55439 * 29.78247 * 20 19 9 40 40 H 1.09000 * 117.49982 * 0.02562 * 21 20 19 41 41 H 1.09002 * 117.49619 * 145.02248 * 21 20 19 42 42 H 1.09000 * 117.49348 * 214.97798 * 22 20 19 43 43 H 1.08998 * 117.49932 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8077 -1.8070 1.2580 6 7 3.0285 -2.1184 2.5474 7 6 2.4138 -1.2494 3.2981 8 6 2.4073 -1.2403 4.8051 9 7 3.5355 -0.4371 5.2948 10 6 3.7044 -0.5960 6.7454 11 6 4.3354 -1.9338 7.0340 12 1 4.5211 -2.6284 6.2282 13 6 4.6758 -2.2709 8.3269 14 7 4.4493 -1.4252 9.3083 15 14 5.4586 -3.9289 8.6846 16 1 6.9358 -3.8094 8.5909 17 1 5.0833 -4.3686 10.0525 18 1 4.9789 -4.9266 7.6948 19 6 3.3694 0.9777 4.9361 20 6 4.7044 1.7063 5.1034 21 6 4.7799 2.8081 6.1623 22 6 4.7664 3.1741 4.6760 23 8 1.7927 -0.3620 2.5098 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.1862 -2.3417 0.3994 32 1 1.4721 -0.8086 5.1618 33 1 2.5005 -2.2614 5.1750 34 1 4.3467 0.1983 7.1256 35 1 2.7311 -0.5407 7.2328 36 1 4.6884 -1.6626 10.2179 37 1 3.0416 1.0536 3.8993 38 1 2.6231 1.4325 5.5874 39 1 5.5950 1.0980 4.9456 40 1 3.8788 3.0136 6.7400 41 1 5.7204 2.9249 6.7008 42 1 5.6981 3.5315 4.2373 43 1 3.8564 3.6205 4.2752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081044064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:36 Heat of formation + Delta-G solvation = 19.945529 kcal Electronic energy + Delta-G solvation = -22050.664483 eV Core-core repulsion = 18904.318228 eV Total energy + Delta-G solvation = -3146.346255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.32005 -39.38006 -37.18369 -36.49557 -35.67147 -34.65476 -31.36351 -29.55849 -28.24513 -28.06917 -25.96752 -23.74071 -23.50453 -23.17874 -22.41376 -21.20956 -21.12159 -18.56423 -17.95129 -17.73457 -16.99651 -16.50020 -16.34927 -15.89951 -15.55049 -15.36429 -15.20822 -14.46273 -14.26024 -14.10641 -13.99230 -13.64498 -13.36017 -13.22147 -13.06949 -12.64010 -12.57704 -12.51985 -12.38957 -12.34049 -12.25987 -12.16835 -11.96850 -11.90458 -11.42984 -11.35317 -11.14215 -10.77583 -10.56030 -9.64336 -9.15468 -8.17244 -6.25888 0.46102 1.42440 1.43201 1.54769 1.64648 1.74961 2.42684 2.88274 3.07037 3.15753 3.27302 3.64730 3.88375 3.94876 4.00116 4.06473 4.14194 4.14543 4.32682 4.40312 4.44718 4.56213 4.56988 4.74183 4.75681 4.76792 4.76883 4.88778 4.92284 5.00464 5.01796 5.14397 5.17900 5.22475 5.25635 5.31800 5.34393 5.37357 5.38161 5.68797 6.06145 6.21296 6.51928 6.85324 6.87971 7.42867 8.92894 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.004999 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.001642 B = 5599.706457 C = 6842.380673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.004 4.004 3 C -0.147 4.147 4 C -0.040 4.040 5 C -0.062 4.062 6 N -0.499 5.499 7 C 0.195 3.805 8 C 0.160 3.840 9 N -0.536 5.536 10 C 0.214 3.786 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.010 3.990 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.091 3.909 20 C -0.158 4.158 21 C -0.183 4.183 22 C -0.151 4.151 23 O -0.206 6.206 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.129 0.871 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.207 0.793 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.025 0.975 35 H -0.029 1.029 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 7.368 -18.935 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 C -0.204 4.204 4 C -0.093 4.093 5 C -0.200 4.200 6 N -0.229 5.229 7 C -0.012 4.012 8 C 0.031 3.969 9 N -0.262 5.262 10 C 0.089 3.911 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.189 4.189 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.037 4.037 20 C -0.177 4.177 21 C -0.220 4.220 22 C -0.188 4.188 23 O -0.093 6.093 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.223 0.777 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.043 0.957 35 H -0.011 1.011 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.826 6.754 -18.701 20.719 hybrid contribution -0.481 -0.202 1.026 1.150 sum -6.307 6.552 -17.675 19.878 Atomic orbital electron populations 1.21870 0.92831 1.02520 1.03121 1.19994 0.96973 0.96162 0.89164 1.21870 1.01258 0.94154 1.03129 1.24204 1.02298 0.98704 0.84119 1.23604 1.02858 0.98700 0.94821 1.70436 1.21271 1.27633 1.03524 1.26066 0.93609 0.86010 0.95509 1.20249 0.93840 1.01526 0.81260 1.61980 1.39750 1.07441 1.16993 1.19405 0.94040 0.96933 0.80733 1.21440 1.39952 1.01755 0.92897 0.92549 1.25748 0.96355 1.00843 0.95934 1.70059 1.49137 1.37385 1.00402 0.85507 0.78710 0.79763 0.77393 1.20175 1.20532 1.19297 1.21644 0.94887 0.87757 0.99436 1.22104 0.98492 0.91176 1.05899 1.23015 1.03005 1.03527 0.92499 1.23035 1.04109 0.95349 0.96334 1.84372 1.59546 1.48130 1.17271 0.88960 0.93618 0.92471 0.85319 0.93599 0.92752 0.88902 0.77658 0.92083 0.87822 0.95675 1.01112 0.92709 0.91169 0.95359 0.89443 0.89353 0.89052 0.87299 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.18 71.98 0.66 -1.43 16 2 C 0.00 -0.07 3.33 -11.54 -0.04 -0.11 16 3 C -0.15 -2.22 9.18 71.98 0.66 -1.56 16 4 C -0.04 -1.04 5.89 24.79 0.15 -0.90 16 5 C -0.06 -1.79 11.78 83.39 0.98 -0.81 16 6 N -0.50 -19.14 11.29 -303.83 -3.43 -22.57 16 7 C 0.19 7.35 6.96 88.34 0.61 7.97 16 8 C 0.16 6.55 5.42 85.56 0.46 7.01 16 9 N -0.54 -24.06 4.37 -905.38 -3.96 -28.02 16 10 C 0.21 11.34 4.59 85.56 0.39 11.74 16 11 C -0.52 -29.99 8.60 25.60 0.22 -29.77 16 12 H 0.06 3.29 7.66 -2.91 -0.02 3.26 16 13 C 0.01 0.55 5.46 84.65 0.46 1.01 16 14 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 15 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 C 0.09 3.45 5.11 86.30 0.44 3.89 16 20 C -0.16 -5.66 4.96 -10.79 -0.05 -5.72 16 21 C -0.18 -5.91 9.98 30.62 0.31 -5.60 16 22 C -0.15 -4.03 10.26 30.62 0.31 -3.72 16 23 O -0.21 -6.72 9.76 -3.67 -0.04 -6.76 16 24 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.13 1.37 8.11 -2.38 -0.02 1.36 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 33 H 0.10 4.61 7.32 -2.39 -0.02 4.59 16 34 H 0.03 1.42 6.94 -2.39 -0.02 1.41 16 35 H -0.03 -1.61 8.00 -2.39 -0.02 -1.63 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.07 2.52 6.14 -2.39 -0.01 2.50 16 38 H 0.03 1.07 7.79 -2.39 -0.02 1.05 16 39 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.09 2.86 8.03 -2.39 -0.02 2.84 16 41 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -68.01 356.16 1.42 -66.59 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.97 Total: 16.71 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.57 Total: -17.99 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -7.11 Total: -105.84 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.04 Total: -6.76 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.01 1.42 -66.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.538 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds