Wall clock time and date at job start Tue Mar 31 2020 00:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46855 * 2 1 4 4 N 1.30180 * 126.79904 * 269.97390 * 3 2 1 5 5 O 1.20928 * 111.60335 * 180.02562 * 4 3 2 6 6 C 1.34037 * 111.56462 * 359.76208 * 5 4 3 7 7 C 1.50703 * 126.77485 * 180.28093 * 6 5 4 8 8 C 1.35455 * 106.44697 * 0.38268 * 6 5 4 9 9 C 1.50699 * 128.00330 * 179.91404 * 8 6 5 10 10 N 1.46908 * 109.47006 * 269.67408 * 9 8 6 11 11 C 1.46894 * 111.00059 * 190.00374 * 10 9 8 12 12 C 1.50703 * 109.47255 * 72.17174 * 11 10 9 13 13 H 1.08002 * 120.00091 * 355.15773 * 12 11 10 14 14 C 1.37879 * 120.00036 * 175.15205 * 12 11 10 15 15 N 1.31519 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47163 * 120.00260 * 16 14 12 19 19 H 1.48501 * 109.46964 * 239.99697 * 16 14 12 20 20 C 1.46901 * 111.00060 * 66.04836 * 10 9 8 21 21 C 1.53001 * 109.46884 * 197.63295 * 20 10 9 22 22 C 1.52997 * 117.49420 * 244.25156 * 21 20 10 23 23 C 1.52996 * 117.49582 * 175.59280 * 21 20 10 24 24 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47276 * 300.00273 * 1 2 3 26 26 H 1.08998 * 109.47503 * 60.00513 * 1 2 3 27 27 H 1.08997 * 109.47223 * 240.00282 * 2 1 3 28 28 H 1.08998 * 109.47503 * 119.99487 * 2 1 3 29 29 H 1.08993 * 109.47372 * 270.11658 * 7 6 5 30 30 H 1.08997 * 109.46956 * 30.12277 * 7 6 5 31 31 H 1.09007 * 109.46751 * 150.11530 * 7 6 5 32 32 H 1.08998 * 109.47277 * 149.67778 * 9 8 6 33 33 H 1.08994 * 109.47533 * 29.67351 * 9 8 6 34 34 H 1.08997 * 109.47282 * 192.17267 * 11 10 9 35 35 H 1.09004 * 109.47054 * 312.17320 * 11 10 9 36 36 H 0.97000 * 120.00177 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47058 * 77.62796 * 20 10 9 38 38 H 1.09002 * 109.46736 * 317.62682 * 20 10 9 39 39 H 1.08994 * 115.55295 * 29.92056 * 21 20 10 40 40 H 1.09000 * 117.50166 * 359.97438 * 22 21 20 41 41 H 1.08993 * 117.50289 * 145.02116 * 22 21 20 42 42 H 1.08997 * 117.50209 * 214.97419 * 23 21 20 43 43 H 1.09005 * 117.50248 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1559 -1.0424 5 8 2.6819 3.2561 -0.7254 6 6 2.7264 3.3981 0.6067 7 6 3.1528 4.6259 1.3694 8 6 2.3147 2.2193 1.1319 9 6 2.1820 1.8475 2.5863 10 7 3.4443 1.2640 3.0597 11 6 3.2835 0.6744 4.3954 12 6 2.4738 -0.5924 4.2913 13 1 2.0485 -0.8850 3.3427 14 6 2.2761 -1.3779 5.4071 15 7 2.7936 -1.0214 6.5624 16 14 1.2730 -2.9485 5.2778 17 1 0.8056 -3.1236 3.8793 18 1 2.1161 -4.1076 5.6663 19 1 0.1006 -2.8631 6.1852 20 6 4.5218 2.2624 3.0511 21 6 5.8755 1.5524 3.1160 22 6 6.7409 1.7934 4.3545 23 6 7.1328 2.4181 3.0132 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 4.2259 4.5838 1.5552 30 1 2.9198 5.5158 0.7847 31 1 2.6207 4.6661 2.3199 32 1 1.3789 1.1200 2.7035 33 1 1.9525 2.7391 3.1698 34 1 4.2643 0.4454 4.8121 35 1 2.7689 1.3821 5.0454 36 1 2.6542 -1.5738 7.3475 37 1 4.4146 2.9200 3.9138 38 1 4.4640 2.8515 2.1358 39 1 5.9086 0.5612 2.6640 40 1 6.3460 2.4580 5.1229 41 1 7.3436 0.9608 4.7171 42 1 7.9933 1.9962 2.4939 43 1 6.9956 3.4934 2.8989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119343160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:36 Heat of formation + Delta-G solvation = 75.261962 kcal Electronic energy + Delta-G solvation = -22643.186772 eV Core-core repulsion = 19499.239218 eV Total energy + Delta-G solvation = -3143.947554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.58431 -38.00202 -36.06216 -34.78212 -33.42318 -32.27016 -30.99367 -28.47197 -27.62642 -26.48318 -24.32907 -23.81051 -22.03751 -21.56847 -20.61683 -19.57414 -19.49257 -17.37063 -16.72142 -16.33443 -15.42950 -14.75853 -14.63666 -14.48512 -14.15287 -13.90638 -13.50830 -13.37493 -13.12642 -12.79014 -12.55871 -12.30362 -12.06569 -11.92992 -11.44571 -11.31336 -11.21192 -11.13906 -11.04099 -10.78132 -10.68699 -10.67041 -10.42933 -10.03017 -9.88356 -9.52269 -9.37400 -9.19326 -8.80486 -8.44301 -7.31103 -6.04204 -4.05237 1.75563 2.57440 3.29002 3.37240 3.39359 3.40810 4.19857 4.40948 4.49316 4.73716 4.84743 5.15457 5.22114 5.26890 5.31327 5.33371 5.38904 5.42167 5.53777 5.55330 5.61219 5.70824 5.83388 5.88234 5.94785 5.99914 6.03330 6.12126 6.19335 6.23090 6.27136 6.31274 6.37850 6.45116 6.47960 6.63685 6.77085 7.23934 7.31935 7.79185 8.08232 8.16845 8.51080 8.60929 9.02194 9.58914 11.06396 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.007329 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.436339 B = 3819.320506 C = 5570.483727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.044 3.956 4 N -0.377 5.377 5 O 0.088 5.912 6 C -0.049 4.049 7 C -0.072 4.072 8 C -0.167 4.167 9 C 0.136 3.864 10 N -0.526 5.526 11 C 0.193 3.807 12 C -0.504 4.504 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.078 3.922 21 C -0.128 4.128 22 C -0.177 4.177 23 C -0.190 4.190 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.033 0.967 34 H 0.042 0.958 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 8.954 -8.744 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.115 4.115 4 N -0.084 5.084 5 O 0.024 5.976 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.172 4.172 9 C 0.007 3.993 10 N -0.251 5.251 11 C 0.069 3.931 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.050 4.050 21 C -0.147 4.147 22 C -0.214 4.214 23 C -0.228 4.228 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.395 8.324 -10.188 13.230 hybrid contribution -0.643 -0.370 1.480 1.656 sum 0.752 7.954 -8.707 11.817 Atomic orbital electron populations 1.21689 0.94416 1.02107 1.01877 1.19984 0.95944 0.88379 1.04403 1.23392 1.00952 0.98895 0.88237 1.73768 1.17561 0.92908 1.24148 1.84733 1.63309 1.27047 1.22526 1.24130 1.04310 0.99039 0.83873 1.20373 1.02461 0.91547 0.98555 1.21159 1.05266 0.92495 0.98237 1.20247 0.94800 0.98245 0.85960 1.62089 1.02833 1.29846 1.30311 1.19785 0.97792 0.93603 0.81937 1.21188 1.31610 1.06410 0.95086 0.91880 1.24961 0.96156 0.98004 0.95348 1.69962 1.45288 1.38669 0.99802 0.86523 0.79860 0.83398 0.78153 1.19576 1.21092 1.21183 1.21788 0.90569 0.93278 0.99393 1.22239 0.90531 1.00479 1.01411 1.22967 1.04181 1.03035 0.91261 1.22939 0.99348 0.98864 1.01623 0.91821 0.92152 0.93144 0.90793 0.88007 0.89550 0.90295 0.89312 0.88517 0.94948 0.93994 0.99549 0.93032 0.95695 0.91386 0.87249 0.89201 0.89196 0.89408 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.16 0.37 -1.59 16 2 C -0.05 -0.76 6.44 -27.88 -0.18 -0.94 16 3 C 0.04 0.75 6.58 -82.10 -0.54 0.21 16 4 N -0.38 -6.50 12.07 33.43 0.40 -6.10 16 5 O 0.09 1.39 11.20 17.18 0.19 1.59 16 6 C -0.05 -0.72 6.62 -35.30 -0.23 -0.95 16 7 C -0.07 -0.76 9.32 36.01 0.34 -0.42 16 8 C -0.17 -2.79 5.21 -104.43 -0.54 -3.33 16 9 C 0.14 2.48 5.13 -4.97 -0.03 2.45 16 10 N -0.53 -10.64 4.38 -237.52 -1.04 -11.69 16 11 C 0.19 4.74 4.57 -4.98 -0.02 4.72 16 12 C -0.50 -13.41 8.54 -34.44 -0.29 -13.71 16 13 H 0.06 1.65 7.43 -52.49 -0.39 1.26 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.08 1.35 5.02 -3.82 -0.02 1.33 16 21 C -0.13 -2.16 5.06 -90.62 -0.46 -2.62 16 22 C -0.18 -2.77 10.07 -26.69 -0.27 -3.04 16 23 C -0.19 -2.59 10.25 -26.69 -0.27 -2.87 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.09 0.84 6.89 -51.93 -0.36 0.49 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.90 7.44 -51.93 -0.39 0.52 16 32 H 0.10 1.91 7.03 -51.93 -0.36 1.55 16 33 H 0.03 0.56 7.42 -51.93 -0.39 0.18 16 34 H 0.04 1.12 7.15 -51.93 -0.37 0.74 16 35 H -0.01 -0.35 8.05 -51.93 -0.42 -0.77 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.43 7.76 -51.93 -0.40 0.03 16 38 H 0.07 1.06 3.65 -51.93 -0.19 0.87 16 39 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -29.29 350.54 -8.75 -38.04 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.05 Total: 1.33 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.25 Total: -19.31 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.10 Total: -42.92 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.29 -8.75 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119343160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.303 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds