Wall clock time and date at job start Tue Mar 31 2020 00:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99789 * 2 1 4 4 N 1.46908 * 109.46953 * 124.14784 * 3 2 1 5 5 C 1.46898 * 110.99797 * 300.27847 * 4 3 2 6 6 C 1.50705 * 109.46707 * 288.15792 * 5 4 3 7 7 H 1.08001 * 120.00137 * 354.75037 * 6 5 4 8 8 C 1.37874 * 119.99946 * 174.74556 * 6 5 4 9 9 N 1.31519 * 120.00310 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47560 * 59.99968 * 10 8 6 12 12 H 1.48504 * 109.47331 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47029 * 299.99981 * 10 8 6 14 14 C 1.46902 * 110.99568 * 64.22772 * 4 3 2 15 15 C 1.50691 * 109.47448 * 66.04678 * 14 4 3 16 16 N 1.30256 * 125.61862 * 89.97479 * 15 14 4 17 17 C 1.34483 * 108.70191 * 179.77994 * 16 15 14 18 18 C 1.34335 * 107.66592 * 0.39285 * 17 16 15 19 19 C 1.50701 * 126.44060 * 179.87825 * 18 17 16 20 20 C 1.53003 * 109.46800 * 59.71249 * 19 18 17 21 21 C 1.52998 * 109.47252 * 299.70910 * 19 18 17 22 22 C 1.53000 * 109.46890 * 179.70877 * 19 18 17 23 23 O 1.33966 * 125.61978 * 269.99796 * 15 14 4 24 24 H 1.07995 * 120.00025 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.99790 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00076 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47278 * 4.15248 * 3 2 1 28 28 H 1.09002 * 109.47490 * 244.14371 * 3 2 1 29 29 H 1.08991 * 109.47750 * 48.15790 * 5 4 3 30 30 H 1.09001 * 109.47286 * 168.16718 * 5 4 3 31 31 H 0.96992 * 120.00251 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.47242 * 306.04249 * 14 4 3 33 33 H 1.08999 * 109.46801 * 186.05188 * 14 4 3 34 34 H 1.07996 * 126.16649 * 180.26848 * 17 16 15 35 35 H 1.09003 * 109.47260 * 299.99563 * 20 19 18 36 36 H 1.09005 * 109.46583 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47168 * 60.00106 * 20 19 18 38 38 H 1.08995 * 109.46970 * 179.97438 * 21 19 18 39 39 H 1.08996 * 109.46862 * 300.00544 * 21 19 18 40 40 H 1.09006 * 109.46793 * 59.99826 * 21 19 18 41 41 H 1.08997 * 109.47135 * 300.00034 * 22 19 18 42 42 H 1.09000 * 109.46866 * 60.00410 * 22 19 18 43 43 H 1.08995 * 109.47066 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3404 1.1463 5 6 2.2479 1.2139 2.4126 6 6 1.4884 2.4873 2.6824 7 1 1.6114 3.3382 2.0288 8 6 0.6366 2.5660 3.7637 9 7 0.4872 1.5299 4.5599 10 14 -0.3052 4.1441 4.0978 11 1 -1.1726 4.4588 2.9343 12 1 -1.1465 3.9715 5.3093 13 1 0.6542 5.2566 4.3152 14 6 4.0114 0.2994 1.0282 15 6 4.8988 0.6021 -0.1515 16 7 5.9865 1.3179 -0.1185 17 6 6.5100 1.3641 -1.3564 18 6 5.7043 0.6576 -2.1664 19 6 5.8928 0.4357 -3.6450 20 6 7.2279 -0.2709 -3.8884 21 6 5.8903 1.7843 -4.3675 22 6 4.7517 -0.4317 -4.1801 23 8 4.6989 0.1797 -1.4069 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3575 2.1322 0.0744 28 1 2.6333 1.3957 -0.9248 29 1 1.5482 0.3809 2.3454 30 1 2.9524 1.0321 3.2242 31 1 -0.1118 1.5854 5.3208 32 1 3.5335 -0.6697 0.8842 33 1 4.6112 0.2769 1.9380 34 1 7.4141 1.8784 -1.6473 35 1 8.0409 0.3470 -3.5072 36 1 7.3641 -0.4318 -4.9579 37 1 7.2296 -1.2317 -3.3737 38 1 6.0272 1.6238 -5.4369 39 1 4.9393 2.2876 -4.1940 40 1 6.7033 2.4023 -3.9862 41 1 4.7535 -1.3925 -3.6654 42 1 3.8006 0.0717 -4.0067 43 1 4.8879 -0.5919 -5.2496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292154312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:21 Heat of formation + Delta-G solvation = 37.177920 kcal Electronic energy + Delta-G solvation = -22137.070030 eV Core-core repulsion = 18991.471027 eV Total energy + Delta-G solvation = -3145.599002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.10286 -37.61733 -36.99664 -34.43827 -32.82723 -32.37018 -29.90479 -27.66212 -27.54941 -27.19783 -26.32952 -24.07097 -22.56347 -21.40973 -20.82525 -19.61034 -18.94460 -16.75830 -16.53084 -16.17939 -15.35440 -15.11905 -14.66063 -14.34592 -14.30963 -14.12855 -13.72080 -13.49744 -13.29700 -12.59987 -12.50395 -12.29045 -12.16195 -11.93578 -11.85943 -11.50366 -11.29830 -11.24352 -11.13918 -11.04757 -10.94360 -10.75160 -10.62805 -10.48124 -10.11233 -9.97701 -9.33053 -8.76646 -8.45542 -8.38900 -7.37223 -6.01101 -4.01954 1.68851 2.83172 2.85055 3.01486 3.35055 3.39009 3.42578 4.26643 4.44936 4.49336 4.67260 4.68638 4.98968 5.07284 5.22995 5.32790 5.34593 5.35256 5.49694 5.50454 5.55906 5.60068 5.61640 5.70650 5.79005 5.85825 5.88533 5.96289 6.02376 6.07264 6.16567 6.29195 6.39738 6.57145 6.61925 7.11364 7.16808 7.27677 7.38757 7.77874 7.98478 8.09925 8.12626 8.48020 9.04683 9.61625 11.09466 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.004077 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.062968 B = 6865.996720 C = 7135.027444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 C 0.089 3.911 4 N -0.521 5.521 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.143 3.857 15 C 0.216 3.784 16 N -0.473 5.473 17 C -0.039 4.039 18 C -0.050 4.050 19 C 0.021 3.979 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.144 4.144 23 O -0.197 6.197 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.011 0.989 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.175 0.825 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -4.995 -17.451 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C -0.039 4.039 4 N -0.245 5.245 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.014 3.986 15 C 0.009 3.991 16 N -0.202 5.202 17 C -0.178 4.178 18 C -0.104 4.104 19 C 0.021 3.979 20 C -0.196 4.196 21 C -0.197 4.197 22 C -0.201 4.201 23 O -0.084 6.084 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.192 0.808 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.723 -4.327 -16.713 19.814 hybrid contribution -1.165 -0.259 -0.235 1.216 sum 8.558 -4.586 -16.948 19.532 Atomic orbital electron populations 1.23704 0.95945 1.01233 1.00297 1.23471 0.96750 0.99522 1.00423 1.21283 0.94706 0.94817 0.93118 1.62450 1.13739 1.43363 1.04998 1.19824 0.92259 0.97661 0.83464 1.21038 1.23786 0.98440 1.10927 0.91980 1.24938 0.96863 0.96486 0.96071 1.69939 1.37979 1.29695 1.16161 0.86584 0.79776 0.83693 0.77500 1.20330 1.21394 1.20157 1.20527 0.92659 0.95154 0.90285 1.26466 0.94590 0.94151 0.83909 1.70484 1.09040 1.17439 1.23241 1.22938 1.02341 1.03804 0.88716 1.23213 0.90090 1.02431 0.94658 1.19037 0.97036 0.97130 0.84726 1.21921 0.95062 1.00581 1.02031 1.21924 1.02895 0.94992 0.99881 1.21857 0.97677 0.99747 1.00811 1.84417 1.43799 1.59962 1.20253 0.88406 0.89545 0.88592 0.89384 0.92400 0.97086 0.95422 0.92895 0.92656 0.87135 0.80815 0.91961 0.91469 0.92214 0.91479 0.91992 0.91957 0.92150 0.91922 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 14.32 29.01 0.42 -2.64 16 2 C -0.18 -3.32 7.42 -36.03 -0.27 -3.58 16 3 C 0.09 1.75 5.49 -4.97 -0.03 1.73 16 4 N -0.52 -11.29 4.65 -238.96 -1.11 -12.40 16 5 C 0.19 4.87 4.58 -4.97 -0.02 4.85 16 6 C -0.50 -13.98 8.53 -34.44 -0.29 -14.28 16 7 H 0.06 1.74 7.66 -52.49 -0.40 1.33 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.14 2.65 5.43 -4.98 -0.03 2.63 16 15 C 0.22 3.88 6.92 -12.95 -0.09 3.79 16 16 N -0.47 -8.68 11.29 -11.10 -0.13 -8.80 16 17 C -0.04 -0.58 11.24 -17.77 -0.20 -0.78 16 18 C -0.05 -0.69 5.70 -35.68 -0.20 -0.90 16 19 C 0.02 0.21 0.93 -155.66 -0.15 0.07 16 20 C -0.14 -1.10 8.35 37.16 0.31 -0.79 16 21 C -0.14 -1.20 8.36 37.16 0.31 -0.89 16 22 C -0.14 -1.37 8.06 37.16 0.30 -1.07 16 23 O -0.20 -3.22 9.50 5.36 0.05 -3.17 16 24 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 25 H 0.09 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.10 1.64 6.80 -52.49 -0.36 1.29 16 27 H 0.09 1.87 7.04 -51.93 -0.37 1.51 16 28 H 0.06 1.09 6.59 -51.93 -0.34 0.75 16 29 H 0.01 0.30 6.71 -51.93 -0.35 -0.05 16 30 H 0.03 0.74 7.81 -51.93 -0.41 0.34 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.06 0.95 6.34 -51.92 -0.33 0.62 16 33 H 0.11 2.03 7.86 -51.93 -0.41 1.62 16 34 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.06 0.46 8.01 -51.93 -0.42 0.05 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.50 8.02 -51.93 -0.42 0.09 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -30.78 352.47 -7.34 -38.11 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.14 Total: 0.23 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.04 Total: -10.34 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.50 Total: -46.78 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: 0.05 Total: -3.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.78 -7.34 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292154312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.291 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds