Wall clock time and date at job start Tue Mar 31 2020 00:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46855 * 2 1 4 4 N 1.30180 * 126.79904 * 269.97390 * 3 2 1 5 5 O 1.20928 * 111.60335 * 180.02562 * 4 3 2 6 6 C 1.34037 * 111.56462 * 359.76208 * 5 4 3 7 7 C 1.50703 * 126.77485 * 180.28093 * 6 5 4 8 8 C 1.35455 * 106.44697 * 0.38268 * 6 5 4 9 9 C 1.50699 * 128.00330 * 179.91404 * 8 6 5 10 10 N 1.46908 * 109.47006 * 269.67408 * 9 8 6 11 11 C 1.46894 * 111.00059 * 190.00374 * 10 9 8 12 12 C 1.50703 * 109.47255 * 72.17174 * 11 10 9 13 13 H 1.08002 * 120.00091 * 355.15773 * 12 11 10 14 14 C 1.37879 * 120.00036 * 175.15205 * 12 11 10 15 15 N 1.31519 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47163 * 120.00260 * 16 14 12 19 19 H 1.48501 * 109.46964 * 239.99697 * 16 14 12 20 20 C 1.46901 * 111.00060 * 66.04836 * 10 9 8 21 21 C 1.53001 * 109.46884 * 197.63295 * 20 10 9 22 22 C 1.52997 * 117.49420 * 244.25156 * 21 20 10 23 23 C 1.52996 * 117.49582 * 175.59280 * 21 20 10 24 24 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47276 * 300.00273 * 1 2 3 26 26 H 1.08998 * 109.47503 * 60.00513 * 1 2 3 27 27 H 1.08997 * 109.47223 * 240.00282 * 2 1 3 28 28 H 1.08998 * 109.47503 * 119.99487 * 2 1 3 29 29 H 1.08993 * 109.47372 * 270.11658 * 7 6 5 30 30 H 1.08997 * 109.46956 * 30.12277 * 7 6 5 31 31 H 1.09007 * 109.46751 * 150.11530 * 7 6 5 32 32 H 1.08998 * 109.47277 * 149.67778 * 9 8 6 33 33 H 1.08994 * 109.47533 * 29.67351 * 9 8 6 34 34 H 1.08997 * 109.47282 * 192.17267 * 11 10 9 35 35 H 1.09004 * 109.47054 * 312.17320 * 11 10 9 36 36 H 0.97000 * 120.00177 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.47058 * 77.62796 * 20 10 9 38 38 H 1.09002 * 109.46736 * 317.62682 * 20 10 9 39 39 H 1.08994 * 115.55295 * 29.92056 * 21 20 10 40 40 H 1.09000 * 117.50166 * 359.97438 * 22 21 20 41 41 H 1.08993 * 117.50289 * 145.02116 * 22 21 20 42 42 H 1.08997 * 117.50209 * 214.97419 * 23 21 20 43 43 H 1.09005 * 117.50248 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1559 -1.0424 5 8 2.6819 3.2561 -0.7254 6 6 2.7264 3.3981 0.6067 7 6 3.1528 4.6259 1.3694 8 6 2.3147 2.2193 1.1319 9 6 2.1820 1.8475 2.5863 10 7 3.4443 1.2640 3.0597 11 6 3.2835 0.6744 4.3954 12 6 2.4738 -0.5924 4.2913 13 1 2.0485 -0.8850 3.3427 14 6 2.2761 -1.3779 5.4071 15 7 2.7936 -1.0214 6.5624 16 14 1.2730 -2.9485 5.2778 17 1 0.8056 -3.1236 3.8793 18 1 2.1161 -4.1076 5.6663 19 1 0.1006 -2.8631 6.1852 20 6 4.5218 2.2624 3.0511 21 6 5.8755 1.5524 3.1160 22 6 6.7409 1.7934 4.3545 23 6 7.1328 2.4181 3.0132 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 4.2259 4.5838 1.5552 30 1 2.9198 5.5158 0.7847 31 1 2.6207 4.6661 2.3199 32 1 1.3789 1.1200 2.7035 33 1 1.9525 2.7391 3.1698 34 1 4.2643 0.4454 4.8121 35 1 2.7689 1.3821 5.0454 36 1 2.6542 -1.5738 7.3475 37 1 4.4146 2.9200 3.9138 38 1 4.4640 2.8515 2.1358 39 1 5.9086 0.5612 2.6640 40 1 6.3460 2.4580 5.1229 41 1 7.3436 0.9608 4.7171 42 1 7.9933 1.9962 2.4939 43 1 6.9956 3.4934 2.8989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119343160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:35 Heat of formation + Delta-G solvation = 59.357589 kcal Electronic energy + Delta-G solvation = -22643.876438 eV Core-core repulsion = 19499.239218 eV Total energy + Delta-G solvation = -3144.637220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.86166 -39.44801 -37.37954 -36.14145 -34.96789 -33.99346 -32.21621 -29.68363 -29.50047 -27.73602 -25.96005 -25.14821 -23.32787 -23.11660 -21.98169 -21.00651 -20.71987 -18.71362 -18.43405 -17.90219 -16.89820 -16.45619 -16.05924 -15.71399 -15.67006 -15.16343 -14.98623 -14.51769 -14.36727 -14.20958 -13.81185 -13.69074 -13.43084 -13.24716 -13.06980 -12.82179 -12.59380 -12.50723 -12.41214 -12.36005 -12.31447 -12.13432 -11.94435 -11.61538 -11.35506 -11.09684 -10.77485 -10.65532 -10.53792 -10.06450 -8.96811 -8.15035 -6.23065 0.54384 1.26178 1.41268 1.43318 1.55239 2.24200 2.43065 2.95576 3.16810 3.22525 3.40907 3.58535 3.87888 3.96416 4.06421 4.12856 4.23817 4.25828 4.37357 4.42859 4.52694 4.59076 4.63249 4.68258 4.76241 4.79496 4.80548 4.86138 4.95039 4.98787 5.03752 5.06275 5.17337 5.23715 5.25285 5.28468 5.33584 5.37994 5.44511 5.73233 6.13464 6.40606 6.68098 6.92894 7.36669 7.45837 8.95594 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.007329 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.436339 B = 3819.320506 C = 5570.483727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C 0.034 3.966 4 N -0.393 5.393 5 O 0.090 5.910 6 C -0.026 4.026 7 C -0.076 4.076 8 C -0.194 4.194 9 C 0.145 3.855 10 N -0.535 5.535 11 C 0.213 3.787 12 C -0.513 4.513 13 H 0.062 0.938 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.957 3.043 17 H -0.261 1.261 18 H -0.283 1.283 19 H -0.281 1.281 20 C 0.083 3.917 21 C -0.157 4.157 22 C -0.189 4.189 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.015 0.985 35 H -0.039 1.039 36 H 0.262 0.738 37 H 0.025 0.975 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 10.166 -10.039 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.125 4.125 4 N -0.100 5.100 5 O 0.027 5.973 6 C -0.090 4.090 7 C -0.132 4.132 8 C -0.199 4.199 9 C 0.017 3.983 10 N -0.259 5.259 11 C 0.087 3.913 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.193 4.193 15 N -0.574 5.574 16 Si 0.782 3.218 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.206 1.206 20 C -0.044 4.044 21 C -0.176 4.176 22 C -0.226 4.226 23 C -0.189 4.189 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.034 0.966 35 H -0.021 1.021 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.567 9.549 -11.509 15.036 hybrid contribution -0.653 -0.677 1.861 2.085 sum 0.914 8.873 -9.648 13.139 Atomic orbital electron populations 1.21644 0.92953 1.03049 1.01781 1.19972 0.97219 0.87838 1.03626 1.23626 1.00952 0.99446 0.88479 1.73757 1.18521 0.93432 1.24336 1.84717 1.62954 1.26553 1.23075 1.24751 1.01534 0.99424 0.83327 1.20638 1.03268 0.90726 0.98614 1.20965 1.07954 0.93837 0.97094 1.20032 0.93148 0.97750 0.87342 1.61986 1.04641 1.31820 1.27459 1.19357 0.95472 0.92761 0.83665 1.21504 1.31491 1.07160 0.95025 0.91940 1.25781 0.97256 1.01242 0.95004 1.70082 1.46747 1.40077 1.00527 0.85513 0.78338 0.79298 0.78617 1.18456 1.20953 1.20642 1.21827 0.89642 0.92675 1.00297 1.22177 0.91881 1.00436 1.03081 1.22990 1.04280 1.03467 0.91896 1.23043 0.97349 0.99674 0.98837 0.90387 0.92997 0.92379 0.89947 0.90255 0.88046 0.87273 0.88783 0.90779 0.94020 0.96643 1.02117 0.92949 0.95648 0.89296 0.89828 0.89442 0.89654 0.87794 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.89 71.98 0.71 -2.94 16 2 C -0.05 -1.51 6.44 29.85 0.19 -1.32 16 3 C 0.03 1.13 6.58 43.58 0.29 1.41 16 4 N -0.39 -13.07 12.07 -49.54 -0.60 -13.67 16 5 O 0.09 2.67 11.20 71.66 0.80 3.47 16 6 C -0.03 -0.70 6.62 25.04 0.17 -0.53 16 7 C -0.08 -1.32 9.32 71.24 0.66 -0.65 16 8 C -0.19 -6.32 5.21 -19.74 -0.10 -6.42 16 9 C 0.15 5.35 5.13 85.55 0.44 5.79 16 10 N -0.53 -22.05 4.38 -905.36 -3.97 -26.02 16 11 C 0.21 10.87 4.57 85.56 0.39 11.26 16 12 C -0.51 -28.08 8.54 25.60 0.22 -27.86 16 13 H 0.06 3.36 7.43 -2.91 -0.02 3.33 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 16 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.08 2.82 5.02 86.30 0.43 3.26 16 21 C -0.16 -5.26 5.06 -10.80 -0.05 -5.31 16 22 C -0.19 -5.85 10.07 30.62 0.31 -5.54 16 23 C -0.15 -3.75 10.25 30.62 0.31 -3.44 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.10 1.55 6.89 -2.39 -0.02 1.53 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.61 7.44 -2.38 -0.02 1.59 16 32 H 0.07 3.03 7.03 -2.39 -0.02 3.02 16 33 H 0.04 1.44 7.42 -2.39 -0.02 1.42 16 34 H 0.02 0.86 7.15 -2.39 -0.02 0.85 16 35 H -0.04 -2.13 8.05 -2.38 -0.02 -2.15 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.03 0.86 7.76 -2.39 -0.02 0.84 16 38 H 0.09 2.59 3.65 -2.39 -0.01 2.58 16 39 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -64.45 350.54 3.96 -60.49 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.98 Total: 16.50 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.43 Total: -31.55 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -4.28 Total: -94.53 kcal Atomic # 8 Polarization: 2.67 SS G_CDS: 0.80 Total: 3.47 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -64.45 3.96 -60.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119343160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.845 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds