Wall clock time and date at job start Mon Mar 30 2020 23:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30173 * 126.80387 * 2 1 4 4 O 1.20921 * 111.60581 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56652 * 359.75654 * 4 3 2 6 6 C 1.50703 * 126.77560 * 180.28911 * 5 4 3 7 7 C 1.35448 * 106.44090 * 0.38680 * 5 4 3 8 8 C 1.50706 * 127.99866 * 179.91037 * 7 5 4 9 9 C 1.53002 * 109.47068 * 269.67328 * 8 7 5 10 10 N 1.46895 * 109.47258 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99648 * 45.74906 * 10 9 8 12 12 C 1.53037 * 109.52285 * 185.80147 * 11 10 9 13 13 C 1.53114 * 109.31211 * 300.88400 * 12 11 10 14 14 C 1.53125 * 109.16368 * 57.63311 * 13 12 11 15 15 H 1.09005 * 109.49488 * 62.28510 * 14 13 12 16 16 C 1.50696 * 109.50521 * 182.40526 * 14 13 12 17 17 H 1.07998 * 120.00051 * 120.00106 * 16 14 13 18 18 C 1.37882 * 120.00182 * 300.00142 * 16 14 13 19 19 N 1.31517 * 119.99859 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00064 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47267 * 90.00060 * 20 18 16 22 22 H 1.48502 * 109.47063 * 210.00207 * 20 18 16 23 23 H 1.48504 * 109.46980 * 329.99807 * 20 18 16 24 24 C 1.46840 * 111.00367 * 170.00345 * 10 9 8 25 25 H 1.08999 * 109.47184 * 269.97287 * 1 2 3 26 26 H 1.09007 * 109.47434 * 29.97374 * 1 2 3 27 27 H 1.09003 * 109.47576 * 149.97524 * 1 2 3 28 28 H 1.08997 * 109.46966 * 270.11657 * 6 5 4 29 29 H 1.08995 * 109.46891 * 30.11716 * 6 5 4 30 30 H 1.09004 * 109.46513 * 150.11493 * 6 5 4 31 31 H 1.09003 * 109.46543 * 149.68062 * 8 7 5 32 32 H 1.08995 * 109.47459 * 29.67672 * 8 7 5 33 33 H 1.09002 * 109.46663 * 60.00152 * 9 8 7 34 34 H 1.08995 * 109.47261 * 300.00465 * 9 8 7 35 35 H 1.09000 * 109.42692 * 65.80880 * 11 10 9 36 36 H 1.09000 * 109.49358 * 305.83873 * 11 10 9 37 37 H 1.09002 * 109.50283 * 180.92217 * 12 11 10 38 38 H 1.09003 * 109.50113 * 60.84405 * 12 11 10 39 39 H 1.08998 * 109.52405 * 177.54026 * 13 12 11 40 40 H 1.09004 * 109.52689 * 297.66875 * 13 12 11 41 41 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46294 * 54.14190 * 24 10 9 43 43 H 1.09003 * 109.45458 * 294.17243 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6069 0.0044 6 6 4.9021 -1.3696 0.0115 7 6 2.3538 -1.1320 -0.0005 8 6 1.9590 -2.5864 0.0000 9 6 1.8241 -3.0788 -1.4423 10 7 1.4387 -4.4963 -1.4418 11 6 0.3536 -4.7462 -0.4843 12 6 0.0776 -6.2494 -0.4050 13 6 -0.3108 -6.7668 -1.7928 14 6 0.8160 -6.4510 -2.7804 15 1 1.7241 -6.9707 -2.4746 16 6 0.4166 -6.9043 -4.1610 17 1 0.3535 -6.1884 -4.9672 18 6 0.1318 -8.2329 -4.3950 19 7 0.2082 -9.1046 -3.4132 20 14 -0.3625 -8.7948 -6.1065 21 1 0.8513 -9.1770 -6.8719 22 1 -1.2699 -9.9655 -6.0003 23 1 -1.0620 -7.6884 -6.8079 24 6 1.0700 -4.9419 -2.7915 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 5.2201 -1.5551 -1.0144 29 1 5.6635 -0.7852 0.5279 30 1 4.7626 -2.3203 0.5262 31 1 1.0053 -2.7037 0.5146 32 1 2.7231 -3.1702 0.5133 33 1 2.7778 -2.9614 -1.9569 34 1 1.0601 -2.4951 -1.9556 35 1 -0.5471 -4.2285 -0.8139 36 1 0.6447 -4.3780 0.4995 37 1 -0.7387 -6.4332 0.2935 38 1 0.9737 -6.7663 -0.0616 39 1 -0.4657 -7.8448 -1.7494 40 1 -1.2296 -6.2796 -2.1193 41 1 0.0083 -10.0393 -3.5779 42 1 1.8814 -4.7153 -3.4831 43 1 0.1656 -4.4238 -3.1105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:19 Heat of formation + Delta-G solvation = 25.960108 kcal Electronic energy + Delta-G solvation = -21984.129585 eV Core-core repulsion = 18838.044142 eV Total energy + Delta-G solvation = -3146.085443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.89849 -39.97835 -37.03175 -35.48103 -34.59909 -33.51743 -31.81372 -30.59138 -29.58964 -28.20600 -26.91374 -25.59912 -23.40645 -23.13742 -21.64530 -20.93681 -20.31651 -18.68596 -18.38087 -17.88734 -16.86198 -16.42947 -16.01514 -15.59844 -15.11022 -14.95260 -14.61836 -14.41845 -14.32171 -14.20358 -13.87383 -13.72767 -13.68669 -13.41496 -13.20795 -13.04115 -12.86362 -12.83989 -12.57294 -12.44987 -12.18557 -11.82168 -11.69834 -11.56724 -11.35374 -10.93333 -10.72582 -10.62438 -10.35902 -10.00365 -9.10610 -8.06688 -6.20612 0.51038 1.20630 1.41800 1.42619 1.52345 2.22274 2.43756 3.07713 3.20267 3.28745 3.55391 3.84724 4.08275 4.13763 4.24222 4.32510 4.38303 4.43640 4.50663 4.56816 4.62032 4.66973 4.70938 4.73938 4.76222 4.86564 4.92445 4.94227 4.98396 5.07651 5.12066 5.15326 5.20130 5.23256 5.36123 5.44824 5.55617 5.65590 5.99413 6.14990 6.23439 6.38032 6.48058 6.92155 7.31453 7.47178 8.97666 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003520 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.111871 B = 7952.529883 C = 8069.795879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 N -0.401 5.401 4 O 0.080 5.920 5 C -0.023 4.023 6 C -0.075 4.075 7 C -0.209 4.209 8 C -0.032 4.032 9 C 0.067 3.933 10 N -0.543 5.543 11 C 0.059 3.941 12 C -0.112 4.112 13 C -0.105 4.105 14 C 0.053 3.947 15 H -0.001 1.001 16 C -0.538 4.538 17 H 0.049 0.951 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.082 3.918 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.260 0.740 42 H 0.054 0.946 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 14.736 9.896 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 N -0.110 5.110 4 O 0.019 5.981 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.213 4.213 8 C -0.069 4.069 9 C -0.061 4.061 10 N -0.267 5.267 11 C -0.068 4.068 12 C -0.149 4.149 13 C -0.143 4.143 14 C 0.034 3.966 15 H 0.017 0.983 16 C -0.576 4.576 17 H 0.067 0.933 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.195 1.195 24 C -0.045 4.045 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.856 15.606 10.076 19.200 hybrid contribution -1.150 -0.829 -1.468 2.041 sum 3.706 14.777 8.608 17.498 Atomic orbital electron populations 1.20265 0.84683 1.04116 1.04362 1.23935 1.00039 0.88649 1.01756 1.73808 0.89878 1.24980 1.22307 1.84742 1.21350 1.23648 1.68397 1.24932 0.99585 0.83062 1.01067 1.20563 0.88550 0.98819 1.05240 1.21071 0.91848 0.97587 1.10836 1.19972 1.03463 0.87241 0.96253 1.22032 1.00169 0.87019 0.96876 1.62007 1.39551 1.17689 1.07471 1.22198 0.91792 0.95994 0.96852 1.21600 1.00595 0.95607 0.97142 1.21464 0.97335 1.01141 0.94366 1.18584 0.93973 0.90325 0.93717 0.98254 1.21532 1.46447 0.93659 0.95983 0.93295 1.25683 0.95453 0.96902 1.00276 1.70028 1.49908 1.02697 1.32691 0.85657 0.78210 0.77814 0.80564 1.20133 1.20847 1.19497 1.21960 0.96991 0.96986 0.88611 0.88670 0.90415 0.89584 0.88425 0.88234 0.87688 0.89446 0.88515 0.90969 0.96064 0.95751 0.88150 0.91243 0.92845 0.92472 0.96157 0.93068 0.92736 0.96987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.39 71.23 0.74 -0.67 16 2 C 0.01 0.35 7.33 43.57 0.32 0.67 16 3 N -0.40 -10.80 12.07 -49.56 -0.60 -11.40 16 4 O 0.08 1.97 11.20 71.57 0.80 2.77 16 5 C -0.02 -0.47 7.49 25.04 0.19 -0.28 16 6 C -0.07 -0.91 10.30 71.24 0.73 -0.18 16 7 C -0.21 -4.57 5.58 -19.73 -0.11 -4.68 16 8 C -0.03 -0.65 4.79 29.85 0.14 -0.51 16 9 C 0.07 1.78 5.26 86.30 0.45 2.23 16 10 N -0.54 -18.22 4.80 -896.38 -4.31 -22.52 16 11 C 0.06 1.81 4.85 86.32 0.42 2.23 16 12 C -0.11 -4.07 6.09 30.64 0.19 -3.89 16 13 C -0.10 -4.95 5.02 30.67 0.15 -4.79 16 14 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 15 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 16 C -0.54 -29.83 8.56 25.60 0.22 -29.62 16 17 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 18 C 0.02 0.87 5.30 84.66 0.45 1.32 16 19 N -0.91 -52.79 11.35 21.45 0.24 -52.54 16 20 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.08 3.43 4.65 86.33 0.40 3.83 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.10 7.44 -2.38 -0.02 1.08 16 31 H 0.09 1.69 6.21 -2.39 -0.01 1.68 16 32 H 0.10 1.82 7.44 -2.39 -0.02 1.80 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.02 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 2.40 5.82 -2.39 -0.01 2.39 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 3.07 6.15 -2.39 -0.01 3.06 16 40 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.05 2.27 8.12 -2.39 -0.02 2.25 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -64.79 341.16 3.41 -61.38 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.98 Total: 8.35 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 4.27 Total: -31.69 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -4.66 Total: -86.47 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.80 Total: 2.77 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.79 3.41 -61.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.340 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds