Wall clock time and date at job start Tue Mar 31 2020 00:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47315 * 268.85630 * 3 2 1 5 5 C 1.52996 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47068 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99663 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00250 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00054 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47104 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.49653 * 54.93102 * 10 9 8 12 12 C 1.53046 * 109.49639 * 174.99712 * 10 9 8 13 13 C 1.53036 * 109.53321 * 181.31636 * 12 10 9 14 14 C 1.53195 * 109.31438 * 298.62889 * 13 12 10 15 15 N 1.46928 * 108.76762 * 54.64104 * 14 13 12 16 16 C 1.36944 * 120.62599 * 126.37188 * 15 14 13 17 17 H 1.07999 * 120.00077 * 332.77277 * 16 15 14 18 18 C 1.38812 * 119.99760 * 152.77762 * 16 15 14 19 19 N 1.31622 * 120.00067 * 159.76041 * 18 16 15 20 20 Si 1.86801 * 120.00054 * 339.75532 * 18 16 15 21 21 H 1.48502 * 109.46922 * 94.91377 * 20 18 16 22 22 H 1.48499 * 109.47279 * 214.91171 * 20 18 16 23 23 H 1.48497 * 109.47158 * 334.91061 * 20 18 16 24 24 C 1.46921 * 118.74071 * 306.38793 * 15 14 13 25 25 H 4.44656 * 5.63442 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47087 * 148.85742 * 3 2 1 27 27 H 1.09001 * 109.47487 * 28.85790 * 3 2 1 28 28 H 1.09004 * 109.46952 * 60.00029 * 4 3 2 29 29 H 1.09001 * 109.46974 * 300.00474 * 4 3 2 30 30 H 1.08994 * 109.47373 * 60.00019 * 5 4 3 31 31 H 1.09004 * 109.47051 * 299.99522 * 5 4 3 32 32 H 0.96998 * 120.00192 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47229 * 299.99728 * 9 8 6 34 34 H 1.09004 * 109.47360 * 59.99594 * 9 8 6 35 35 H 1.08998 * 109.46090 * 301.33893 * 12 10 9 36 36 H 1.08997 * 109.46012 * 61.30858 * 12 10 9 37 37 H 1.08999 * 109.50004 * 58.58795 * 13 12 10 38 38 H 1.09007 * 109.48917 * 178.65184 * 13 12 10 39 39 H 1.08995 * 109.58315 * 174.42475 * 14 13 12 40 40 H 1.08995 * 109.59101 * 294.85689 * 14 13 12 41 41 H 0.96996 * 119.99943 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58921 * 293.82245 * 24 15 14 43 43 H 1.09004 * 109.58926 * 173.40021 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0297 1.4423 5 6 4.6860 0.0310 1.4422 6 6 5.1884 0.0590 2.8627 7 8 4.4002 0.0766 3.7844 8 7 6.5134 0.0644 3.1090 9 6 7.0017 0.0910 4.4899 10 6 8.5318 0.0911 4.4899 11 1 8.8954 0.9206 3.8835 12 6 9.0425 0.2446 5.9244 13 6 10.5725 0.2778 5.9220 14 6 11.1071 -1.0420 5.3571 15 7 10.5064 -1.2684 4.0355 16 6 11.2955 -1.5095 2.9426 17 1 12.3031 -1.1224 2.9080 18 6 10.8002 -2.2514 1.8790 19 7 11.3644 -2.1599 0.6934 20 14 9.3328 -3.3798 2.1305 21 1 8.0877 -2.6642 1.7527 22 1 9.4864 -4.5882 1.2812 23 1 9.2580 -3.7840 3.5575 24 6 9.0432 -1.2307 3.9088 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8804 -0.5315 27 1 3.0098 -0.8992 -0.4960 28 1 2.7931 -0.8501 1.9737 29 1 2.7922 0.9296 1.9382 30 1 5.0485 0.9109 0.9108 31 1 5.0501 -0.8687 0.9461 32 1 7.1438 0.0499 2.3719 33 1 6.6380 0.9904 4.9867 34 1 6.6388 -0.7892 5.0207 35 1 8.6598 1.1727 6.3489 36 1 8.6987 -0.5979 6.5244 37 1 10.9175 1.1053 5.3020 38 1 10.9350 0.4112 6.9414 39 1 12.1914 -0.9857 5.2609 40 1 10.8394 -1.8606 6.0252 41 1 11.0180 -2.6781 -0.0498 42 1 8.6071 -2.0647 4.4587 43 1 8.7656 -1.2991 2.8569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277249409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:15 Heat of formation + Delta-G solvation = -6.569960 kcal Electronic energy + Delta-G solvation = -21649.016511 eV Core-core repulsion = 18501.520459 eV Total energy + Delta-G solvation = -3147.496053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93036 -39.58582 -36.67988 -36.10239 -34.81940 -33.35173 -32.78972 -32.06182 -29.13213 -27.20121 -26.75553 -24.24072 -23.34902 -22.28920 -21.40747 -20.72925 -19.13718 -18.82363 -17.89808 -17.28618 -17.03683 -16.89774 -16.12547 -15.70396 -15.40539 -15.26182 -15.00273 -14.82210 -14.55599 -14.48487 -13.97087 -13.81396 -13.54933 -13.36816 -13.25654 -13.04277 -12.56201 -12.51596 -12.18694 -12.07886 -11.97009 -11.69746 -11.56906 -11.38193 -11.26562 -11.18809 -10.98630 -10.85435 -10.64467 -10.10095 -8.91747 -8.15427 -5.47034 1.25898 1.42343 1.49331 1.62579 1.84051 1.91885 2.27565 2.39819 3.05305 3.33130 3.50510 3.73694 3.85495 3.92846 3.98359 4.05309 4.15307 4.30246 4.43437 4.48860 4.52895 4.60837 4.63364 4.67478 4.73758 4.78362 4.79710 4.89700 4.98030 5.10252 5.16780 5.19499 5.20609 5.24167 5.28958 5.30837 5.46705 5.59131 5.88144 6.14280 6.49970 6.71245 6.92941 7.20167 7.63413 8.04522 9.04463 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.004312 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.794367 B = 6491.838950 C = 7685.120696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.218 4.218 3 C -0.013 4.013 4 C -0.090 4.090 5 C -0.139 4.139 6 C 0.507 3.493 7 O -0.586 6.586 8 N -0.728 5.728 9 C 0.131 3.869 10 C -0.105 4.105 11 H 0.075 0.925 12 C -0.100 4.100 13 C -0.125 4.125 14 C 0.137 3.863 15 N -0.621 5.621 16 C -0.248 4.248 17 H 0.052 0.948 18 C -0.029 4.029 19 N -0.954 5.954 20 Si 0.940 3.060 21 H -0.262 1.262 22 H -0.315 1.315 23 H -0.273 1.273 24 C 0.132 3.868 25 H 0.242 0.758 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.022 0.978 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.803 6.667 3.338 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.218 4.218 3 C -0.049 4.049 4 C -0.128 4.128 5 C -0.179 4.179 6 C 0.296 3.704 7 O -0.466 6.466 8 N -0.380 5.380 9 C 0.007 3.993 10 C -0.126 4.126 11 H 0.094 0.906 12 C -0.138 4.138 13 C -0.163 4.163 14 C 0.012 3.988 15 N -0.345 5.345 16 C -0.378 4.378 17 H 0.070 0.930 18 C -0.224 4.224 19 N -0.600 5.600 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.244 1.244 23 H -0.198 1.198 24 C 0.007 3.993 25 H 0.259 0.741 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.244 0.756 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.305 6.627 3.870 17.122 hybrid contribution -0.077 -0.951 -0.589 1.121 sum -15.382 5.677 3.282 16.721 Atomic orbital electron populations 1.25718 0.97027 1.00711 0.99869 1.23754 0.95710 1.01022 1.01320 1.18833 0.84123 1.04986 0.96997 1.21144 0.93095 1.02650 0.95887 1.21762 0.96992 1.06922 0.92212 1.21290 0.81752 0.74628 0.92767 1.90662 1.56120 1.51787 1.48073 1.46229 1.07454 1.74591 1.09719 1.21351 0.93148 1.01990 0.82850 1.21792 0.92892 0.98697 0.99211 0.90625 1.21384 0.95607 1.02697 0.94079 1.21888 0.95713 0.97502 1.01233 1.21178 0.96831 0.95807 0.84943 1.44502 1.01392 1.83479 1.05166 1.18887 0.97723 1.26588 0.94575 0.92981 1.25812 1.01108 1.00127 0.95362 1.69951 1.45432 1.43959 1.00663 0.86028 0.80731 0.79135 0.77195 1.18836 1.24407 1.19807 1.21373 0.83742 0.95518 0.98703 0.74134 0.87559 0.88202 0.92784 0.92069 0.85732 0.87138 0.75578 0.90479 0.92515 0.89807 0.91735 0.92762 0.89360 0.92860 0.95159 0.92870 0.95995 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.90 19.25 74.32 1.43 -2.47 16 2 C -0.22 -4.44 13.34 31.12 0.42 -4.02 16 3 C -0.01 -0.21 5.70 28.79 0.16 -0.05 16 4 C -0.09 -1.83 4.46 30.60 0.14 -1.69 16 5 C -0.14 -2.70 5.70 29.85 0.17 -2.53 16 6 C 0.51 14.06 7.83 87.66 0.69 14.75 16 7 O -0.59 -20.39 15.98 -3.05 -0.05 -20.44 16 8 N -0.73 -20.06 5.33 -463.05 -2.47 -22.53 16 9 C 0.13 3.66 5.07 86.38 0.44 4.10 16 10 C -0.11 -3.20 2.37 -10.71 -0.03 -3.23 16 11 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 12 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 13 C -0.12 -3.51 6.08 30.67 0.19 -3.32 16 14 C 0.14 5.04 6.52 86.36 0.56 5.60 16 15 N -0.62 -28.01 2.77 -699.11 -1.94 -29.95 16 16 C -0.25 -13.63 10.04 84.03 0.84 -12.78 16 17 H 0.05 3.15 8.05 -2.91 -0.02 3.12 16 18 C -0.03 -1.64 5.24 84.86 0.44 -1.19 16 19 N -0.95 -57.75 13.97 21.65 0.30 -57.44 16 20 Si 0.94 44.88 24.35 68.60 1.67 46.55 16 21 H -0.26 -11.22 6.70 99.48 0.67 -10.55 16 22 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 23 H -0.27 -12.97 6.46 99.48 0.64 -12.32 16 24 C 0.13 5.20 3.28 86.36 0.28 5.48 16 25 H 0.24 2.49 7.80 -4.41 -0.03 2.46 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.06 1.38 8.10 -2.39 -0.02 1.37 16 30 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.41 10.79 7.71 -92.71 -0.71 10.08 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.02 0.90 6.98 -2.39 -0.02 0.88 16 43 H 0.05 2.26 3.71 -2.39 -0.01 2.25 16 Total: -1.00 -70.87 347.11 3.57 -67.31 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.16 Total: 20.29 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.89 Total: -3.78 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -4.11 Total: -109.93 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.67 Total: 46.55 kcal Total: -70.87 3.57 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277249409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.737 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds