Wall clock time and date at job start Tue Mar 31 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99789 * 2 1 4 4 N 1.46908 * 109.46953 * 124.14784 * 3 2 1 5 5 C 1.46898 * 110.99797 * 300.27847 * 4 3 2 6 6 C 1.50705 * 109.46707 * 288.15792 * 5 4 3 7 7 H 1.08001 * 120.00137 * 354.75037 * 6 5 4 8 8 C 1.37874 * 119.99946 * 174.74556 * 6 5 4 9 9 N 1.31519 * 120.00310 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47560 * 59.99968 * 10 8 6 12 12 H 1.48504 * 109.47331 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47029 * 299.99981 * 10 8 6 14 14 C 1.46902 * 110.99568 * 64.22772 * 4 3 2 15 15 C 1.50691 * 109.47448 * 66.04678 * 14 4 3 16 16 N 1.30256 * 125.61862 * 89.97479 * 15 14 4 17 17 C 1.34483 * 108.70191 * 179.77994 * 16 15 14 18 18 C 1.34335 * 107.66592 * 0.39285 * 17 16 15 19 19 C 1.50701 * 126.44060 * 179.87825 * 18 17 16 20 20 C 1.53003 * 109.46800 * 59.71249 * 19 18 17 21 21 C 1.52998 * 109.47252 * 299.70910 * 19 18 17 22 22 C 1.53000 * 109.46890 * 179.70877 * 19 18 17 23 23 O 1.33966 * 125.61978 * 269.99796 * 15 14 4 24 24 H 1.07995 * 120.00025 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.99790 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00076 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47278 * 4.15248 * 3 2 1 28 28 H 1.09002 * 109.47490 * 244.14371 * 3 2 1 29 29 H 1.08991 * 109.47750 * 48.15790 * 5 4 3 30 30 H 1.09001 * 109.47286 * 168.16718 * 5 4 3 31 31 H 0.96992 * 120.00251 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.47242 * 306.04249 * 14 4 3 33 33 H 1.08999 * 109.46801 * 186.05188 * 14 4 3 34 34 H 1.07996 * 126.16649 * 180.26848 * 17 16 15 35 35 H 1.09003 * 109.47260 * 299.99563 * 20 19 18 36 36 H 1.09005 * 109.46583 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47168 * 60.00106 * 20 19 18 38 38 H 1.08995 * 109.46970 * 179.97438 * 21 19 18 39 39 H 1.08996 * 109.46862 * 300.00544 * 21 19 18 40 40 H 1.09006 * 109.46793 * 59.99826 * 21 19 18 41 41 H 1.08997 * 109.47135 * 300.00034 * 22 19 18 42 42 H 1.09000 * 109.46866 * 60.00410 * 22 19 18 43 43 H 1.08995 * 109.47066 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3404 1.1463 5 6 2.2479 1.2139 2.4126 6 6 1.4884 2.4873 2.6824 7 1 1.6114 3.3382 2.0288 8 6 0.6366 2.5660 3.7637 9 7 0.4872 1.5299 4.5599 10 14 -0.3052 4.1441 4.0978 11 1 -1.1726 4.4588 2.9343 12 1 -1.1465 3.9715 5.3093 13 1 0.6542 5.2566 4.3152 14 6 4.0114 0.2994 1.0282 15 6 4.8988 0.6021 -0.1515 16 7 5.9865 1.3179 -0.1185 17 6 6.5100 1.3641 -1.3564 18 6 5.7043 0.6576 -2.1664 19 6 5.8928 0.4357 -3.6450 20 6 7.2279 -0.2709 -3.8884 21 6 5.8903 1.7843 -4.3675 22 6 4.7517 -0.4317 -4.1801 23 8 4.6989 0.1797 -1.4069 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3575 2.1322 0.0744 28 1 2.6333 1.3957 -0.9248 29 1 1.5482 0.3809 2.3454 30 1 2.9524 1.0321 3.2242 31 1 -0.1118 1.5854 5.3208 32 1 3.5335 -0.6697 0.8842 33 1 4.6112 0.2769 1.9380 34 1 7.4141 1.8784 -1.6473 35 1 8.0409 0.3470 -3.5072 36 1 7.3641 -0.4318 -4.9579 37 1 7.2296 -1.2317 -3.3737 38 1 6.0272 1.6238 -5.4369 39 1 4.9393 2.2876 -4.1940 40 1 6.7033 2.4023 -3.9862 41 1 4.7535 -1.3925 -3.6654 42 1 3.8006 0.0717 -4.0067 43 1 4.8879 -0.5919 -5.2496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292154312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:20 Heat of formation + Delta-G solvation = 16.779873 kcal Electronic energy + Delta-G solvation = -22137.954556 eV Core-core repulsion = 18991.471027 eV Total energy + Delta-G solvation = -3146.483528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.34636 -39.18448 -37.90480 -35.72532 -34.84938 -33.94453 -31.38445 -29.12600 -28.30920 -28.17981 -27.74710 -25.88388 -23.69735 -23.09093 -22.28019 -20.57892 -20.47976 -18.41553 -17.89095 -17.73367 -16.98202 -16.41976 -16.13247 -15.99923 -15.42575 -15.32509 -14.91409 -14.75279 -14.31780 -14.13078 -13.96536 -13.27307 -13.20550 -13.12150 -13.07412 -12.78113 -12.64047 -12.62357 -12.48223 -12.45203 -12.23526 -12.16573 -12.02870 -11.99019 -11.88912 -11.38096 -11.33773 -10.57954 -10.24612 -9.63542 -9.10096 -8.16486 -6.25105 0.46122 1.39974 1.42321 1.44383 1.51969 1.62979 1.74861 2.42546 3.04620 3.16559 3.39475 3.59764 3.83630 3.94971 4.00929 4.01719 4.17110 4.21492 4.34853 4.43506 4.51522 4.66710 4.73883 4.77281 4.83647 4.87370 4.91635 4.96246 5.02132 5.03686 5.10751 5.18490 5.25564 5.28471 5.34192 5.37051 5.39566 5.64678 5.68337 5.85848 6.05087 6.24916 6.49674 6.83190 6.87957 7.43093 8.93515 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.004077 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.062968 B = 6865.996720 C = 7135.027444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.192 4.192 3 C 0.097 3.903 4 N -0.534 5.534 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.148 3.852 15 C 0.194 3.806 16 N -0.498 5.498 17 C -0.056 4.056 18 C -0.036 4.036 19 C 0.019 3.981 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.143 4.143 23 O -0.203 6.203 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.066 0.934 29 H -0.005 1.005 30 H 0.005 0.995 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.202 0.798 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -4.863 -19.594 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.211 4.211 3 C -0.031 4.031 4 N -0.258 5.258 5 C 0.084 3.916 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.019 3.981 15 C -0.013 4.013 16 N -0.228 5.228 17 C -0.195 4.195 18 C -0.090 4.090 19 C 0.019 3.981 20 C -0.193 4.193 21 C -0.195 4.195 22 C -0.200 4.200 23 O -0.090 6.090 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.013 0.987 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.219 0.781 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.225 -4.202 -18.880 21.879 hybrid contribution -1.244 -0.318 0.323 1.324 sum 8.981 -4.520 -18.558 21.106 Atomic orbital electron populations 1.23880 0.95841 1.02031 0.99045 1.23441 0.97051 0.99149 1.01504 1.21143 0.94250 0.95092 0.92610 1.62279 1.14210 1.45241 1.04071 1.19430 0.91334 0.96165 0.84642 1.21300 1.24323 0.99060 1.11034 0.92739 1.25731 0.97686 0.99645 0.95741 1.70049 1.38670 1.31605 1.16619 0.85575 0.78512 0.79697 0.77671 1.19369 1.20735 1.19813 1.20385 0.91910 0.94842 0.90914 1.26040 0.95041 0.95811 0.84364 1.70426 1.09445 1.17588 1.25361 1.23400 1.03621 1.04774 0.87661 1.24135 0.88425 1.00278 0.96144 1.19349 0.98396 0.98412 0.81954 1.21929 0.93700 0.99902 1.03738 1.21943 1.02274 0.93891 1.01406 1.21871 0.96735 0.98926 1.02512 1.84409 1.44663 1.60038 1.19881 0.89213 0.87160 0.87307 0.91435 0.91578 0.98694 0.97733 0.92719 0.91333 0.87655 0.78084 0.91327 0.88860 0.93038 0.88749 0.93592 0.91386 0.93020 0.93529 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.90 14.32 67.77 0.97 -4.93 16 2 C -0.19 -6.98 7.42 25.64 0.19 -6.79 16 3 C 0.10 3.89 5.49 85.55 0.47 4.36 16 4 N -0.53 -23.76 4.65 -909.93 -4.23 -27.99 16 5 C 0.21 10.98 4.58 85.56 0.39 11.37 16 6 C -0.52 -29.42 8.53 25.60 0.22 -29.21 16 7 H 0.05 3.11 7.66 -2.91 -0.02 3.09 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 10 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.15 5.64 5.43 85.55 0.46 6.11 16 15 C 0.19 7.04 6.92 88.34 0.61 7.65 16 16 N -0.50 -18.30 11.29 -303.83 -3.43 -21.73 16 17 C -0.06 -1.60 11.24 83.39 0.94 -0.67 16 18 C -0.04 -0.96 5.70 24.79 0.14 -0.82 16 19 C 0.02 0.34 0.93 -52.93 -0.05 0.29 16 20 C -0.14 -1.72 8.35 71.98 0.60 -1.12 16 21 C -0.14 -1.98 8.36 71.98 0.60 -1.37 16 22 C -0.14 -2.43 8.06 71.98 0.58 -1.85 16 23 O -0.20 -6.56 9.50 -3.75 -0.04 -6.60 16 24 H 0.09 3.24 7.84 -2.91 -0.02 3.22 16 25 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.11 3.66 6.80 -2.91 -0.02 3.64 16 27 H 0.07 2.96 7.04 -2.39 -0.02 2.94 16 28 H 0.07 2.52 6.59 -2.39 -0.02 2.50 16 29 H 0.00 -0.26 6.71 -2.39 -0.02 -0.27 16 30 H 0.00 0.26 7.81 -2.39 -0.02 0.24 16 31 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.07 2.39 6.34 -2.38 -0.02 2.37 16 33 H 0.11 4.04 7.86 -2.39 -0.02 4.02 16 34 H 0.20 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.07 0.80 8.01 -2.39 -0.02 0.78 16 36 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.90 8.02 -2.38 -0.02 0.88 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -66.73 352.47 2.17 -64.57 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.96 Total: 15.92 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 6.59 Total: -15.92 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -7.38 Total: -104.53 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.04 Total: -6.60 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.73 2.17 -64.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292154312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.347 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds