Wall clock time and date at job start Tue Mar 31 2020 00:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46918 * 2 1 4 4 C 1.53005 * 109.47083 * 178.88642 * 3 2 1 5 5 C 1.53003 * 109.47549 * 298.88662 * 3 2 1 6 6 N 1.46503 * 109.47260 * 58.88710 * 3 2 1 7 7 C 1.46499 * 119.99966 * 231.73569 * 6 3 2 8 8 C 1.50704 * 109.46857 * 91.31311 * 7 6 3 9 9 H 1.08004 * 120.00032 * 4.73330 * 8 7 6 10 10 C 1.37877 * 119.99942 * 184.74131 * 8 7 6 11 11 N 1.31515 * 119.99813 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00118 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47064 * 90.00663 * 12 10 8 14 14 H 1.48499 * 109.47109 * 210.00591 * 12 10 8 15 15 H 1.48503 * 109.47020 * 330.00329 * 12 10 8 16 16 C 1.34773 * 120.00133 * 51.73543 * 6 3 2 17 17 O 1.21630 * 119.99882 * 6.29338 * 16 6 3 18 18 C 1.47256 * 120.00240 * 186.28886 * 16 6 3 19 19 C 1.46691 * 126.94461 * 7.93267 * 18 16 6 20 20 C 1.34487 * 106.33430 * 179.97438 * 19 18 16 21 21 N 1.36444 * 108.85652 * 0.02562 * 20 19 18 22 22 C 1.46501 * 124.84732 * 179.97438 * 21 20 19 23 23 C 1.34661 * 110.29760 * 359.75003 * 21 20 19 24 24 H 1.09001 * 109.46910 * 173.27035 * 1 2 3 25 25 H 1.09008 * 109.46891 * 293.26594 * 1 2 3 26 26 H 1.09003 * 109.47073 * 53.26631 * 1 2 3 27 27 H 1.08997 * 109.46900 * 240.00257 * 2 1 3 28 28 H 1.09007 * 109.46990 * 120.00044 * 2 1 3 29 29 H 1.09001 * 109.46839 * 176.67544 * 4 3 2 30 30 H 1.09004 * 109.46635 * 296.66912 * 4 3 2 31 31 H 1.08990 * 109.47152 * 56.67028 * 4 3 2 32 32 H 1.08999 * 109.46791 * 300.00038 * 5 3 2 33 33 H 1.08994 * 109.47063 * 59.99793 * 5 3 2 34 34 H 1.08997 * 109.47296 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47106 * 211.30606 * 7 6 3 36 36 H 1.08997 * 109.47302 * 331.31219 * 7 6 3 37 37 H 0.97008 * 119.99940 * 179.97438 * 11 10 8 38 38 H 1.08001 * 126.83091 * 359.95750 * 19 18 16 39 39 H 1.08006 * 125.56643 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46908 * 90.02771 * 22 21 20 41 41 H 1.08999 * 109.47166 * 210.02365 * 22 21 20 42 42 H 1.08997 * 109.47512 * 330.02746 * 22 21 20 43 43 H 1.08001 * 125.79609 * 180.29880 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4426 0.0280 5 6 1.5530 2.1557 -1.2630 6 7 1.5299 2.1408 1.1825 7 6 0.8452 3.4275 1.0348 8 6 -0.6355 3.1937 0.8802 9 1 -1.0365 2.1947 0.9672 10 6 -1.4783 4.2552 0.6274 11 7 -2.7706 4.0513 0.4929 12 14 -0.7849 5.9833 0.4773 13 1 -0.4271 6.2518 -0.9387 14 1 -1.8039 6.9662 0.9253 15 1 0.4275 6.1055 1.3261 16 6 1.6904 1.5995 2.4063 17 8 2.3568 0.5912 2.5426 18 6 1.0592 2.2289 3.5784 19 6 0.1019 3.3404 3.5737 20 6 -0.2042 3.5814 4.8609 21 7 0.4878 2.7091 5.6495 22 6 0.4153 2.6645 7.1121 23 6 1.2431 1.8919 4.8911 24 1 -0.3633 -1.0206 -0.1204 25 1 -0.3633 0.4060 0.9442 26 1 -0.3633 0.6147 -0.8236 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9341 2.4682 -0.0315 30 1 3.9161 0.9873 0.9559 31 1 3.9487 0.8725 -0.8200 32 1 1.9326 1.6361 -2.1428 33 1 0.4633 2.1556 -1.2830 34 1 1.9167 3.1832 -1.2632 35 1 1.0261 4.0389 1.9189 36 1 1.2258 3.9425 0.1528 37 1 -3.3636 4.7982 0.3154 38 1 -0.2808 3.8616 2.7087 39 1 -0.8864 4.3412 5.2128 40 1 -0.3794 1.9832 7.4158 41 1 1.3667 2.3143 7.5125 42 1 0.2048 3.6626 7.4961 43 1 1.8859 1.1052 5.2574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276280402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:18 Heat of formation + Delta-G solvation = 36.904845 kcal Electronic energy + Delta-G solvation = -23558.045700 eV Core-core repulsion = 20412.434856 eV Total energy + Delta-G solvation = -3145.610844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65684 -39.22420 -36.02291 -34.00195 -32.20596 -31.64295 -29.76772 -28.60416 -27.99324 -26.44305 -26.06138 -22.92420 -22.47801 -21.54575 -19.96061 -18.89471 -17.72104 -16.99663 -16.39476 -15.29597 -15.15970 -14.95496 -14.49562 -13.91259 -13.82861 -13.60447 -13.11000 -12.91887 -12.65133 -12.46935 -12.41608 -12.34801 -11.87176 -11.69259 -11.63722 -11.32557 -11.21939 -11.06259 -10.84732 -10.80896 -10.47101 -10.19666 -10.00984 -9.97239 -9.79977 -9.36284 -8.69882 -8.58344 -7.84251 -7.71088 -7.36593 -6.15111 -4.10837 2.47486 3.19329 3.25799 3.29629 3.32408 3.34684 4.11308 4.30744 4.46499 4.91258 5.15116 5.23627 5.37156 5.40856 5.45391 5.63236 5.65508 5.69429 5.99887 6.05533 6.14046 6.23866 6.31215 6.33220 6.34937 6.40042 6.62242 6.67466 6.68124 6.75766 6.80561 6.93710 7.01388 7.03554 7.13401 7.28669 7.52781 7.57431 7.71796 7.80403 7.89321 8.35877 8.63677 8.99187 9.28788 9.44566 10.96436 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.010046 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.098638 B = 2786.514087 C = 4351.476449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.181 3.819 4 C -0.158 4.158 5 C -0.154 4.154 6 N -0.576 5.576 7 C 0.188 3.812 8 C -0.521 4.521 9 H 0.090 0.910 10 C 0.074 3.926 11 N -0.887 5.887 12 Si 0.856 3.144 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.261 1.261 16 C 0.595 3.405 17 O -0.581 6.581 18 C -0.223 4.223 19 C -0.145 4.145 20 C -0.057 4.057 21 N -0.454 5.454 22 C 0.074 3.926 23 C 0.050 3.950 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.200 0.800 39 H 0.157 0.843 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 -1.006 6.162 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.096 3.904 4 C -0.216 4.216 5 C -0.212 4.212 6 N -0.305 5.305 7 C 0.067 3.933 8 C -0.559 4.559 9 H 0.108 0.892 10 C -0.129 4.129 11 N -0.525 5.525 12 Si 0.683 3.317 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.185 1.185 16 C 0.387 3.613 17 O -0.465 6.465 18 C -0.234 4.234 19 C -0.168 4.168 20 C -0.182 4.182 21 N -0.132 5.132 22 C -0.068 4.068 23 C -0.084 4.084 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.216 0.784 39 H 0.174 0.826 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.072 -1.374 6.516 9.714 hybrid contribution -0.011 1.085 -0.052 1.086 sum 7.061 -0.289 6.464 9.577 Atomic orbital electron populations 1.21808 0.95113 0.99649 1.03556 1.21917 0.96853 0.95968 1.02362 1.20183 0.92291 0.92234 0.85675 1.22204 0.95848 1.01150 1.02412 1.22196 1.04290 0.99595 0.95080 1.47722 1.55926 1.22383 1.04474 1.20386 0.93236 0.81724 0.97928 1.21502 0.89423 0.97068 1.47918 0.89234 1.24874 0.94759 0.98310 0.94932 1.69890 1.02775 1.31675 1.48176 0.87157 0.79629 0.85586 0.79367 1.19972 1.21002 1.18534 1.17283 0.78912 0.82712 0.82427 1.90575 1.42954 1.26733 1.86219 1.20438 1.07100 1.03762 0.92077 1.24133 0.97338 0.97838 0.97449 1.21876 1.04704 1.00519 0.91063 1.43535 1.35712 1.27959 1.06006 1.21947 1.03026 1.03367 0.78442 1.21558 0.99047 0.97333 0.90475 0.94658 0.91730 0.92104 0.92848 0.89689 0.93319 0.91152 0.92818 0.92969 0.89378 0.92563 0.93479 0.95266 0.92521 0.78427 0.82603 0.91430 0.90402 0.90235 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.96 37.16 0.33 -2.53 16 2 C -0.13 -2.49 4.63 -26.73 -0.12 -2.61 16 3 C 0.18 3.43 0.72 -131.82 -0.09 3.33 16 4 C -0.16 -2.70 8.55 37.16 0.32 -2.38 16 5 C -0.15 -2.77 7.07 37.16 0.26 -2.51 16 6 N -0.58 -12.22 1.79 -161.49 -0.29 -12.51 16 7 C 0.19 4.19 3.10 -5.19 -0.02 4.18 16 8 C -0.52 -12.96 6.51 -34.44 -0.22 -13.18 16 9 H 0.09 2.50 5.87 -52.48 -0.31 2.19 16 10 C 0.07 1.92 5.07 -17.82 -0.09 1.83 16 11 N -0.89 -24.75 13.96 55.43 0.77 -23.98 16 12 Si 0.86 19.26 26.99 -169.99 -4.59 14.68 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.26 -5.61 6.68 56.52 0.38 -5.23 16 16 C 0.60 13.15 6.65 -12.60 -0.08 13.07 16 17 O -0.58 -13.30 13.18 5.25 0.07 -13.23 16 18 C -0.22 -4.69 6.04 -103.35 -0.62 -5.32 16 19 C -0.15 -3.06 8.27 -37.50 -0.31 -3.37 16 20 C -0.06 -1.02 11.34 -16.83 -0.19 -1.21 16 21 N -0.45 -7.09 3.09 -124.53 -0.38 -7.47 16 22 C 0.07 0.75 11.03 59.85 0.66 1.41 16 23 C 0.05 0.90 11.13 -16.84 -0.19 0.71 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.48 5.87 -51.92 -0.30 1.17 16 26 H 0.06 1.23 6.13 -51.93 -0.32 0.91 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.75 5.85 -51.92 -0.30 1.44 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.31 6.51 -51.93 -0.34 0.98 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.78 5.31 -51.93 -0.28 1.51 16 34 H 0.06 1.00 6.58 -51.93 -0.34 0.66 16 35 H 0.05 1.08 4.33 -51.93 -0.22 0.85 16 36 H 0.03 0.64 4.99 -51.93 -0.26 0.38 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.20 4.59 2.82 -52.49 -0.15 4.44 16 39 H 0.16 2.36 8.06 -52.48 -0.42 1.93 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.64 8.13 -51.93 -0.42 0.21 16 42 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 43 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -29.48 322.76 -6.13 -35.61 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.21 Total: 10.62 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.37 Total: -8.59 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.10 Total: -43.96 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.59 Total: 14.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.48 -6.13 -35.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276280402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.519 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds