Wall clock time and date at job start Tue Mar 31 2020 00:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47105 * 119.99914 * 2 1 4 4 O 1.21617 * 119.99572 * 127.14356 * 3 2 1 5 5 N 1.34776 * 119.99994 * 307.14227 * 3 2 1 6 6 C 1.46958 * 120.59812 * 4.64678 * 5 3 2 7 7 C 1.53364 * 108.63656 * 235.20659 * 6 5 3 8 8 N 1.46965 * 108.63414 * 310.57157 * 7 6 5 9 9 C 1.36937 * 120.59679 * 235.20380 * 8 7 6 10 10 H 1.08001 * 119.99743 * 32.21131 * 9 8 7 11 11 C 1.38811 * 119.99965 * 212.48809 * 9 8 7 12 12 N 1.31616 * 119.99982 * 13.96520 * 11 9 8 13 13 Si 1.86797 * 119.99972 * 193.96404 * 11 9 8 14 14 H 1.48500 * 109.47002 * 59.99755 * 13 11 9 15 15 H 1.48498 * 109.47214 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47187 * 299.99941 * 13 11 9 17 17 C 1.46965 * 118.80873 * 55.48013 * 8 7 6 18 18 C 1.46962 * 120.58921 * 184.62744 * 5 3 2 19 19 C 1.32994 * 120.00070 * 180.02562 * 2 1 3 20 20 C 1.51449 * 126.34248 * 179.68961 * 19 2 1 21 21 C 1.54279 * 106.84953 * 180.23417 * 20 19 2 22 22 C 1.54980 * 103.66280 * 23.48425 * 21 20 19 23 23 C 1.51847 * 126.33834 * 359.97438 * 19 2 1 24 24 H 1.09001 * 109.47054 * 125.47243 * 1 2 3 25 25 H 1.08999 * 109.46843 * 245.47338 * 1 2 3 26 26 H 1.08996 * 109.46742 * 5.47071 * 1 2 3 27 27 H 1.09001 * 109.61186 * 115.45889 * 6 5 3 28 28 H 1.09007 * 109.60705 * 354.94906 * 6 5 3 29 29 H 1.09005 * 109.60913 * 190.82920 * 7 6 5 30 30 H 1.09003 * 109.61270 * 70.32167 * 7 6 5 31 31 H 0.97004 * 119.99675 * 180.02562 * 12 11 9 32 32 H 1.09005 * 109.60993 * 64.26984 * 17 8 7 33 33 H 1.09000 * 109.60950 * 184.76904 * 17 8 7 34 34 H 1.09003 * 109.60893 * 244.54143 * 18 5 3 35 35 H 1.09005 * 109.61368 * 5.04944 * 18 5 3 36 36 H 1.09000 * 109.98125 * 299.72038 * 20 19 2 37 37 H 1.08999 * 109.98459 * 61.02460 * 20 19 2 38 38 H 1.08996 * 110.79723 * 264.85372 * 21 20 19 39 39 H 1.09005 * 110.42237 * 141.93268 * 21 20 19 40 40 H 1.08996 * 110.83175 * 204.48948 * 22 21 20 41 41 H 1.08998 * 110.83623 * 80.90810 * 22 21 20 42 42 H 1.09002 * 110.43962 * 274.93247 * 23 19 2 43 43 H 1.08996 * 110.44554 * 37.33017 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.0973 1.4825 0.8396 5 7 1.9691 2.2099 -0.9304 6 6 0.8711 2.0150 -1.8875 7 6 1.4299 2.1520 -3.3091 8 7 2.2242 3.3862 -3.3844 9 6 1.9465 4.3372 -4.3298 10 1 0.9300 4.4873 -4.6624 11 6 2.9723 5.1044 -4.8647 12 7 4.2257 4.7471 -4.6813 13 14 2.5737 6.6437 -5.8449 14 1 1.8231 7.5960 -4.9876 15 1 3.8351 7.2787 -6.3040 16 1 1.7459 6.2800 -7.0230 17 6 3.3259 3.5787 -2.4310 18 6 2.7636 3.4440 -1.0057 19 6 2.1720 -1.1518 -0.0005 20 6 3.6772 -1.3190 -0.0072 21 6 3.9586 -2.8360 -0.0111 22 6 2.6647 -3.4467 -0.6069 23 6 1.5626 -2.5426 -0.0006 24 1 -0.3633 -0.5964 -0.8369 25 1 -0.3633 -0.4266 0.9349 26 1 -0.3633 1.0230 -0.0980 27 1 0.1030 2.7704 -1.7219 28 1 0.4440 1.0206 -1.7565 29 1 0.6071 2.2025 -4.0223 30 1 2.0632 1.2948 -3.5375 31 1 4.9424 5.2835 -5.0548 32 1 4.0912 2.8207 -2.5983 33 1 3.7558 4.5715 -2.5642 34 1 2.1303 4.3013 -0.7773 35 1 3.5864 3.3936 -0.2925 36 1 4.0993 -0.8575 -0.8999 37 1 4.1065 -0.8650 0.8859 38 1 4.1233 -3.2016 1.0024 39 1 4.8160 -3.0621 -0.6450 40 1 2.5394 -4.4801 -0.2837 41 1 2.6684 -3.3773 -1.6946 42 1 1.3298 -2.8562 1.0170 43 1 0.6658 -2.5653 -0.6196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267956358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:34 Heat of formation + Delta-G solvation = -3.772615 kcal Electronic energy + Delta-G solvation = -22615.572029 eV Core-core repulsion = 19468.197278 eV Total energy + Delta-G solvation = -3147.374751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.89434 -38.00043 -36.60917 -34.12839 -33.23019 -31.13705 -30.16127 -29.00605 -27.63884 -27.01178 -24.55274 -23.17334 -22.76671 -20.97046 -20.64399 -19.19154 -17.74626 -16.67569 -16.02736 -15.78980 -15.48488 -14.94061 -14.72578 -14.15681 -13.69553 -13.56854 -13.48441 -13.40134 -13.17543 -13.07137 -12.54583 -12.26729 -12.23717 -11.74557 -11.49568 -11.19376 -11.18079 -11.12383 -11.03804 -10.77716 -10.71028 -10.70297 -10.53958 -10.23190 -9.97974 -9.84128 -9.25054 -8.63539 -8.57206 -8.16798 -6.64446 -5.84116 -3.33974 1.75990 3.21738 3.35096 3.41056 3.41643 3.61009 4.39077 4.45093 4.61839 4.89075 4.93000 5.08478 5.26318 5.30800 5.33924 5.35783 5.50393 5.55117 5.68516 5.69047 5.73654 5.78773 5.81652 5.85897 5.91743 6.00195 6.00375 6.11228 6.17593 6.23193 6.35141 6.41995 6.45067 6.56087 6.74342 6.76678 6.93243 7.28026 7.54172 7.73132 7.98591 8.39727 8.64237 9.13544 9.74877 10.34411 11.23162 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.004341 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.107653 B = 6449.220949 C = 6543.973305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.168 4.168 3 C 0.554 3.446 4 O -0.556 6.556 5 N -0.590 5.590 6 C 0.082 3.918 7 C 0.131 3.869 8 N -0.590 5.590 9 C -0.261 4.261 10 H 0.065 0.935 11 C 0.008 3.992 12 N -0.901 5.901 13 Si 0.905 3.095 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.163 3.837 18 C 0.086 3.914 19 C -0.068 4.068 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.092 4.092 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.256 0.744 32 H 0.023 0.977 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 -13.584 8.254 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.171 4.171 3 C 0.343 3.657 4 O -0.436 6.436 5 N -0.321 5.321 6 C -0.042 4.042 7 C 0.004 3.996 8 N -0.313 5.313 9 C -0.390 4.390 10 H 0.083 0.917 11 C -0.192 4.192 12 N -0.544 5.544 13 Si 0.735 3.265 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.208 1.208 17 C 0.036 3.964 18 C -0.038 4.038 19 C -0.070 4.070 20 C -0.137 4.137 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.129 4.129 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.725 -13.350 8.586 16.874 hybrid contribution -0.127 0.902 -0.658 1.124 sum -5.853 -12.448 7.928 15.877 Atomic orbital electron populations 1.20824 0.90549 1.02974 1.01971 1.20711 0.96125 0.92209 1.08006 1.18366 0.82672 0.83645 0.81061 1.90727 1.34689 1.79910 1.38303 1.48004 1.33305 1.19440 1.31394 1.22626 0.88955 1.01162 0.91500 1.21299 0.95363 0.90237 0.92744 1.43956 1.35961 1.16363 1.35035 1.19120 0.92201 1.11814 1.15889 0.91730 1.25192 0.95388 1.00403 0.98180 1.69989 0.98262 1.38411 1.47773 0.86339 0.77092 0.83119 0.79973 1.20872 1.21570 1.20792 1.21221 0.89223 1.02237 0.83711 1.22598 0.95208 0.84472 1.01495 1.22399 0.95969 0.93380 0.95209 1.21252 0.92768 0.96347 1.03369 1.22373 0.97788 0.94940 1.00975 1.22520 0.94633 0.98432 1.00544 1.21465 0.98349 0.91663 1.01423 0.91015 0.91557 0.91259 0.91796 0.89847 0.91621 0.96020 0.93385 0.95882 0.88677 0.92204 0.90274 0.90659 0.89687 0.91464 0.91366 0.91279 0.91097 0.90050 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 7.56 36.01 0.27 -0.92 16 2 C -0.17 -2.47 5.00 -102.84 -0.51 -2.98 16 3 C 0.55 10.36 6.72 -12.66 -0.09 10.27 16 4 O -0.56 -12.02 15.52 5.26 0.08 -11.94 16 5 N -0.59 -11.24 2.95 -173.61 -0.51 -11.75 16 6 C 0.08 1.39 5.37 -3.60 -0.02 1.37 16 7 C 0.13 2.66 6.67 -3.60 -0.02 2.63 16 8 N -0.59 -14.58 2.94 -171.77 -0.51 -15.09 16 9 C -0.26 -6.98 9.55 -15.06 -0.14 -7.13 16 10 H 0.07 1.68 7.87 -52.49 -0.41 1.27 16 11 C 0.01 0.21 4.96 -17.43 -0.09 0.13 16 12 N -0.90 -25.89 11.28 55.49 0.63 -25.27 16 13 Si 0.91 21.28 29.58 -169.99 -5.03 16.25 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.16 3.94 5.49 -3.37 -0.02 3.92 16 18 C 0.09 1.79 6.60 -3.37 -0.02 1.77 16 19 C -0.07 -0.91 6.10 -100.23 -0.61 -1.52 16 20 C -0.10 -1.38 5.59 -26.85 -0.15 -1.53 16 21 C -0.12 -1.28 6.87 -25.02 -0.17 -1.45 16 22 C -0.12 -1.13 6.94 -24.68 -0.17 -1.30 16 23 C -0.09 -0.90 6.10 -26.31 -0.16 -1.06 16 24 H 0.07 0.67 7.44 -51.93 -0.39 0.29 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.80 6.47 -51.93 -0.34 0.47 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.17 4.32 -51.92 -0.22 0.95 16 29 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 2.52 6.19 -51.93 -0.32 2.20 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.66 7.02 -51.93 -0.36 1.29 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.30 7.67 -51.93 -0.40 0.90 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.65 7.45 -51.93 -0.39 0.27 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -31.15 333.37 -9.25 -40.39 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.03 Total: 0.19 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.91 Total: 2.19 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.39 Total: -52.11 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.15 -9.25 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267956358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.621 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds