Wall clock time and date at job start Tue Mar 31 2020 00:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47105 * 119.99914 * 2 1 4 4 O 1.21617 * 119.99572 * 127.14356 * 3 2 1 5 5 N 1.34776 * 119.99994 * 307.14227 * 3 2 1 6 6 C 1.46958 * 120.59812 * 4.64678 * 5 3 2 7 7 C 1.53364 * 108.63656 * 235.20659 * 6 5 3 8 8 N 1.46965 * 108.63414 * 310.57157 * 7 6 5 9 9 C 1.36937 * 120.59679 * 235.20380 * 8 7 6 10 10 H 1.08001 * 119.99743 * 32.21131 * 9 8 7 11 11 C 1.38811 * 119.99965 * 212.48809 * 9 8 7 12 12 N 1.31616 * 119.99982 * 13.96520 * 11 9 8 13 13 Si 1.86797 * 119.99972 * 193.96404 * 11 9 8 14 14 H 1.48500 * 109.47002 * 59.99755 * 13 11 9 15 15 H 1.48498 * 109.47214 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47187 * 299.99941 * 13 11 9 17 17 C 1.46965 * 118.80873 * 55.48013 * 8 7 6 18 18 C 1.46962 * 120.58921 * 184.62744 * 5 3 2 19 19 C 1.32994 * 120.00070 * 180.02562 * 2 1 3 20 20 C 1.51449 * 126.34248 * 179.68961 * 19 2 1 21 21 C 1.54279 * 106.84953 * 180.23417 * 20 19 2 22 22 C 1.54980 * 103.66280 * 23.48425 * 21 20 19 23 23 C 1.51847 * 126.33834 * 359.97438 * 19 2 1 24 24 H 1.09001 * 109.47054 * 125.47243 * 1 2 3 25 25 H 1.08999 * 109.46843 * 245.47338 * 1 2 3 26 26 H 1.08996 * 109.46742 * 5.47071 * 1 2 3 27 27 H 1.09001 * 109.61186 * 115.45889 * 6 5 3 28 28 H 1.09007 * 109.60705 * 354.94906 * 6 5 3 29 29 H 1.09005 * 109.60913 * 190.82920 * 7 6 5 30 30 H 1.09003 * 109.61270 * 70.32167 * 7 6 5 31 31 H 0.97004 * 119.99675 * 180.02562 * 12 11 9 32 32 H 1.09005 * 109.60993 * 64.26984 * 17 8 7 33 33 H 1.09000 * 109.60950 * 184.76904 * 17 8 7 34 34 H 1.09003 * 109.60893 * 244.54143 * 18 5 3 35 35 H 1.09005 * 109.61368 * 5.04944 * 18 5 3 36 36 H 1.09000 * 109.98125 * 299.72038 * 20 19 2 37 37 H 1.08999 * 109.98459 * 61.02460 * 20 19 2 38 38 H 1.08996 * 110.79723 * 264.85372 * 21 20 19 39 39 H 1.09005 * 110.42237 * 141.93268 * 21 20 19 40 40 H 1.08996 * 110.83175 * 204.48948 * 22 21 20 41 41 H 1.08998 * 110.83623 * 80.90810 * 22 21 20 42 42 H 1.09002 * 110.43962 * 274.93247 * 23 19 2 43 43 H 1.08996 * 110.44554 * 37.33017 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.0973 1.4825 0.8396 5 7 1.9691 2.2099 -0.9304 6 6 0.8711 2.0150 -1.8875 7 6 1.4299 2.1520 -3.3091 8 7 2.2242 3.3862 -3.3844 9 6 1.9465 4.3372 -4.3298 10 1 0.9300 4.4873 -4.6624 11 6 2.9723 5.1044 -4.8647 12 7 4.2257 4.7471 -4.6813 13 14 2.5737 6.6437 -5.8449 14 1 1.8231 7.5960 -4.9876 15 1 3.8351 7.2787 -6.3040 16 1 1.7459 6.2800 -7.0230 17 6 3.3259 3.5787 -2.4310 18 6 2.7636 3.4440 -1.0057 19 6 2.1720 -1.1518 -0.0005 20 6 3.6772 -1.3190 -0.0072 21 6 3.9586 -2.8360 -0.0111 22 6 2.6647 -3.4467 -0.6069 23 6 1.5626 -2.5426 -0.0006 24 1 -0.3633 -0.5964 -0.8369 25 1 -0.3633 -0.4266 0.9349 26 1 -0.3633 1.0230 -0.0980 27 1 0.1030 2.7704 -1.7219 28 1 0.4440 1.0206 -1.7565 29 1 0.6071 2.2025 -4.0223 30 1 2.0632 1.2948 -3.5375 31 1 4.9424 5.2835 -5.0548 32 1 4.0912 2.8207 -2.5983 33 1 3.7558 4.5715 -2.5642 34 1 2.1303 4.3013 -0.7773 35 1 3.5864 3.3936 -0.2925 36 1 4.0993 -0.8575 -0.8999 37 1 4.1065 -0.8650 0.8859 38 1 4.1233 -3.2016 1.0024 39 1 4.8160 -3.0621 -0.6450 40 1 2.5394 -4.4801 -0.2837 41 1 2.6684 -3.3773 -1.6946 42 1 1.3298 -2.8562 1.0170 43 1 0.6658 -2.5653 -0.6196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267956358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:34 Heat of formation + Delta-G solvation = -21.634140 kcal Electronic energy + Delta-G solvation = -22616.346563 eV Core-core repulsion = 19468.197278 eV Total energy + Delta-G solvation = -3148.149285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31749 -39.13060 -38.23506 -35.77750 -34.48179 -33.03966 -31.84068 -29.91580 -28.80724 -28.51206 -26.10065 -24.71030 -24.36485 -22.43411 -21.57354 -20.73591 -19.23471 -18.29510 -17.44902 -17.10441 -16.77238 -16.42949 -16.28229 -15.57507 -15.44719 -15.22809 -15.05649 -14.68592 -14.35612 -14.13834 -13.86014 -13.56822 -13.24919 -13.16491 -12.95624 -12.75039 -12.55317 -12.52943 -12.29336 -12.12342 -12.06170 -11.99456 -11.89507 -11.87794 -11.66343 -11.49575 -10.71586 -10.61959 -9.88796 -9.63422 -8.63942 -7.90045 -5.44268 0.62355 1.47736 1.50195 1.56905 1.78834 2.16596 2.50013 3.25799 3.37278 3.57776 3.72301 3.81348 4.11434 4.17806 4.21470 4.23545 4.36965 4.37117 4.46964 4.49618 4.60109 4.69242 4.74005 4.77554 4.82493 4.87862 4.90558 4.98406 5.01953 5.03374 5.10939 5.17973 5.20069 5.20187 5.40039 5.41763 5.48612 5.58570 5.63957 5.75671 6.35218 6.50877 7.07629 7.14939 7.75465 8.31930 9.15125 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.004341 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.107653 B = 6449.220949 C = 6543.973305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.188 4.188 3 C 0.548 3.452 4 O -0.595 6.595 5 N -0.597 5.597 6 C 0.093 3.907 7 C 0.127 3.873 8 N -0.607 5.607 9 C -0.268 4.268 10 H 0.075 0.925 11 C -0.047 4.047 12 N -0.938 5.938 13 Si 0.972 3.028 14 H -0.276 1.276 15 H -0.297 1.297 16 H -0.272 1.272 17 C 0.176 3.824 18 C 0.100 3.900 19 C -0.065 4.065 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.085 4.085 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.010 0.990 31 H 0.251 0.749 32 H -0.010 1.010 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -15.561 8.441 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.191 4.191 3 C 0.339 3.661 4 O -0.478 6.478 5 N -0.327 5.327 6 C -0.030 4.030 7 C 0.001 3.999 8 N -0.331 5.331 9 C -0.398 4.398 10 H 0.093 0.907 11 C -0.242 4.242 12 N -0.583 5.583 13 Si 0.800 3.200 14 H -0.201 1.201 15 H -0.224 1.224 16 H -0.197 1.197 17 C 0.049 3.951 18 C -0.024 4.024 19 C -0.066 4.066 20 C -0.146 4.146 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.122 4.122 24 H 0.116 0.884 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.100 0.900 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.008 0.992 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.733 -15.355 8.773 19.723 hybrid contribution 0.874 1.463 -0.692 1.839 sum -7.860 -13.891 8.081 17.890 Atomic orbital electron populations 1.20879 0.87402 1.03470 1.04121 1.20790 0.98042 0.90107 1.10159 1.19168 0.82213 0.84666 0.80050 1.90698 1.36510 1.80758 1.39816 1.48102 1.33616 1.18891 1.32137 1.22661 0.88102 1.03775 0.88444 1.21493 0.95033 0.87850 0.95564 1.44203 1.36179 1.17822 1.34884 1.19525 0.92612 1.12135 1.15539 0.90748 1.25992 0.95191 1.03385 0.99674 1.70163 0.99190 1.39609 1.49353 0.85279 0.76513 0.79464 0.78778 1.20140 1.22357 1.19709 1.20882 0.88891 0.99407 0.85918 1.22206 0.95425 0.86106 0.98710 1.22801 0.95630 0.95124 0.93088 1.21309 0.93661 0.98815 1.00792 1.22376 0.99035 0.92156 1.02091 1.22545 0.93145 0.99664 1.00305 1.21560 0.98964 0.88666 1.02997 0.88390 0.89663 0.91677 0.90594 0.86106 0.90008 0.97240 0.94009 0.99221 0.91532 0.91501 0.91108 0.93541 0.92154 0.90181 0.91144 0.88573 0.91398 0.88193 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 7.56 71.24 0.54 -1.35 16 2 C -0.19 -5.20 5.00 -18.70 -0.09 -5.29 16 3 C 0.55 20.57 6.72 86.57 0.58 21.15 16 4 O -0.60 -26.64 15.52 -4.08 -0.06 -26.70 16 5 N -0.60 -22.70 2.95 -821.44 -2.42 -25.12 16 6 C 0.09 2.99 5.37 86.41 0.46 3.45 16 7 C 0.13 5.05 6.67 86.41 0.58 5.62 16 8 N -0.61 -30.43 2.94 -697.35 -2.05 -32.48 16 9 C -0.27 -14.40 9.55 84.03 0.80 -13.60 16 10 H 0.07 3.78 7.87 -2.91 -0.02 3.76 16 11 C -0.05 -2.58 4.96 84.86 0.42 -2.15 16 12 N -0.94 -55.87 11.28 21.65 0.24 -55.63 16 13 Si 0.97 44.12 29.58 68.60 2.03 46.15 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 C 0.18 8.95 5.49 86.56 0.48 9.42 16 18 C 0.10 4.31 6.60 86.56 0.57 4.88 16 19 C -0.07 -1.62 6.10 -17.01 -0.10 -1.73 16 20 C -0.11 -3.03 5.59 30.52 0.17 -2.86 16 21 C -0.12 -2.28 6.87 31.71 0.22 -2.07 16 22 C -0.12 -1.76 6.94 31.92 0.22 -1.54 16 23 C -0.09 -1.32 6.10 30.87 0.19 -1.14 16 24 H 0.10 1.31 7.44 -2.39 -0.02 1.29 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.27 6.47 -2.39 -0.02 1.25 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.12 2.99 4.32 -2.38 -0.01 2.98 16 29 H 0.08 2.97 7.93 -2.38 -0.02 2.95 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 32 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 33 H 0.07 3.74 6.19 -2.39 -0.01 3.73 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.07 3.14 7.02 -2.38 -0.02 3.12 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.95 7.67 -2.39 -0.02 1.93 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.16 7.45 -2.39 -0.02 1.14 16 Total: -1.00 -70.84 333.37 3.75 -67.09 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.98 Total: 13.89 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.03 Total: 12.81 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.23 Total: -113.23 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.70 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.84 3.75 -67.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267956358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.457 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds