Wall clock time and date at job start Tue Mar 31 2020 00:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47214 * 2 1 4 4 C 1.52997 * 109.47219 * 64.99544 * 3 2 1 5 5 C 1.53005 * 109.46989 * 179.38167 * 4 3 2 6 6 C 1.53005 * 109.47195 * 185.00012 * 3 2 1 7 7 N 1.46494 * 109.47232 * 53.74877 * 6 3 2 8 8 C 1.46503 * 120.00222 * 263.50610 * 7 6 3 9 9 C 1.50699 * 109.46825 * 270.00059 * 8 7 6 10 10 H 1.07995 * 120.00306 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99954 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99997 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00046 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47298 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47324 * 120.00264 * 13 11 9 16 16 H 1.48507 * 109.47091 * 240.00175 * 13 11 9 17 17 C 1.34778 * 120.00051 * 83.50120 * 7 6 3 18 18 O 1.21700 * 120.00373 * 179.43088 * 17 7 6 19 19 C 1.46675 * 119.99731 * 359.43913 * 17 7 6 20 20 C 1.37872 * 126.23466 * 171.79494 * 19 17 7 21 21 C 1.39838 * 107.09010 * 179.72181 * 20 19 17 22 22 C 1.35456 * 107.85983 * 0.41105 * 21 20 19 23 23 N 1.35536 * 108.87036 * 359.57968 * 22 21 20 24 24 H 0.97001 * 125.67634 * 180.22635 * 23 22 21 25 25 H 1.09002 * 109.47253 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47246 * 300.00377 * 1 2 3 27 27 H 1.09000 * 109.46816 * 60.00670 * 1 2 3 28 28 H 1.08998 * 109.47246 * 239.99623 * 2 1 3 29 29 H 1.09000 * 109.47001 * 119.99851 * 2 1 3 30 30 H 1.09002 * 109.46952 * 304.99459 * 3 2 1 31 31 H 1.08995 * 109.47236 * 299.38262 * 4 3 2 32 32 H 1.09002 * 109.47111 * 59.38680 * 4 3 2 33 33 H 1.09004 * 109.46581 * 62.56835 * 5 4 3 34 34 H 1.09002 * 109.46903 * 182.56114 * 5 4 3 35 35 H 1.08993 * 109.47207 * 302.56949 * 5 4 3 36 36 H 1.09000 * 109.46478 * 293.75243 * 6 3 2 37 37 H 1.08996 * 109.47191 * 173.75017 * 6 3 2 38 38 H 1.08999 * 109.47334 * 29.99982 * 8 7 6 39 39 H 1.09001 * 109.47352 * 149.99953 * 8 7 6 40 40 H 0.96997 * 120.00375 * 179.97438 * 12 11 9 41 41 H 1.08010 * 126.45520 * 359.97269 * 20 19 17 42 42 H 1.07995 * 126.06892 * 180.26066 * 21 20 19 43 43 H 1.07998 * 125.56433 * 179.84530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.1585 3.5643 1.3138 6 6 3.5649 1.4443 -0.1257 7 7 3.9590 0.6609 -1.2991 8 6 4.3542 -0.7414 -1.1448 9 6 5.8400 -0.8211 -0.9059 10 1 6.4309 0.0823 -0.8729 11 6 6.4451 -2.0474 -0.7296 12 7 5.7257 -3.1476 -0.7703 13 14 8.2867 -2.1462 -0.4328 14 1 8.8623 -0.7773 -0.4332 15 1 8.5427 -2.7911 0.8801 16 1 8.9194 -2.9489 -1.5103 17 6 3.9581 1.2301 -2.5208 18 8 4.2955 0.5823 -3.4943 19 6 3.5505 2.6304 -2.6771 20 6 3.6501 3.3847 -3.8268 21 6 3.1426 4.6537 -3.5310 22 6 2.7591 4.6553 -2.2319 23 7 2.9983 3.4307 -1.7027 24 1 2.8120 3.1629 -0.7892 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9815 -0.8419 31 1 0.5485 2.1351 1.3915 32 1 2.0607 1.5812 2.1497 33 1 1.6979 4.1223 0.4985 34 1 1.9095 4.0373 2.2638 35 1 3.2406 3.5577 1.1837 36 1 4.0037 1.0036 0.7695 37 1 3.9190 2.4691 -0.2374 38 1 3.8260 -1.1765 -0.2964 39 1 4.1018 -1.2919 -2.0510 40 1 6.1513 -4.0104 -0.6466 41 1 4.0420 3.0560 -4.7781 42 1 3.0716 5.4857 -4.2160 43 1 2.3287 5.4941 -1.7050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104544309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:09 Heat of formation + Delta-G solvation = 0.589386 kcal Electronic energy + Delta-G solvation = -23095.713123 eV Core-core repulsion = 19948.527522 eV Total energy + Delta-G solvation = -3147.185600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.67417 -40.18620 -38.84720 -36.00977 -34.63705 -33.15050 -31.83702 -30.82513 -29.58252 -28.47094 -25.67547 -25.40277 -23.60600 -22.50986 -22.18283 -21.08606 -20.27762 -18.85841 -18.69524 -17.30765 -16.95522 -16.47157 -16.00839 -15.84849 -15.36095 -15.19320 -14.88045 -14.61913 -14.57637 -14.24633 -14.09227 -13.80967 -13.58330 -13.29211 -13.17231 -12.97257 -12.92576 -12.76224 -12.70527 -12.43535 -12.24521 -12.21378 -11.82448 -11.59138 -11.51073 -11.35163 -10.95984 -10.67543 -9.92224 -9.61262 -9.11696 -8.26242 -6.41461 0.54640 1.32750 1.35964 1.47559 1.88118 2.08721 2.30450 2.41775 2.47418 3.02860 3.45028 3.62660 3.70494 3.88204 4.12085 4.25260 4.30134 4.31787 4.43368 4.48218 4.52185 4.56145 4.59076 4.72731 4.80401 4.90611 4.97204 5.08995 5.13613 5.14629 5.17645 5.23659 5.27087 5.31483 5.37452 5.43486 5.49839 5.73018 5.83326 5.97830 6.01846 6.52989 6.62838 6.67300 7.19686 7.34723 8.80790 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.006527 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.974715 B = 4288.523498 C = 5201.471354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.117 4.117 4 C -0.117 4.117 5 C -0.175 4.175 6 C 0.090 3.910 7 N -0.593 5.593 8 C 0.268 3.732 9 C -0.549 4.549 10 H 0.049 0.951 11 C 0.011 3.989 12 N -0.925 5.925 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.265 1.265 16 H -0.280 1.280 17 C 0.564 3.436 18 O -0.590 6.590 19 C -0.081 4.081 20 C -0.131 4.131 21 C -0.217 4.217 22 C 0.029 3.971 23 N -0.544 5.544 24 H 0.433 0.567 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.035 0.965 39 H -0.005 1.005 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.170 0.830 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 17.724 6.608 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.155 4.155 5 C -0.232 4.232 6 C -0.034 4.034 7 N -0.322 5.322 8 C 0.147 3.853 9 C -0.587 4.587 10 H 0.067 0.933 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.190 1.190 16 H -0.206 1.206 17 C 0.355 3.645 18 O -0.472 6.472 19 C -0.194 4.194 20 C -0.159 4.159 21 C -0.240 4.240 22 C -0.107 4.107 23 N -0.154 5.154 24 H 0.286 0.714 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.013 0.987 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.188 0.812 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.254 17.053 6.362 21.399 hybrid contribution 1.188 -1.111 -0.040 1.627 sum -10.066 15.942 6.322 19.886 Atomic orbital electron populations 1.21766 0.93755 1.01988 1.02542 1.21523 0.97402 0.95634 1.01183 1.21962 0.93508 0.97868 1.00343 1.21672 1.02897 0.95930 0.95007 1.22101 1.00893 0.96071 1.04181 1.22268 0.95951 0.95840 0.89294 1.48057 1.64426 1.13503 1.06247 1.18814 0.94265 0.76656 0.95564 1.21741 0.94282 0.92903 1.49795 0.93300 1.25824 1.03443 0.94940 0.94594 1.70046 1.37765 0.98368 1.50242 0.85380 0.79001 0.78252 0.78252 1.19437 1.18992 1.20627 1.17757 0.77747 0.85850 0.83174 1.90743 1.51722 1.64571 1.40136 1.20287 1.14545 0.91928 0.92667 1.21515 1.02887 0.94933 0.96523 1.21190 1.08204 0.97559 0.97062 1.22902 1.03552 0.88849 0.95385 1.43902 1.47464 1.10829 1.13157 0.71433 0.92923 0.90015 0.93104 0.95056 0.92012 0.91023 0.88971 0.90708 0.91698 0.89308 0.93043 0.89176 0.89794 0.94662 0.98694 0.92269 0.85141 0.81241 0.76400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.67 71.98 0.70 -2.63 16 2 C -0.12 -3.63 4.34 30.59 0.13 -3.50 16 3 C -0.12 -3.03 1.58 -10.79 -0.02 -3.05 16 4 C -0.12 -1.97 5.21 30.60 0.16 -1.81 16 5 C -0.18 -2.26 8.59 71.98 0.62 -1.64 16 6 C 0.09 2.98 3.98 86.38 0.34 3.32 16 7 N -0.59 -27.17 1.86 -830.87 -1.54 -28.72 16 8 C 0.27 14.92 3.93 85.63 0.34 15.26 16 9 C -0.55 -32.76 9.39 25.60 0.24 -32.52 16 10 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 11 C 0.01 0.67 5.46 84.66 0.46 1.13 16 12 N -0.92 -56.58 13.29 21.45 0.28 -56.29 16 13 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 C 0.56 27.29 7.59 86.45 0.66 27.95 16 18 O -0.59 -34.43 16.48 -4.35 -0.07 -34.50 16 19 C -0.08 -3.05 6.53 40.35 0.26 -2.78 16 20 C -0.13 -4.43 10.66 22.57 0.24 -4.19 16 21 C -0.22 -5.08 10.81 22.01 0.24 -4.85 16 22 C 0.03 0.57 11.89 83.48 0.99 1.57 16 23 N -0.54 -14.34 4.09 -183.62 -0.75 -15.09 16 24 H 0.43 9.93 0.93 -92.71 -0.09 9.85 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.42 6.58 -2.39 -0.02 1.40 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.23 6.14 -2.39 -0.01 1.21 16 29 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 30 H 0.07 1.89 6.14 -2.39 -0.01 1.87 16 31 H 0.09 1.23 6.59 -2.39 -0.02 1.22 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 0.68 7.48 -2.38 -0.02 0.67 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.76 6.32 -2.39 -0.02 0.74 16 36 H 0.09 3.06 8.02 -2.39 -0.02 3.04 16 37 H 0.08 2.47 4.07 -2.39 -0.01 2.46 16 38 H 0.04 1.95 6.91 -2.39 -0.02 1.93 16 39 H -0.01 -0.33 7.43 -2.39 -0.02 -0.35 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -79.03 333.79 6.22 -72.81 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.92 Total: 21.60 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.36 Total: -7.74 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -2.01 Total: -100.11 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.07 Total: -34.50 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.03 6.22 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104544309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.397 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds