Wall clock time and date at job start Tue Mar 31 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 C 1.53006 * 109.46644 * 119.99742 * 2 1 3 5 5 C 1.53001 * 109.47086 * 174.99761 * 4 2 1 6 6 N 1.46498 * 109.47202 * 180.02562 * 5 4 2 7 7 C 1.46501 * 120.00157 * 269.99992 * 6 5 4 8 8 C 1.50697 * 109.47172 * 263.02625 * 7 6 5 9 9 H 1.08004 * 120.00200 * 4.67395 * 8 7 6 10 10 C 1.37883 * 119.99689 * 184.67759 * 8 7 6 11 11 N 1.31515 * 119.99992 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99601 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47446 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46789 * 120.00115 * 12 10 8 15 15 H 1.48500 * 109.47195 * 239.99528 * 12 10 8 16 16 C 1.34779 * 119.99810 * 90.00390 * 6 5 4 17 17 O 1.21691 * 120.00288 * 0.58902 * 16 6 5 18 18 C 1.46675 * 119.99694 * 180.59410 * 16 6 5 19 19 C 1.37873 * 126.23542 * 349.99585 * 18 16 6 20 20 C 1.39836 * 107.08843 * 179.97438 * 19 18 16 21 21 C 1.35451 * 107.86215 * 359.97438 * 20 19 18 22 22 N 1.35533 * 108.87303 * 0.02562 * 21 20 19 23 23 C 1.46508 * 125.67813 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47668 * 300.00233 * 1 2 3 25 25 H 1.09001 * 109.46743 * 60.00061 * 1 2 3 26 26 H 1.08998 * 109.47846 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47239 * 239.99700 * 2 1 3 28 28 H 1.09001 * 109.47211 * 60.00066 * 3 2 1 29 29 H 1.09006 * 109.46857 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47179 * 299.99672 * 3 2 1 31 31 H 1.09008 * 109.47140 * 55.00232 * 4 2 1 32 32 H 1.08988 * 109.47399 * 294.99979 * 4 2 1 33 33 H 1.08999 * 109.46960 * 60.00290 * 5 4 2 34 34 H 1.09001 * 109.47351 * 300.00654 * 5 4 2 35 35 H 1.09001 * 109.46872 * 23.02378 * 7 6 5 36 36 H 1.08994 * 109.47081 * 143.02146 * 7 6 5 37 37 H 0.96997 * 119.99305 * 179.97438 * 11 10 8 38 38 H 1.08000 * 126.45918 * 359.71611 * 19 18 16 39 39 H 1.07995 * 126.07054 * 179.97438 * 20 19 18 40 40 H 1.08004 * 125.56449 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47097 * 274.82842 * 23 22 21 42 42 H 1.09003 * 109.46752 * 34.82667 * 23 22 21 43 43 H 1.08996 * 109.46588 * 154.82059 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 3.5647 -0.8312 1.1882 6 7 4.0529 -1.5223 2.3841 7 6 4.4013 -0.7551 3.5825 8 6 5.8880 -0.5104 3.6077 9 1 6.5008 -0.8220 2.7747 10 6 6.4660 0.1113 4.6943 11 7 5.7198 0.4912 5.7084 12 14 8.3091 0.4140 4.7258 13 1 8.9174 -0.1043 3.4742 14 1 8.5694 1.8718 4.8366 15 1 8.9057 -0.2853 5.8921 16 6 4.1815 -2.8639 2.3817 17 8 3.9024 -3.5002 1.3827 18 6 4.6579 -3.5570 3.5834 19 6 5.1893 -2.9645 4.7092 20 6 5.5078 -3.9919 5.6027 21 6 5.1723 -5.1679 5.0204 22 7 4.6550 -4.9174 3.7930 23 6 4.1721 -5.9266 2.8470 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6052 -1.7199 1.2953 32 1 1.7515 -0.1583 2.1370 33 1 3.9993 0.1674 1.1423 34 1 3.8531 -1.3941 0.3004 35 1 3.8761 0.1999 3.5680 36 1 4.1103 -1.3162 4.4704 37 1 6.1265 0.9282 6.4728 38 1 5.3362 -1.9066 4.8690 39 1 5.9439 -3.8695 6.5831 40 1 5.2968 -6.1456 5.4620 41 1 5.0094 -6.3050 2.2606 42 1 3.7122 -6.7484 3.3959 43 1 3.4355 -5.4773 2.1811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264068934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:03 Heat of formation + Delta-G solvation = 3.550737 kcal Electronic energy + Delta-G solvation = -22625.730944 eV Core-core repulsion = 19478.673758 eV Total energy + Delta-G solvation = -3147.057187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22784 -40.16877 -37.80876 -36.73889 -34.55658 -33.51315 -31.42943 -29.51957 -28.83822 -27.98314 -27.11591 -25.05155 -24.83285 -22.20469 -21.31197 -20.86431 -19.88050 -18.63299 -17.91248 -17.21255 -16.76795 -16.51939 -16.18522 -15.90643 -15.43890 -14.97525 -14.76101 -14.58786 -14.30257 -14.16233 -13.89828 -13.70559 -13.59130 -13.16619 -13.05806 -12.97625 -12.80767 -12.69624 -12.68226 -12.27920 -12.10693 -11.91155 -11.62137 -11.57218 -11.47781 -11.32141 -10.77500 -10.56289 -9.56477 -9.37173 -8.94987 -8.18776 -6.30077 0.70241 1.41088 1.45137 1.54702 1.87272 1.99319 2.39197 2.57930 2.61890 3.11323 3.79673 3.93228 4.00992 4.07672 4.08116 4.29096 4.33721 4.43350 4.56710 4.66279 4.69169 4.74893 4.77463 4.83522 4.90007 4.92105 4.93266 5.04348 5.12596 5.14504 5.22985 5.31806 5.47419 5.51183 5.52728 5.59091 5.73338 5.85717 6.05663 6.11618 6.28951 6.49063 6.58306 6.81623 7.29795 7.40164 8.85371 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.007533 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.183150 B = 3715.886463 C = 5630.854478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.232 3.768 8 C -0.536 4.536 9 H 0.045 0.955 10 C 0.033 3.967 11 N -0.909 5.909 12 Si 0.948 3.052 13 H -0.278 1.278 14 H -0.275 1.275 15 H -0.274 1.274 16 C 0.581 3.419 17 O -0.603 6.603 18 C -0.097 4.097 19 C -0.157 4.157 20 C -0.249 4.249 21 C 0.029 3.971 22 N -0.427 5.427 23 C 0.071 3.929 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.271 0.729 38 H 0.195 0.805 39 H 0.146 0.854 40 H 0.210 0.790 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -5.831 -4.698 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.154 4.154 5 C -0.003 4.003 6 N -0.316 5.316 7 C 0.112 3.888 8 C -0.575 4.575 9 H 0.063 0.937 10 C -0.169 4.169 11 N -0.547 5.547 12 Si 0.773 3.227 13 H -0.203 1.203 14 H -0.200 1.200 15 H -0.200 1.200 16 C 0.373 3.627 17 O -0.489 6.489 18 C -0.208 4.208 19 C -0.182 4.182 20 C -0.274 4.274 21 C -0.107 4.107 22 N -0.101 5.101 23 C -0.069 4.069 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.212 0.788 39 H 0.164 0.836 40 H 0.227 0.773 41 H 0.095 0.905 42 H 0.133 0.867 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.266 -6.262 -5.322 10.335 hybrid contribution 1.156 0.380 0.285 1.250 sum -5.110 -5.881 -5.037 9.278 Atomic orbital electron populations 1.21789 0.93961 1.01721 1.02363 1.21034 0.96694 0.96430 0.96686 1.21887 1.00944 0.95384 1.02259 1.21891 0.94392 1.00028 0.99122 1.21541 0.94769 0.97057 0.86915 1.47914 1.62455 1.05294 1.15986 1.19829 0.94738 0.91148 0.83083 1.21447 0.93308 1.38938 1.03769 0.93673 1.25464 1.01851 0.94720 0.94826 1.69995 1.36902 1.40092 1.07749 0.85653 0.80885 0.78058 0.78066 1.20303 1.19995 1.19955 1.17208 0.77002 0.82512 0.86003 1.90603 1.55953 1.66656 1.35728 1.20032 1.17570 0.84321 0.98878 1.23781 0.98134 1.03967 0.92305 1.21214 1.11541 0.92510 1.02086 1.22541 1.01825 1.01011 0.85336 1.44043 1.46542 1.04843 1.14686 1.22272 1.01105 0.90661 0.92899 0.92758 0.91055 0.93054 0.91055 0.92903 0.93154 0.91051 0.93454 0.92497 0.90085 0.91582 0.95967 0.93265 0.91965 0.78817 0.83649 0.77297 0.90468 0.86719 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 2 C -0.09 -2.28 2.92 -10.79 -0.03 -2.32 16 3 C -0.15 -3.52 8.95 71.98 0.64 -2.87 16 4 C -0.12 -3.81 5.01 30.60 0.15 -3.66 16 5 C 0.12 4.62 5.14 86.38 0.44 5.06 16 6 N -0.59 -26.94 2.48 -830.89 -2.06 -28.99 16 7 C 0.23 11.59 4.70 85.63 0.40 12.00 16 8 C -0.54 -28.44 7.18 25.60 0.18 -28.25 16 9 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 10 C 0.03 1.72 4.71 84.66 0.40 2.12 16 11 N -0.91 -48.85 13.11 21.45 0.28 -48.57 16 12 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 C 0.58 27.42 7.55 86.45 0.65 28.07 16 17 O -0.60 -28.75 14.31 -4.32 -0.06 -28.82 16 18 C -0.10 -4.39 6.74 40.35 0.27 -4.11 16 19 C -0.16 -7.33 8.12 22.57 0.18 -7.14 16 20 C -0.25 -9.60 10.81 22.01 0.24 -9.37 16 21 C 0.03 0.90 11.38 83.48 0.95 1.85 16 22 N -0.43 -15.47 3.16 -534.30 -1.69 -17.16 16 23 C 0.07 1.98 10.63 127.77 1.36 3.34 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.29 6.56 -2.38 -0.02 1.28 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 3.06 6.50 -2.39 -0.02 3.04 16 34 H 0.07 2.60 7.41 -2.39 -0.02 2.58 16 35 H 0.02 1.14 8.02 -2.39 -0.02 1.12 16 36 H 0.05 2.62 4.88 -2.39 -0.01 2.61 16 37 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 38 H 0.20 10.09 2.42 -2.91 -0.01 10.08 16 39 H 0.15 5.04 8.06 -2.91 -0.02 5.01 16 40 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 42 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.08 2.52 6.29 -2.39 -0.02 2.50 16 Total: -1.00 -63.66 342.67 5.99 -57.66 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.98 Total: 29.28 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 6.51 Total: -7.66 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -3.47 Total: -94.72 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.06 Total: -28.82 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -63.66 5.99 -57.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.214 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds