Wall clock time and date at job start Mon Mar 30 2020 23:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30173 * 126.80387 * 2 1 4 4 O 1.20921 * 111.60581 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56652 * 359.75654 * 4 3 2 6 6 C 1.50703 * 126.77560 * 180.28911 * 5 4 3 7 7 C 1.35448 * 106.44090 * 0.38680 * 5 4 3 8 8 C 1.50706 * 127.99866 * 179.91037 * 7 5 4 9 9 C 1.53002 * 109.47068 * 269.67328 * 8 7 5 10 10 N 1.46895 * 109.47258 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99648 * 45.74906 * 10 9 8 12 12 C 1.53037 * 109.52285 * 185.80147 * 11 10 9 13 13 C 1.53114 * 109.31211 * 300.88400 * 12 11 10 14 14 C 1.53125 * 109.16368 * 57.63311 * 13 12 11 15 15 H 1.09005 * 109.49488 * 62.28510 * 14 13 12 16 16 C 1.50696 * 109.50521 * 182.40526 * 14 13 12 17 17 H 1.07998 * 120.00051 * 120.00106 * 16 14 13 18 18 C 1.37882 * 120.00182 * 300.00142 * 16 14 13 19 19 N 1.31517 * 119.99859 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00064 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47267 * 90.00060 * 20 18 16 22 22 H 1.48502 * 109.47063 * 210.00207 * 20 18 16 23 23 H 1.48504 * 109.46980 * 329.99807 * 20 18 16 24 24 C 1.46840 * 111.00367 * 170.00345 * 10 9 8 25 25 H 1.08999 * 109.47184 * 269.97287 * 1 2 3 26 26 H 1.09007 * 109.47434 * 29.97374 * 1 2 3 27 27 H 1.09003 * 109.47576 * 149.97524 * 1 2 3 28 28 H 1.08997 * 109.46966 * 270.11657 * 6 5 4 29 29 H 1.08995 * 109.46891 * 30.11716 * 6 5 4 30 30 H 1.09004 * 109.46513 * 150.11493 * 6 5 4 31 31 H 1.09003 * 109.46543 * 149.68062 * 8 7 5 32 32 H 1.08995 * 109.47459 * 29.67672 * 8 7 5 33 33 H 1.09002 * 109.46663 * 60.00152 * 9 8 7 34 34 H 1.08995 * 109.47261 * 300.00465 * 9 8 7 35 35 H 1.09000 * 109.42692 * 65.80880 * 11 10 9 36 36 H 1.09000 * 109.49358 * 305.83873 * 11 10 9 37 37 H 1.09002 * 109.50283 * 180.92217 * 12 11 10 38 38 H 1.09003 * 109.50113 * 60.84405 * 12 11 10 39 39 H 1.08998 * 109.52405 * 177.54026 * 13 12 11 40 40 H 1.09004 * 109.52689 * 297.66875 * 13 12 11 41 41 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46294 * 54.14190 * 24 10 9 43 43 H 1.09003 * 109.45458 * 294.17243 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0044 6 6 4.9021 -1.3696 0.0115 7 6 2.3538 -1.1320 -0.0005 8 6 1.9590 -2.5864 0.0000 9 6 1.8241 -3.0788 -1.4423 10 7 1.4387 -4.4963 -1.4418 11 6 0.3536 -4.7462 -0.4843 12 6 0.0776 -6.2494 -0.4050 13 6 -0.3108 -6.7668 -1.7928 14 6 0.8160 -6.4510 -2.7804 15 1 1.7241 -6.9707 -2.4746 16 6 0.4166 -6.9043 -4.1610 17 1 0.3535 -6.1884 -4.9672 18 6 0.1318 -8.2329 -4.3950 19 7 0.2082 -9.1046 -3.4132 20 14 -0.3625 -8.7948 -6.1065 21 1 0.8513 -9.1770 -6.8719 22 1 -1.2699 -9.9655 -6.0003 23 1 -1.0620 -7.6884 -6.8079 24 6 1.0700 -4.9419 -2.7915 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 5.2201 -1.5551 -1.0144 29 1 5.6635 -0.7852 0.5279 30 1 4.7626 -2.3203 0.5262 31 1 1.0053 -2.7037 0.5146 32 1 2.7231 -3.1702 0.5133 33 1 2.7778 -2.9614 -1.9569 34 1 1.0601 -2.4951 -1.9556 35 1 -0.5471 -4.2285 -0.8139 36 1 0.6447 -4.3780 0.4995 37 1 -0.7387 -6.4332 0.2935 38 1 0.9737 -6.7663 -0.0616 39 1 -0.4657 -7.8448 -1.7494 40 1 -1.2296 -6.2796 -2.1193 41 1 0.0083 -10.0393 -3.5779 42 1 1.8814 -4.7153 -3.4831 43 1 0.1656 -4.4238 -3.1105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:20 Heat of formation + Delta-G solvation = 42.633115 kcal Electronic energy + Delta-G solvation = -21983.406589 eV Core-core repulsion = 18838.044142 eV Total energy + Delta-G solvation = -3145.362447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.97757 -38.50747 -35.89537 -34.07492 -33.48724 -31.90155 -30.22849 -29.32923 -28.72900 -27.34234 -25.03396 -24.24287 -21.91405 -21.78887 -20.47686 -19.97308 -18.62295 -17.72538 -16.97538 -16.38538 -15.34544 -14.99405 -14.68466 -14.12651 -14.04516 -13.65494 -13.58356 -13.28538 -13.21174 -12.99864 -12.73225 -12.61465 -12.48794 -12.39005 -12.00251 -11.68954 -11.51940 -11.22063 -10.95999 -10.86954 -10.66763 -10.52781 -10.08692 -9.88839 -9.82492 -9.47469 -9.25307 -8.93715 -8.70074 -8.30145 -7.67854 -5.97655 -4.03816 1.38615 2.12007 3.03785 3.30627 3.37430 3.40375 4.07896 4.35151 4.38282 4.53167 4.73071 4.99720 5.13308 5.20344 5.29254 5.31148 5.32857 5.34526 5.46567 5.54561 5.61582 5.64640 5.70249 5.81221 5.85819 6.01897 6.06103 6.14843 6.17659 6.29820 6.41538 6.50380 6.70638 6.74758 6.96476 7.21249 7.39311 7.64592 7.74751 7.80762 8.08199 8.17429 8.21039 8.48071 9.00213 9.60534 11.08246 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003520 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.111871 B = 7952.529883 C = 8069.795879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 N -0.372 5.372 4 O 0.093 5.907 5 C -0.032 4.032 6 C -0.073 4.073 7 C -0.192 4.192 8 C -0.045 4.045 9 C 0.062 3.938 10 N -0.537 5.537 11 C 0.056 3.944 12 C -0.118 4.118 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 13.923 9.175 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.078 5.078 4 O 0.028 5.972 5 C -0.096 4.096 6 C -0.131 4.131 7 C -0.196 4.196 8 C -0.083 4.083 9 C -0.066 4.066 10 N -0.262 5.262 11 C -0.072 4.072 12 C -0.156 4.156 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.052 0.948 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.058 4.058 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.637 14.778 9.349 18.092 hybrid contribution -1.131 -0.574 -1.250 1.781 sum 3.506 14.204 8.100 16.723 Atomic orbital electron populations 1.20170 0.86109 1.03853 1.03271 1.23463 0.98887 0.88610 1.02671 1.73812 0.89357 1.24031 1.20608 1.84772 1.21592 1.22707 1.68129 1.24288 0.98389 0.83610 1.03264 1.20354 0.89776 0.98615 1.04313 1.21032 0.91519 0.97729 1.09357 1.20113 1.02629 0.87333 0.98202 1.22024 1.00464 0.89255 0.94830 1.62091 1.39320 1.15412 1.09370 1.22160 0.91807 0.97859 0.95365 1.21680 1.00166 0.93968 0.99744 1.21652 0.98251 1.03232 0.91756 1.18661 0.95183 0.88049 0.94477 0.94753 1.21151 1.46247 0.93265 0.94722 0.92895 1.24927 0.95443 0.96754 0.96674 1.69890 1.49346 1.02538 1.30934 0.86636 0.78445 0.78244 0.84902 1.20696 1.21271 1.20039 1.22308 0.97442 0.99658 0.86433 0.90231 0.90635 0.89921 0.89256 0.90097 0.88756 0.90206 0.89676 0.91118 0.95538 0.96017 0.91834 0.93599 0.92085 0.89114 0.95235 0.93067 0.92336 0.96323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.00 0.37 -0.40 16 2 C 0.02 0.29 7.33 -82.11 -0.60 -0.32 16 3 N -0.37 -5.19 12.07 33.42 0.40 -4.78 16 4 O 0.09 1.19 11.20 17.16 0.19 1.38 16 5 C -0.03 -0.36 7.49 -35.30 -0.26 -0.62 16 6 C -0.07 -0.55 10.30 36.01 0.37 -0.18 16 7 C -0.19 -2.31 5.58 -104.42 -0.58 -2.90 16 8 C -0.04 -0.53 4.79 -27.88 -0.13 -0.67 16 9 C 0.06 0.90 5.26 -3.83 -0.02 0.88 16 10 N -0.54 -9.45 4.80 -234.67 -1.13 -10.58 16 11 C 0.06 0.93 4.85 -3.83 -0.02 0.91 16 12 C -0.12 -2.22 6.09 -26.65 -0.16 -2.39 16 13 C -0.11 -2.58 5.02 -26.61 -0.13 -2.71 16 14 C 0.06 1.36 2.26 -91.69 -0.21 1.15 16 15 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.52 -14.00 8.56 -34.44 -0.29 -14.30 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.09 11.35 55.43 0.63 -24.46 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.07 1.43 4.65 -3.84 -0.02 1.41 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.65 7.44 -51.93 -0.39 0.26 16 31 H 0.08 0.93 6.21 -51.93 -0.32 0.60 16 32 H 0.08 0.96 7.44 -51.93 -0.39 0.57 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.89 5.82 -51.93 -0.30 0.59 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -29.49 341.16 -8.74 -38.23 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.17 Total: -2.53 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.79 Total: -18.48 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: -0.09 Total: -39.82 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.19 Total: 1.38 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.49 -8.74 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.860 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds