Wall clock time and date at job start Tue Mar 31 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46918 * 2 1 4 4 C 1.53005 * 109.47083 * 178.88642 * 3 2 1 5 5 C 1.53003 * 109.47549 * 298.88662 * 3 2 1 6 6 N 1.46503 * 109.47260 * 58.88710 * 3 2 1 7 7 C 1.46499 * 119.99966 * 231.73569 * 6 3 2 8 8 C 1.50704 * 109.46857 * 91.31311 * 7 6 3 9 9 H 1.08004 * 120.00032 * 4.73330 * 8 7 6 10 10 C 1.37877 * 119.99942 * 184.74131 * 8 7 6 11 11 N 1.31515 * 119.99813 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00118 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47064 * 90.00663 * 12 10 8 14 14 H 1.48499 * 109.47109 * 210.00591 * 12 10 8 15 15 H 1.48503 * 109.47020 * 330.00329 * 12 10 8 16 16 C 1.34773 * 120.00133 * 51.73543 * 6 3 2 17 17 O 1.21630 * 119.99882 * 6.29338 * 16 6 3 18 18 C 1.47256 * 120.00240 * 186.28886 * 16 6 3 19 19 C 1.46691 * 126.94461 * 7.93267 * 18 16 6 20 20 C 1.34487 * 106.33430 * 179.97438 * 19 18 16 21 21 N 1.36444 * 108.85652 * 0.02562 * 20 19 18 22 22 C 1.46501 * 124.84732 * 179.97438 * 21 20 19 23 23 C 1.34661 * 110.29760 * 359.75003 * 21 20 19 24 24 H 1.09001 * 109.46910 * 173.27035 * 1 2 3 25 25 H 1.09008 * 109.46891 * 293.26594 * 1 2 3 26 26 H 1.09003 * 109.47073 * 53.26631 * 1 2 3 27 27 H 1.08997 * 109.46900 * 240.00257 * 2 1 3 28 28 H 1.09007 * 109.46990 * 120.00044 * 2 1 3 29 29 H 1.09001 * 109.46839 * 176.67544 * 4 3 2 30 30 H 1.09004 * 109.46635 * 296.66912 * 4 3 2 31 31 H 1.08990 * 109.47152 * 56.67028 * 4 3 2 32 32 H 1.08999 * 109.46791 * 300.00038 * 5 3 2 33 33 H 1.08994 * 109.47063 * 59.99793 * 5 3 2 34 34 H 1.08997 * 109.47296 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47106 * 211.30606 * 7 6 3 36 36 H 1.08997 * 109.47302 * 331.31219 * 7 6 3 37 37 H 0.97008 * 119.99940 * 179.97438 * 11 10 8 38 38 H 1.08001 * 126.83091 * 359.95750 * 19 18 16 39 39 H 1.08006 * 125.56643 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46908 * 90.02771 * 22 21 20 41 41 H 1.08999 * 109.47166 * 210.02365 * 22 21 20 42 42 H 1.08997 * 109.47512 * 330.02746 * 22 21 20 43 43 H 1.08001 * 125.79609 * 180.29880 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4426 0.0280 5 6 1.5530 2.1557 -1.2630 6 7 1.5299 2.1408 1.1825 7 6 0.8452 3.4275 1.0348 8 6 -0.6355 3.1937 0.8802 9 1 -1.0365 2.1947 0.9672 10 6 -1.4783 4.2552 0.6274 11 7 -2.7706 4.0513 0.4929 12 14 -0.7849 5.9833 0.4773 13 1 -0.4271 6.2518 -0.9387 14 1 -1.8039 6.9662 0.9253 15 1 0.4275 6.1055 1.3261 16 6 1.6904 1.5995 2.4063 17 8 2.3568 0.5912 2.5426 18 6 1.0592 2.2289 3.5784 19 6 0.1019 3.3404 3.5737 20 6 -0.2042 3.5814 4.8609 21 7 0.4878 2.7091 5.6495 22 6 0.4153 2.6645 7.1121 23 6 1.2431 1.8919 4.8911 24 1 -0.3633 -1.0206 -0.1204 25 1 -0.3633 0.4060 0.9442 26 1 -0.3633 0.6147 -0.8236 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9341 2.4682 -0.0315 30 1 3.9161 0.9873 0.9559 31 1 3.9487 0.8725 -0.8200 32 1 1.9326 1.6361 -2.1428 33 1 0.4633 2.1556 -1.2830 34 1 1.9167 3.1832 -1.2632 35 1 1.0261 4.0389 1.9189 36 1 1.2258 3.9425 0.1528 37 1 -3.3636 4.7982 0.3154 38 1 -0.2808 3.8616 2.7087 39 1 -0.8864 4.3412 5.2128 40 1 -0.3794 1.9832 7.4158 41 1 1.3667 2.3143 7.5125 42 1 0.2048 3.6626 7.4961 43 1 1.8859 1.1052 5.2574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276280402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:17 Heat of formation + Delta-G solvation = 20.383893 kcal Electronic energy + Delta-G solvation = -23558.762102 eV Core-core repulsion = 20412.434856 eV Total energy + Delta-G solvation = -3146.327246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08100 -40.76786 -37.65696 -35.70277 -33.98630 -33.00818 -31.30678 -30.20435 -29.59822 -27.89815 -27.27265 -24.50377 -24.21291 -23.12833 -21.42607 -20.31516 -19.24997 -18.94042 -17.92960 -16.81414 -16.71623 -16.32818 -15.97076 -15.61750 -15.38314 -15.03673 -14.70983 -14.58016 -14.13291 -14.07136 -13.89906 -13.34441 -13.28992 -13.06896 -12.93740 -12.89348 -12.79790 -12.66531 -12.52196 -12.41585 -12.09155 -11.89918 -11.64787 -11.58140 -11.39302 -11.29000 -10.66751 -10.24657 -9.33876 -9.18952 -8.94974 -8.15560 -6.13593 1.00281 1.40685 1.45292 1.53048 1.75236 2.13686 2.41228 2.56082 2.84394 3.17954 3.86400 4.09362 4.16124 4.17592 4.21152 4.29088 4.50602 4.51081 4.52913 4.68977 4.74909 4.76938 4.79661 4.87889 4.90039 4.93630 5.00713 5.06954 5.11486 5.24333 5.31551 5.33521 5.43347 5.47561 5.52046 5.63543 5.71127 6.07875 6.09738 6.33496 6.41889 6.57280 6.85601 6.97451 7.41624 7.65935 8.99573 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.010046 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.098638 B = 2786.514087 C = 4351.476449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.168 3.832 4 C -0.148 4.148 5 C -0.148 4.148 6 N -0.579 5.579 7 C 0.200 3.800 8 C -0.498 4.498 9 H 0.049 0.951 10 C 0.027 3.973 11 N -0.938 5.938 12 Si 0.915 3.085 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.245 1.245 16 C 0.586 3.414 17 O -0.597 6.597 18 C -0.267 4.267 19 C -0.187 4.187 20 C -0.045 4.045 21 N -0.443 5.443 22 C 0.065 3.935 23 C 0.062 3.938 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.695 -0.478 7.154 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.084 3.916 4 C -0.206 4.206 5 C -0.205 4.205 6 N -0.308 5.308 7 C 0.078 3.922 8 C -0.536 4.536 9 H 0.067 0.933 10 C -0.172 4.172 11 N -0.578 5.578 12 Si 0.739 3.261 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.168 1.168 16 C 0.379 3.621 17 O -0.483 6.483 18 C -0.277 4.277 19 C -0.209 4.209 20 C -0.171 4.171 21 N -0.118 5.118 22 C -0.075 4.075 23 C -0.075 4.075 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.190 0.810 39 H 0.200 0.800 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.825 -0.850 7.532 11.634 hybrid contribution -0.582 0.813 -0.245 1.029 sum 8.243 -0.037 7.287 11.003 Atomic orbital electron populations 1.21674 0.96360 1.00080 1.00960 1.21861 0.95497 0.96169 1.02864 1.20498 0.93736 0.92134 0.85246 1.22103 0.93987 1.01847 1.02678 1.22126 1.02349 1.00136 0.95902 1.47779 1.55714 1.22118 1.05204 1.20168 0.91462 0.82558 0.98001 1.21405 0.90902 0.95106 1.46205 0.93330 1.25504 0.94720 1.02034 0.94892 1.70034 1.04315 1.32758 1.50695 0.86210 0.79413 0.80817 0.79674 1.19436 1.21177 1.16792 1.17588 0.78811 0.82658 0.83069 1.90541 1.43882 1.27298 1.86566 1.20611 1.08774 1.05135 0.93229 1.23864 0.99402 0.99244 0.98429 1.22144 1.03978 1.00548 0.90385 1.43837 1.33697 1.26105 1.08200 1.22381 1.05053 1.05459 0.74607 1.21835 0.98633 0.97293 0.89706 0.92996 0.95644 0.92943 0.89771 0.91512 0.92768 0.93013 0.89925 0.89772 0.92289 0.92374 0.93477 0.94462 0.92690 0.80996 0.79968 0.90006 0.88009 0.87932 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.96 71.98 0.65 -4.80 16 2 C -0.13 -4.66 4.63 30.59 0.14 -4.52 16 3 C 0.17 6.26 0.72 3.60 0.00 6.26 16 4 C -0.15 -4.80 8.55 71.98 0.62 -4.18 16 5 C -0.15 -5.15 7.07 71.98 0.51 -4.65 16 6 N -0.58 -24.98 1.79 -783.08 -1.40 -26.37 16 7 C 0.20 9.04 3.10 85.63 0.27 9.30 16 8 C -0.50 -25.77 6.51 25.60 0.17 -25.60 16 9 H 0.05 2.90 5.87 -2.91 -0.02 2.88 16 10 C 0.03 1.43 5.07 84.65 0.43 1.86 16 11 N -0.94 -54.41 13.96 21.45 0.30 -54.11 16 12 Si 0.91 40.09 26.99 68.60 1.85 41.94 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.24 -9.97 6.68 99.48 0.66 -9.30 16 16 C 0.59 26.44 6.65 86.61 0.58 27.02 16 17 O -0.60 -27.73 13.18 -4.13 -0.05 -27.78 16 18 C -0.27 -11.36 6.04 -19.04 -0.11 -11.48 16 19 C -0.19 -7.97 8.27 23.62 0.20 -7.78 16 20 C -0.04 -1.52 11.34 83.12 0.94 -0.58 16 21 N -0.44 -12.76 3.09 -547.89 -1.69 -14.45 16 22 C 0.06 1.05 11.03 127.77 1.41 2.46 16 23 C 0.06 2.14 11.13 83.91 0.93 3.07 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.02 1.21 5.87 -2.38 -0.01 1.19 16 26 H 0.05 2.19 6.13 -2.39 -0.01 2.18 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.75 5.85 -2.38 -0.01 2.73 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.88 6.51 -2.38 -0.02 1.86 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.41 5.31 -2.39 -0.01 2.40 16 34 H 0.06 1.98 6.58 -2.39 -0.02 1.96 16 35 H 0.05 2.18 4.33 -2.39 -0.01 2.17 16 36 H 0.04 1.62 4.99 -2.39 -0.01 1.61 16 37 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 38 H 0.17 8.22 2.82 -2.91 -0.01 8.22 16 39 H 0.18 5.09 8.06 -2.91 -0.02 5.07 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 42 H 0.10 1.25 8.13 -2.39 -0.02 1.23 16 43 H 0.18 5.39 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -67.55 322.76 6.70 -60.85 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.97 Total: 33.55 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 6.72 Total: -13.63 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -2.79 Total: -94.93 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.85 Total: 41.94 kcal Total: -67.55 6.70 -60.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276280402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.235 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds