Wall clock time and date at job start Tue Mar 31 2020 00:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.33409 * 120.00308 * 2 1 4 4 C 1.46352 * 119.99540 * 359.97438 * 3 2 1 5 5 C 1.35174 * 119.99800 * 179.72930 * 4 3 2 6 6 C 1.46258 * 119.99921 * 179.97438 * 5 4 3 7 7 O 1.21722 * 120.00250 * 5.24207 * 6 5 4 8 8 N 1.34779 * 120.00157 * 185.23194 * 6 5 4 9 9 C 1.46964 * 120.59100 * 4.94595 * 8 6 5 10 10 C 1.53812 * 108.40127 * 124.75345 * 9 8 6 11 11 N 1.46971 * 108.57745 * 49.63398 * 10 9 8 12 12 C 1.36935 * 120.59104 * 124.66988 * 11 10 9 13 13 H 1.08009 * 119.99834 * 211.98412 * 12 11 10 14 14 C 1.38810 * 120.00588 * 31.98321 * 12 11 10 15 15 N 1.31629 * 119.99605 * 16.22336 * 14 12 11 16 16 Si 1.86795 * 120.00614 * 196.22388 * 14 12 11 17 17 H 1.48501 * 109.46762 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47384 * 119.99932 * 16 14 12 19 19 H 1.48498 * 109.47294 * 240.00259 * 16 14 12 20 20 C 1.46962 * 118.81357 * 304.64894 * 11 10 9 21 21 C 1.46961 * 120.59425 * 185.21827 * 8 6 5 22 22 C 1.50694 * 120.00458 * 179.72389 * 3 2 1 23 23 C 1.53004 * 109.47056 * 265.27168 * 22 3 2 24 24 H 1.09002 * 109.47506 * 300.00877 * 1 2 3 25 25 H 1.09010 * 109.47019 * 60.00469 * 1 2 3 26 26 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00006 * 179.97438 * 2 1 3 28 28 H 1.07994 * 120.00110 * 359.73075 * 4 3 2 29 29 H 1.08003 * 120.00268 * 0.02562 * 5 4 3 30 30 H 1.09000 * 109.60610 * 244.53748 * 9 8 6 31 31 H 1.08994 * 109.61356 * 5.04358 * 9 8 6 32 32 H 1.08997 * 109.74360 * 289.84555 * 10 9 8 33 33 H 1.08997 * 109.53263 * 169.29811 * 10 9 8 34 34 H 0.96994 * 120.00056 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.60684 * 295.48314 * 20 11 10 36 36 H 1.08999 * 109.74975 * 175.05456 * 20 11 10 37 37 H 1.08999 * 109.61546 * 354.94997 * 21 8 6 38 38 H 1.09007 * 109.61131 * 115.46588 * 21 8 6 39 39 H 1.09002 * 109.47026 * 25.26764 * 22 3 2 40 40 H 1.08999 * 109.47342 * 145.27085 * 22 3 2 41 41 H 1.08994 * 109.47666 * 179.97438 * 23 22 3 42 42 H 1.09002 * 109.46873 * 299.99689 * 23 22 3 43 43 H 1.08999 * 109.47113 * 59.99777 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 1.4422 2.4227 -0.0006 5 6 2.1181 3.5934 0.0050 6 6 1.3868 4.8600 0.0038 7 8 0.1729 4.8621 0.0942 8 7 2.0569 6.0250 -0.0971 9 6 3.5103 6.0354 -0.3152 10 6 3.8067 6.8703 -1.5725 11 7 3.0980 8.1530 -1.4605 12 6 3.7790 9.3367 -1.5631 13 1 3.4454 10.2014 -1.0085 14 6 4.8979 9.4252 -2.3798 15 7 5.1241 8.5004 -3.2887 16 14 6.0827 10.8567 -2.1890 17 1 5.6065 11.7521 -1.1043 18 1 7.4322 10.3401 -1.8471 19 1 6.1514 11.6156 -3.4636 20 6 1.6456 8.1427 -1.2369 21 6 1.3483 7.3076 0.0148 22 6 3.6809 1.1554 0.0063 23 6 4.1849 1.2778 1.4457 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 2.0469 -0.9353 0.0004 28 1 0.3623 2.4227 -0.0054 29 1 3.1981 3.5934 0.0094 30 1 4.0064 6.4797 0.5477 31 1 3.8659 5.0152 -0.4594 32 1 3.4609 6.3375 -2.4583 33 1 4.8792 7.0501 -1.6461 34 1 5.9061 8.5620 -3.8592 35 1 1.1460 7.7004 -2.0988 36 1 1.2882 9.1619 -1.0901 37 1 0.2758 7.1279 0.0885 38 1 1.6942 7.8406 0.9006 39 1 4.0461 0.2250 -0.4286 40 1 4.0467 1.9985 -0.5797 41 1 5.2748 1.2773 1.4504 42 1 3.8198 2.2082 1.8806 43 1 3.8191 0.4346 2.0317 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268850508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:02 Heat of formation + Delta-G solvation = 13.497164 kcal Electronic energy + Delta-G solvation = -21853.655880 eV Core-core repulsion = 18707.030003 eV Total energy + Delta-G solvation = -3146.625877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.61342 -37.56485 -36.64296 -33.82607 -32.35716 -32.02635 -31.09400 -30.10910 -27.35926 -26.67892 -24.18882 -23.23965 -22.74465 -22.26814 -20.24593 -18.53118 -17.97210 -17.09524 -16.07887 -15.80639 -15.11836 -14.73362 -14.64078 -14.51577 -13.77417 -13.69398 -13.48152 -13.39380 -13.23330 -13.02502 -12.92326 -12.44493 -12.37967 -12.26805 -11.65137 -11.51229 -11.34535 -11.04341 -10.87434 -10.80060 -10.70932 -10.48011 -10.35270 -10.24889 -10.06701 -9.83771 -9.36409 -8.60369 -8.38941 -8.10762 -6.66954 -5.87198 -3.34980 0.82713 2.57899 3.31974 3.40505 3.42600 3.51283 3.72937 4.43016 4.57198 4.64940 4.98442 5.04907 5.11042 5.24388 5.26916 5.30153 5.37363 5.40801 5.49382 5.55509 5.78367 5.79623 5.83836 5.86072 5.87542 5.95792 6.09027 6.11023 6.15176 6.21502 6.35535 6.35809 6.45061 6.55410 6.75386 6.82497 6.95022 7.21740 7.41089 7.72923 7.95457 8.37025 8.60756 9.11128 9.72732 10.32537 11.20485 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.003935 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.514667 B = 7114.474181 C = 7812.814291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.133 4.133 3 C -0.113 4.113 4 C -0.044 4.044 5 C -0.198 4.198 6 C 0.539 3.461 7 O -0.566 6.566 8 N -0.591 5.591 9 C 0.078 3.922 10 C 0.161 3.839 11 N -0.591 5.591 12 C -0.258 4.258 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.900 5.900 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.132 3.868 21 C 0.095 3.905 22 C -0.090 4.090 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.094 0.906 34 H 0.255 0.745 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -15.262 7.585 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C -0.113 4.113 4 C -0.063 4.063 5 C -0.218 4.218 6 C 0.330 3.670 7 O -0.448 6.448 8 N -0.322 5.322 9 C -0.046 4.046 10 C 0.034 3.966 11 N -0.313 5.313 12 C -0.388 4.388 13 H 0.084 0.916 14 C -0.193 4.193 15 N -0.544 5.544 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.005 3.995 21 C -0.029 4.029 22 C -0.127 4.127 23 C -0.206 4.206 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.504 -15.194 7.501 17.303 hybrid contribution 0.867 0.725 -0.074 1.133 sum -2.637 -14.469 7.427 16.476 Atomic orbital electron populations 1.20918 0.92938 1.02303 1.02592 1.23463 0.96140 0.96989 0.98498 1.20570 0.95292 0.92716 1.02719 1.22405 0.99982 0.91012 0.92948 1.23243 1.00689 0.92415 1.05478 1.18326 0.87135 0.84466 0.77102 1.90737 1.13852 1.87705 1.52544 1.47948 1.09243 1.05636 1.69334 1.22842 0.78996 1.00960 1.01773 1.21192 0.99321 0.85082 0.90989 1.43954 1.00741 1.02337 1.84304 1.19212 1.08795 0.89867 1.20898 0.91608 1.25171 1.00981 0.97928 0.95182 1.70034 1.28262 1.35746 1.20313 0.86212 0.80973 0.81963 0.77545 1.20139 1.21456 1.21628 1.21302 0.86942 0.97650 0.93631 1.22211 0.97035 0.83580 1.00077 1.20580 0.91322 1.02892 0.97950 1.21761 1.00770 1.02254 0.95768 0.91219 0.91119 0.92028 0.86696 0.85191 0.85054 0.91802 0.90853 0.95660 0.88837 0.93534 0.95867 0.91526 0.89965 0.91954 0.91152 0.90658 0.92343 0.92298 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.75 36.00 0.32 -0.80 16 2 C -0.13 -1.22 9.96 -36.00 -0.36 -1.58 16 3 C -0.11 -1.22 5.23 -103.05 -0.54 -1.75 16 4 C -0.04 -0.58 8.88 -37.41 -0.33 -0.91 16 5 C -0.20 -2.93 8.53 -37.45 -0.32 -3.25 16 6 C 0.54 9.97 7.61 -13.04 -0.10 9.87 16 7 O -0.57 -11.89 15.66 5.17 0.08 -11.81 16 8 N -0.59 -11.15 2.94 -173.91 -0.51 -11.67 16 9 C 0.08 1.43 6.51 -3.37 -0.02 1.41 16 10 C 0.16 3.68 5.50 -3.36 -0.02 3.66 16 11 N -0.59 -14.57 2.95 -171.76 -0.51 -15.08 16 12 C -0.26 -6.90 9.54 -15.06 -0.14 -7.05 16 13 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 14 C 0.01 0.18 4.90 -17.43 -0.09 0.10 16 15 N -0.90 -25.39 11.41 55.49 0.63 -24.76 16 16 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 C 0.13 2.83 6.67 -3.59 -0.02 2.81 16 21 C 0.10 1.81 6.60 -3.60 -0.02 1.79 16 22 C -0.09 -0.86 5.43 -27.88 -0.15 -1.01 16 23 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16 24 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 25 H 0.07 0.64 7.93 -51.92 -0.41 0.23 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.12 0.86 8.03 -52.49 -0.42 0.44 16 28 H 0.13 1.81 6.22 -52.49 -0.33 1.48 16 29 H 0.13 1.72 4.25 -52.48 -0.22 1.50 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.12 5.39 -51.93 -0.28 0.84 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.32 6.25 -51.93 -0.32 2.00 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.36 7.94 -51.93 -0.41 0.95 16 37 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.58 8.02 -51.93 -0.42 0.16 16 40 H 0.07 0.76 6.70 -51.93 -0.35 0.41 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -30.72 344.77 -8.44 -39.16 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.87 Total: 0.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.43 Total: 2.33 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.38 Total: -51.50 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.72 -8.44 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268850508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.657 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds