Wall clock time and date at job start Tue Mar 31 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47315 * 268.85630 * 3 2 1 5 5 C 1.52996 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47068 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99663 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00250 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00054 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47104 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.49653 * 54.93102 * 10 9 8 12 12 C 1.53046 * 109.49639 * 174.99712 * 10 9 8 13 13 C 1.53036 * 109.53321 * 181.31636 * 12 10 9 14 14 C 1.53195 * 109.31438 * 298.62889 * 13 12 10 15 15 N 1.46928 * 108.76762 * 54.64104 * 14 13 12 16 16 C 1.36944 * 120.62599 * 126.37188 * 15 14 13 17 17 H 1.07999 * 120.00077 * 332.77277 * 16 15 14 18 18 C 1.38812 * 119.99760 * 152.77762 * 16 15 14 19 19 N 1.31622 * 120.00067 * 159.76041 * 18 16 15 20 20 Si 1.86801 * 120.00054 * 339.75532 * 18 16 15 21 21 H 1.48502 * 109.46922 * 94.91377 * 20 18 16 22 22 H 1.48499 * 109.47279 * 214.91171 * 20 18 16 23 23 H 1.48497 * 109.47158 * 334.91061 * 20 18 16 24 24 C 1.46921 * 118.74071 * 306.38793 * 15 14 13 25 25 H 4.44656 * 5.63442 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47087 * 148.85742 * 3 2 1 27 27 H 1.09001 * 109.47487 * 28.85790 * 3 2 1 28 28 H 1.09004 * 109.46952 * 60.00029 * 4 3 2 29 29 H 1.09001 * 109.46974 * 300.00474 * 4 3 2 30 30 H 1.08994 * 109.47373 * 60.00019 * 5 4 3 31 31 H 1.09004 * 109.47051 * 299.99522 * 5 4 3 32 32 H 0.96998 * 120.00192 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47229 * 299.99728 * 9 8 6 34 34 H 1.09004 * 109.47360 * 59.99594 * 9 8 6 35 35 H 1.08998 * 109.46090 * 301.33893 * 12 10 9 36 36 H 1.08997 * 109.46012 * 61.30858 * 12 10 9 37 37 H 1.08999 * 109.50004 * 58.58795 * 13 12 10 38 38 H 1.09007 * 109.48917 * 178.65184 * 13 12 10 39 39 H 1.08995 * 109.58315 * 174.42475 * 14 13 12 40 40 H 1.08995 * 109.59101 * 294.85689 * 14 13 12 41 41 H 0.96996 * 119.99943 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58921 * 293.82245 * 24 15 14 43 43 H 1.09004 * 109.58926 * 173.40021 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0297 1.4423 5 6 4.6860 0.0310 1.4422 6 6 5.1884 0.0590 2.8627 7 8 4.4002 0.0766 3.7844 8 7 6.5134 0.0644 3.1090 9 6 7.0017 0.0910 4.4899 10 6 8.5318 0.0911 4.4899 11 1 8.8954 0.9206 3.8835 12 6 9.0425 0.2446 5.9244 13 6 10.5725 0.2778 5.9220 14 6 11.1071 -1.0420 5.3571 15 7 10.5064 -1.2684 4.0355 16 6 11.2955 -1.5095 2.9426 17 1 12.3031 -1.1224 2.9080 18 6 10.8002 -2.2514 1.8790 19 7 11.3644 -2.1599 0.6934 20 14 9.3328 -3.3798 2.1305 21 1 8.0877 -2.6642 1.7527 22 1 9.4864 -4.5882 1.2812 23 1 9.2580 -3.7840 3.5575 24 6 9.0432 -1.2307 3.9088 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8804 -0.5315 27 1 3.0098 -0.8992 -0.4960 28 1 2.7931 -0.8501 1.9737 29 1 2.7922 0.9296 1.9382 30 1 5.0485 0.9109 0.9108 31 1 5.0501 -0.8687 0.9461 32 1 7.1438 0.0499 2.3719 33 1 6.6380 0.9904 4.9867 34 1 6.6388 -0.7892 5.0207 35 1 8.6598 1.1727 6.3489 36 1 8.6987 -0.5979 6.5244 37 1 10.9175 1.1053 5.3020 38 1 10.9350 0.4112 6.9414 39 1 12.1914 -0.9857 5.2609 40 1 10.8394 -1.8606 6.0252 41 1 11.0180 -2.6781 -0.0498 42 1 8.6071 -2.0647 4.4587 43 1 8.7656 -1.2991 2.8569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277249409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:16 Heat of formation + Delta-G solvation = 14.035403 kcal Electronic energy + Delta-G solvation = -21648.122996 eV Core-core repulsion = 18501.520459 eV Total energy + Delta-G solvation = -3146.602537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.74117 -38.14330 -35.80752 -34.77058 -33.13149 -32.45454 -31.14305 -30.57717 -28.22233 -25.57888 -25.31610 -22.83613 -22.17586 -20.92490 -20.19784 -19.36433 -18.37490 -16.99488 -16.70725 -16.08346 -15.82619 -15.51227 -14.76525 -14.35589 -14.22517 -13.95898 -13.67708 -13.38542 -13.28750 -13.01468 -12.80692 -12.60018 -12.30389 -12.05907 -11.71049 -11.63106 -11.47191 -11.12474 -10.83969 -10.63394 -10.54845 -10.40376 -10.26620 -10.15856 -9.98716 -9.73871 -9.69314 -9.49206 -8.89542 -8.68325 -7.02896 -6.01115 -3.36849 2.61692 2.66561 2.75178 3.21664 3.34921 3.43282 3.46389 4.18258 4.45218 4.69827 4.80474 4.85457 4.94800 5.14282 5.21772 5.26294 5.32517 5.33257 5.40714 5.45123 5.51533 5.59028 5.77876 5.83532 5.86275 5.96460 6.01714 6.07629 6.11367 6.12703 6.27775 6.31311 6.51005 6.53035 6.56643 6.65767 6.70713 6.93664 7.44225 7.64019 7.90184 8.27040 8.33565 8.88315 9.65726 10.04306 11.14762 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.004312 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.794367 B = 6491.838950 C = 7685.120696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C -0.016 4.016 4 C -0.097 4.097 5 C -0.145 4.145 6 C 0.511 3.489 7 O -0.550 6.550 8 N -0.727 5.727 9 C 0.125 3.875 10 C -0.119 4.119 11 H 0.080 0.920 12 C -0.101 4.101 13 C -0.135 4.135 14 C 0.146 3.854 15 N -0.606 5.606 16 C -0.258 4.258 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.908 5.908 20 Si 0.881 3.119 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.134 3.866 25 H 0.216 0.784 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.405 0.595 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 5.906 2.494 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.181 4.181 3 C -0.053 4.053 4 C -0.135 4.135 5 C -0.185 4.185 6 C 0.298 3.702 7 O -0.428 6.428 8 N -0.378 5.378 9 C 0.001 3.999 10 C -0.140 4.140 11 H 0.098 0.902 12 C -0.139 4.139 13 C -0.174 4.174 14 C 0.020 3.980 15 N -0.330 5.330 16 C -0.386 4.386 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.712 3.288 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.009 3.991 25 H 0.233 0.767 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.588 5.843 2.993 15.091 hybrid contribution -0.670 -0.746 -0.392 1.077 sum -14.258 5.097 2.601 15.363 Atomic orbital electron populations 1.24888 0.95979 1.01566 1.00968 1.23146 0.94600 1.00084 1.00273 1.18805 0.84787 1.03584 0.98119 1.21257 0.93043 1.04248 0.94955 1.21709 0.97244 1.05020 0.94541 1.20632 0.82236 0.75796 0.91550 1.90678 1.55385 1.50121 1.46610 1.46153 1.07156 1.74786 1.09740 1.21438 0.94308 1.01730 0.82398 1.21977 0.92154 1.01628 0.98230 0.90193 1.21347 0.96428 1.00869 0.95281 1.21991 0.95082 1.00378 0.99915 1.20960 0.97168 0.93398 0.86442 1.44353 1.00539 1.83218 1.04851 1.18957 0.98491 1.27812 0.93384 0.89615 1.25277 0.98009 0.98659 0.95694 1.69833 1.43039 1.42485 0.99757 0.86991 0.82440 0.81499 0.77905 1.21728 1.23158 1.19606 1.21363 0.85165 0.93306 0.99316 0.76740 0.89345 0.89316 0.90789 0.90792 0.88474 0.88473 0.75941 0.91739 0.91784 0.92769 0.92349 0.91941 0.92574 0.91909 0.95996 0.92763 0.95602 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.18 -1.96 13.34 -37.13 -0.50 -2.45 16 3 C -0.02 -0.15 5.70 -29.52 -0.17 -0.32 16 4 C -0.10 -1.05 4.46 -26.73 -0.12 -1.17 16 5 C -0.15 -1.57 5.70 -27.88 -0.16 -1.73 16 6 C 0.51 7.52 7.83 -10.99 -0.09 7.44 16 7 O -0.55 -9.85 15.98 5.55 0.09 -9.76 16 8 N -0.73 -10.74 5.33 -60.29 -0.32 -11.06 16 9 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 10 C -0.12 -1.95 2.37 -90.50 -0.21 -2.16 16 11 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.10 -1.49 5.17 -26.69 -0.14 -1.62 16 13 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 14 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16 15 N -0.61 -13.84 2.77 -172.32 -0.48 -14.32 16 16 C -0.26 -6.97 10.04 -15.06 -0.15 -7.12 16 17 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 18 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 19 N -0.91 -26.87 13.97 55.49 0.78 -26.09 16 20 Si 0.88 21.65 24.35 -169.99 -4.14 17.51 16 21 H -0.29 -6.62 6.70 56.52 0.38 -6.24 16 22 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.27 -6.70 6.46 56.52 0.36 -6.33 16 24 C 0.13 2.76 3.28 -3.72 -0.01 2.74 16 25 H 0.22 1.34 7.80 -54.09 -0.42 0.92 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.41 5.77 7.71 -40.82 -0.31 5.46 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 43 H 0.07 1.52 3.71 -51.93 -0.19 1.32 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -32.21 347.11 -7.35 -39.56 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.24 Total: 3.94 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.27 Total: -5.02 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.02 Total: -51.48 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.21 -7.35 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277249409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.597 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds