Wall clock time and date at job start Tue Mar 31 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47214 * 2 1 4 4 C 1.52997 * 109.47219 * 64.99544 * 3 2 1 5 5 C 1.53005 * 109.46989 * 179.38167 * 4 3 2 6 6 C 1.53005 * 109.47195 * 185.00012 * 3 2 1 7 7 N 1.46494 * 109.47232 * 53.74877 * 6 3 2 8 8 C 1.46503 * 120.00222 * 263.50610 * 7 6 3 9 9 C 1.50699 * 109.46825 * 270.00059 * 8 7 6 10 10 H 1.07995 * 120.00306 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99954 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99997 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00046 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47298 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47324 * 120.00264 * 13 11 9 16 16 H 1.48507 * 109.47091 * 240.00175 * 13 11 9 17 17 C 1.34778 * 120.00051 * 83.50120 * 7 6 3 18 18 O 1.21700 * 120.00373 * 179.43088 * 17 7 6 19 19 C 1.46675 * 119.99731 * 359.43913 * 17 7 6 20 20 C 1.37872 * 126.23466 * 171.79494 * 19 17 7 21 21 C 1.39838 * 107.09010 * 179.72181 * 20 19 17 22 22 C 1.35456 * 107.85983 * 0.41105 * 21 20 19 23 23 N 1.35536 * 108.87036 * 359.57968 * 22 21 20 24 24 H 0.97001 * 125.67634 * 180.22635 * 23 22 21 25 25 H 1.09002 * 109.47253 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47246 * 300.00377 * 1 2 3 27 27 H 1.09000 * 109.46816 * 60.00670 * 1 2 3 28 28 H 1.08998 * 109.47246 * 239.99623 * 2 1 3 29 29 H 1.09000 * 109.47001 * 119.99851 * 2 1 3 30 30 H 1.09002 * 109.46952 * 304.99459 * 3 2 1 31 31 H 1.08995 * 109.47236 * 299.38262 * 4 3 2 32 32 H 1.09002 * 109.47111 * 59.38680 * 4 3 2 33 33 H 1.09004 * 109.46581 * 62.56835 * 5 4 3 34 34 H 1.09002 * 109.46903 * 182.56114 * 5 4 3 35 35 H 1.08993 * 109.47207 * 302.56949 * 5 4 3 36 36 H 1.09000 * 109.46478 * 293.75243 * 6 3 2 37 37 H 1.08996 * 109.47191 * 173.75017 * 6 3 2 38 38 H 1.08999 * 109.47334 * 29.99982 * 8 7 6 39 39 H 1.09001 * 109.47352 * 149.99953 * 8 7 6 40 40 H 0.96997 * 120.00375 * 179.97438 * 12 11 9 41 41 H 1.08010 * 126.45520 * 359.97269 * 20 19 17 42 42 H 1.07995 * 126.06892 * 180.26066 * 21 20 19 43 43 H 1.07998 * 125.56433 * 179.84530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.1585 3.5643 1.3138 6 6 3.5649 1.4443 -0.1257 7 7 3.9590 0.6609 -1.2991 8 6 4.3542 -0.7414 -1.1448 9 6 5.8400 -0.8211 -0.9059 10 1 6.4309 0.0823 -0.8729 11 6 6.4451 -2.0474 -0.7296 12 7 5.7257 -3.1476 -0.7703 13 14 8.2867 -2.1462 -0.4328 14 1 8.8623 -0.7773 -0.4332 15 1 8.5427 -2.7911 0.8801 16 1 8.9194 -2.9489 -1.5103 17 6 3.9581 1.2301 -2.5208 18 8 4.2955 0.5823 -3.4943 19 6 3.5505 2.6304 -2.6771 20 6 3.6501 3.3847 -3.8268 21 6 3.1426 4.6537 -3.5310 22 6 2.7591 4.6553 -2.2319 23 7 2.9983 3.4307 -1.7027 24 1 2.8120 3.1629 -0.7892 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9815 -0.8419 31 1 0.5485 2.1351 1.3915 32 1 2.0607 1.5812 2.1497 33 1 1.6979 4.1223 0.4985 34 1 1.9095 4.0373 2.2638 35 1 3.2406 3.5577 1.1837 36 1 4.0037 1.0036 0.7695 37 1 3.9190 2.4691 -0.2374 38 1 3.8260 -1.1765 -0.2964 39 1 4.1018 -1.2919 -2.0510 40 1 6.1513 -4.0104 -0.6466 41 1 4.0420 3.0560 -4.7781 42 1 3.0716 5.4857 -4.2160 43 1 2.3287 5.4941 -1.7050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104544309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:10 Heat of formation + Delta-G solvation = 19.941367 kcal Electronic energy + Delta-G solvation = -23094.873958 eV Core-core repulsion = 19948.527522 eV Total energy + Delta-G solvation = -3146.346436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39757 -38.70305 -37.43089 -34.28669 -32.63285 -32.09812 -30.67770 -29.27789 -28.26491 -26.79287 -24.50130 -23.50891 -22.61795 -21.20422 -20.67884 -19.93321 -19.07978 -17.37462 -16.54714 -15.69568 -15.34886 -14.91449 -14.71747 -14.26069 -14.17073 -14.09904 -13.68036 -13.54121 -13.10589 -12.84319 -12.59933 -12.31523 -12.21096 -12.07269 -11.97608 -11.69144 -11.53623 -11.29701 -11.13974 -10.97511 -10.72754 -10.63930 -10.41783 -10.27609 -10.13010 -9.60941 -9.14700 -8.72371 -8.45070 -8.02708 -7.67158 -6.06380 -4.10939 1.92678 3.01358 3.28802 3.36913 3.40505 3.43592 3.83882 4.03112 4.43873 4.62089 4.74726 4.81781 4.96361 5.12180 5.20174 5.27203 5.29172 5.30711 5.48524 5.53276 5.57816 5.58160 5.70011 5.72930 5.80218 5.90486 5.94309 6.09763 6.11401 6.25520 6.32278 6.38442 6.44096 6.59664 6.88952 7.07461 7.21901 7.38961 7.48108 7.63268 7.90249 8.20739 8.32390 8.87136 9.03315 9.54265 11.01577 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.006527 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.974715 B = 4288.523498 C = 5201.471354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.173 4.173 6 C 0.095 3.905 7 N -0.591 5.591 8 C 0.246 3.754 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.575 3.425 18 O -0.526 6.526 19 C -0.036 4.036 20 C -0.125 4.125 21 C -0.211 4.211 22 C -0.007 4.007 23 N -0.552 5.552 24 H 0.427 0.573 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 14.129 4.574 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.149 4.149 4 C -0.161 4.161 5 C -0.231 4.231 6 C -0.030 4.030 7 N -0.322 5.322 8 C 0.128 3.872 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.208 1.208 17 C 0.362 3.638 18 O -0.403 6.403 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.235 4.235 22 C -0.143 4.143 23 N -0.161 5.161 24 H 0.278 0.722 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.155 0.845 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.270 13.433 4.274 17.441 hybrid contribution 0.954 -0.065 0.622 1.140 sum -9.316 13.368 4.896 17.014 Atomic orbital electron populations 1.21818 0.96296 1.01558 1.01127 1.21562 0.95132 0.94976 1.03802 1.22050 0.96324 0.98500 0.97984 1.21677 1.01568 0.95194 0.97666 1.22067 1.01433 0.97176 1.02378 1.21951 0.93443 0.95895 0.91758 1.48136 1.64739 1.14749 1.04581 1.19401 0.95258 0.74192 0.98397 1.21491 0.93105 0.92865 1.49211 0.92392 1.24919 0.98425 0.95460 0.95190 1.69935 1.35663 0.97760 1.49925 0.86453 0.85205 0.78144 0.77701 1.19802 1.20983 1.20802 1.17090 0.78674 0.84133 0.83900 1.90809 1.48566 1.62580 1.38310 1.20948 1.10161 0.93425 0.90496 1.21282 1.03329 0.93180 0.97356 1.20813 1.08617 0.98421 0.95693 1.21968 1.07332 0.89181 0.95811 1.43961 1.48057 1.10538 1.13526 0.72161 0.92693 0.92944 0.93203 0.90375 0.91348 0.90993 0.91031 0.90821 0.92947 0.91515 0.92205 0.88596 0.91620 0.94374 0.93680 0.92749 0.83864 0.84520 0.81982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.12 -1.72 4.34 -26.73 -0.12 -1.84 16 3 C -0.13 -1.71 1.58 -90.62 -0.14 -1.86 16 4 C -0.12 -1.23 5.21 -26.73 -0.14 -1.37 16 5 C -0.17 -1.49 8.59 37.16 0.32 -1.17 16 6 C 0.09 1.55 3.98 -4.04 -0.02 1.53 16 7 N -0.59 -12.66 1.86 -176.61 -0.33 -12.99 16 8 C 0.25 6.33 3.93 -5.19 -0.02 6.31 16 9 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 17 C 0.57 12.97 7.59 -12.85 -0.10 12.87 16 18 O -0.53 -14.01 16.48 5.19 0.09 -13.93 16 19 C -0.04 -0.67 6.53 -81.98 -0.54 -1.21 16 20 C -0.13 -2.13 10.66 -39.12 -0.42 -2.54 16 21 C -0.21 -2.85 10.81 -39.98 -0.43 -3.28 16 22 C -0.01 -0.09 11.89 -16.91 -0.20 -0.29 16 23 N -0.55 -7.95 4.09 -9.39 -0.04 -7.99 16 24 H 0.43 5.45 0.93 -40.82 -0.04 5.42 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.53 6.58 -51.93 -0.34 0.19 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.41 6.14 -51.93 -0.32 1.09 16 29 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.07 1.00 6.14 -51.93 -0.32 0.68 16 31 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.42 7.48 -51.93 -0.39 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 36 H 0.10 1.59 8.02 -51.93 -0.42 1.17 16 37 H 0.07 0.99 4.07 -51.93 -0.21 0.78 16 38 H 0.04 0.97 6.91 -51.93 -0.36 0.61 16 39 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 2.40 8.06 -52.48 -0.42 1.98 16 42 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -32.84 333.79 -7.77 -40.61 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.37 Total: 5.86 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.86 Total: -7.92 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.37 Total: -46.55 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.84 -7.77 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104544309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.547 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds