Wall clock time and date at job start Tue Mar 31 2020 00:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 C 1.53006 * 109.46644 * 119.99742 * 2 1 3 5 5 C 1.53001 * 109.47086 * 174.99761 * 4 2 1 6 6 N 1.46498 * 109.47202 * 180.02562 * 5 4 2 7 7 C 1.46501 * 120.00157 * 269.99992 * 6 5 4 8 8 C 1.50697 * 109.47172 * 263.02625 * 7 6 5 9 9 H 1.08004 * 120.00200 * 4.67395 * 8 7 6 10 10 C 1.37883 * 119.99689 * 184.67759 * 8 7 6 11 11 N 1.31515 * 119.99992 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99601 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47446 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46789 * 120.00115 * 12 10 8 15 15 H 1.48500 * 109.47195 * 239.99528 * 12 10 8 16 16 C 1.34779 * 119.99810 * 90.00390 * 6 5 4 17 17 O 1.21691 * 120.00288 * 0.58902 * 16 6 5 18 18 C 1.46675 * 119.99694 * 180.59410 * 16 6 5 19 19 C 1.37873 * 126.23542 * 349.99585 * 18 16 6 20 20 C 1.39836 * 107.08843 * 179.97438 * 19 18 16 21 21 C 1.35451 * 107.86215 * 359.97438 * 20 19 18 22 22 N 1.35533 * 108.87303 * 0.02562 * 21 20 19 23 23 C 1.46508 * 125.67813 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47668 * 300.00233 * 1 2 3 25 25 H 1.09001 * 109.46743 * 60.00061 * 1 2 3 26 26 H 1.08998 * 109.47846 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47239 * 239.99700 * 2 1 3 28 28 H 1.09001 * 109.47211 * 60.00066 * 3 2 1 29 29 H 1.09006 * 109.46857 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47179 * 299.99672 * 3 2 1 31 31 H 1.09008 * 109.47140 * 55.00232 * 4 2 1 32 32 H 1.08988 * 109.47399 * 294.99979 * 4 2 1 33 33 H 1.08999 * 109.46960 * 60.00290 * 5 4 2 34 34 H 1.09001 * 109.47351 * 300.00654 * 5 4 2 35 35 H 1.09001 * 109.46872 * 23.02378 * 7 6 5 36 36 H 1.08994 * 109.47081 * 143.02146 * 7 6 5 37 37 H 0.96997 * 119.99305 * 179.97438 * 11 10 8 38 38 H 1.08000 * 126.45918 * 359.71611 * 19 18 16 39 39 H 1.07995 * 126.07054 * 179.97438 * 20 19 18 40 40 H 1.08004 * 125.56449 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47097 * 274.82842 * 23 22 21 42 42 H 1.09003 * 109.46752 * 34.82667 * 23 22 21 43 43 H 1.08996 * 109.46588 * 154.82059 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 3.5647 -0.8312 1.1882 6 7 4.0529 -1.5223 2.3841 7 6 4.4013 -0.7551 3.5825 8 6 5.8880 -0.5104 3.6077 9 1 6.5008 -0.8220 2.7747 10 6 6.4660 0.1113 4.6943 11 7 5.7198 0.4912 5.7084 12 14 8.3091 0.4140 4.7258 13 1 8.9174 -0.1043 3.4742 14 1 8.5694 1.8718 4.8366 15 1 8.9057 -0.2853 5.8921 16 6 4.1815 -2.8639 2.3817 17 8 3.9024 -3.5002 1.3827 18 6 4.6579 -3.5570 3.5834 19 6 5.1893 -2.9645 4.7092 20 6 5.5078 -3.9919 5.6027 21 6 5.1723 -5.1679 5.0204 22 7 4.6550 -4.9174 3.7930 23 6 4.1721 -5.9266 2.8470 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6052 -1.7199 1.2953 32 1 1.7515 -0.1583 2.1370 33 1 3.9993 0.1674 1.1423 34 1 3.8531 -1.3941 0.3004 35 1 3.8761 0.1999 3.5680 36 1 4.1103 -1.3162 4.4704 37 1 6.1265 0.9282 6.4728 38 1 5.3362 -1.9066 4.8690 39 1 5.9439 -3.8695 6.5831 40 1 5.2968 -6.1456 5.4620 41 1 5.0094 -6.3050 2.2606 42 1 3.7122 -6.7484 3.3959 43 1 3.4355 -5.4773 2.1811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264068934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:04 Heat of formation + Delta-G solvation = 17.960568 kcal Electronic energy + Delta-G solvation = -22625.106087 eV Core-core repulsion = 19478.673758 eV Total energy + Delta-G solvation = -3146.432329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66727 -38.52087 -36.44036 -35.06702 -32.68784 -32.06185 -29.91393 -27.87518 -27.20369 -26.93521 -25.73665 -23.42665 -23.08303 -20.61948 -19.82902 -19.65671 -18.26785 -16.69872 -16.22632 -15.56368 -15.22642 -14.90705 -14.81743 -14.29993 -14.00845 -13.66092 -13.28971 -13.09728 -12.74028 -12.52930 -12.43356 -12.25265 -12.07084 -12.05178 -11.76615 -11.58559 -11.40888 -11.10389 -10.91382 -10.83223 -10.70744 -10.46723 -10.24275 -10.13698 -9.71833 -9.57027 -9.01293 -8.59537 -7.94629 -7.68899 -7.36714 -6.20114 -4.25207 2.31665 3.24243 3.33001 3.33903 3.39160 3.54758 4.13856 4.26721 4.38557 5.07499 5.12372 5.13145 5.16013 5.23511 5.43980 5.56635 5.58460 5.73027 5.73707 5.85801 5.90457 5.91542 6.01125 6.03010 6.12084 6.23858 6.26365 6.36727 6.40561 6.42579 6.63155 6.69843 6.79057 7.01025 7.20864 7.31939 7.58046 7.68776 7.77606 7.93782 7.97968 8.06329 8.34764 8.80979 9.09304 9.38874 10.84398 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.007533 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.183150 B = 3715.886463 C = 5630.854478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.122 3.878 6 N -0.584 5.584 7 C 0.214 3.786 8 C -0.532 4.532 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.887 5.887 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.280 1.280 16 C 0.590 3.410 17 O -0.591 6.591 18 C -0.063 4.063 19 C -0.130 4.130 20 C -0.223 4.223 21 C -0.005 4.005 22 N -0.426 5.426 23 C 0.074 3.926 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.267 0.733 38 H 0.221 0.779 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -4.557 -4.657 8.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.001 4.001 6 N -0.312 5.312 7 C 0.094 3.906 8 C -0.570 4.570 9 H 0.082 0.918 10 C -0.138 4.138 11 N -0.525 5.525 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.206 1.206 16 C 0.381 3.619 17 O -0.476 6.476 18 C -0.174 4.174 19 C -0.154 4.154 20 C -0.249 4.249 21 C -0.140 4.140 22 N -0.101 5.101 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.150 0.850 40 H 0.173 0.827 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.251 -4.995 -5.261 9.576 hybrid contribution 1.161 0.057 0.256 1.191 sum -5.089 -4.937 -5.004 8.679 Atomic orbital electron populations 1.21819 0.95608 1.01420 1.01345 1.21045 0.95357 0.96365 0.98472 1.21905 1.01620 0.95826 1.01324 1.22004 0.96501 1.00480 0.97637 1.21376 0.92976 0.97482 0.88297 1.47854 1.62392 1.05244 1.15707 1.20186 0.95740 0.91973 0.82667 1.21480 0.92683 1.38702 1.04163 0.91818 1.24922 0.98586 0.95028 0.95257 1.69932 1.35515 1.39719 1.07364 0.86465 0.85009 0.77904 0.78429 1.19639 1.20851 1.20556 1.16955 0.77022 0.82320 0.85621 1.90634 1.55124 1.66529 1.35279 1.20071 1.15824 0.82382 0.99087 1.23931 0.96676 1.04076 0.90730 1.20988 1.10126 0.92263 1.01484 1.21801 1.05679 0.99660 0.86839 1.43722 1.47223 1.05510 1.13658 1.22051 1.00982 0.90758 0.92953 0.92772 0.93079 0.92955 0.91359 0.92583 0.92096 0.93252 0.92080 0.91712 0.90272 0.91095 0.94746 0.91938 0.92300 0.76361 0.84990 0.82676 0.91605 0.91170 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.15 0.34 -1.32 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.49 16 3 C -0.15 -1.85 8.95 37.16 0.33 -1.51 16 4 C -0.13 -2.05 5.01 -26.73 -0.13 -2.18 16 5 C 0.12 2.27 5.14 -4.04 -0.02 2.25 16 6 N -0.58 -12.82 2.48 -176.61 -0.44 -13.25 16 7 C 0.21 5.10 4.70 -5.19 -0.02 5.07 16 8 C -0.53 -13.64 7.18 -34.44 -0.25 -13.88 16 9 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 10 C 0.07 1.68 4.71 -17.82 -0.08 1.60 16 11 N -0.89 -23.45 13.11 55.43 0.73 -22.72 16 12 Si 0.89 20.44 29.54 -169.99 -5.02 15.41 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 C 0.59 13.52 7.55 -12.85 -0.10 13.42 16 17 O -0.59 -13.79 14.31 5.20 0.07 -13.72 16 18 C -0.06 -1.41 6.74 -81.98 -0.55 -1.96 16 19 C -0.13 -2.98 8.12 -39.12 -0.32 -3.30 16 20 C -0.22 -4.43 10.81 -39.98 -0.43 -4.86 16 21 C -0.01 -0.10 11.38 -16.91 -0.19 -0.29 16 22 N -0.43 -8.10 3.16 -120.23 -0.38 -8.48 16 23 C 0.07 1.13 10.63 59.85 0.64 1.77 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.06 1.07 8.14 -51.94 -0.42 0.65 16 33 H 0.08 1.43 6.50 -51.93 -0.34 1.10 16 34 H 0.07 1.35 7.41 -51.93 -0.38 0.96 16 35 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 36 H 0.06 1.58 4.88 -51.93 -0.25 1.32 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.22 5.48 2.42 -52.49 -0.13 5.36 16 39 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 40 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.65 6.29 -51.93 -0.33 1.32 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -28.72 342.67 -7.73 -36.46 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.80 Total: 7.82 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.06 Total: -6.68 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.09 Total: -44.46 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.07 Total: -13.72 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.72 -7.73 -36.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.416 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds