Wall clock time and date at job start Tue Mar 31 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46907 * 109.47373 * 260.00587 * 9 8 7 11 11 C 1.46895 * 110.99883 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46830 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47432 * 300.00314 * 12 11 10 14 14 C 1.53008 * 109.46938 * 59.99919 * 12 11 10 15 15 C 1.52997 * 109.47298 * 179.97438 * 12 11 10 16 16 C 1.50691 * 109.47327 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00286 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00290 * 180.02562 * 16 15 12 19 19 N 1.31508 * 120.00451 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99821 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47101 * 89.99865 * 20 18 16 22 22 H 1.48501 * 109.47220 * 210.00230 * 20 18 16 23 23 H 1.48507 * 109.47146 * 329.99990 * 20 18 16 24 24 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 26 26 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 27 27 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 28 28 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 30 30 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 31 31 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 32 32 H 1.00906 * 110.99583 * 303.95327 * 10 9 8 33 33 H 1.08998 * 109.47392 * 299.99379 * 11 10 9 34 34 H 1.08995 * 109.47108 * 60.00296 * 11 10 9 35 35 H 1.08997 * 109.47124 * 59.99298 * 13 12 11 36 36 H 1.08994 * 109.47196 * 180.02562 * 13 12 11 37 37 H 1.09008 * 109.46863 * 299.99738 * 13 12 11 38 38 H 1.09002 * 109.46888 * 60.00006 * 14 12 11 39 39 H 1.08994 * 109.47052 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.46963 * 300.00301 * 14 12 11 41 41 H 1.09002 * 109.47182 * 300.00394 * 15 12 11 42 42 H 1.08997 * 109.47018 * 59.99757 * 15 12 11 43 43 H 0.97001 * 120.00478 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3607 -0.4812 -1.3654 11 6 5.1831 -1.6977 -1.4050 12 6 5.2389 -2.2289 -2.8388 13 6 3.8228 -2.5548 -3.3175 14 6 5.8544 -1.1671 -3.7525 15 6 6.0960 -3.4957 -2.8803 16 6 6.1515 -4.0185 -4.2925 17 1 5.6282 -3.4991 -5.0817 18 6 6.8704 -5.1601 -4.5773 19 7 6.9193 -5.6162 -5.8098 20 14 7.7749 -6.0590 -3.2123 21 1 6.8759 -7.0748 -2.6080 22 1 8.9750 -6.7308 -3.7724 23 1 8.1930 -5.0861 -2.1712 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2244 2.3567 0.0003 28 1 1.4006 4.5174 0.0011 29 1 5.0999 2.6329 0.0011 30 1 5.2864 0.3019 0.3502 31 1 3.8385 -0.6862 0.6592 32 1 3.4392 -0.6549 -1.7379 33 1 6.1919 -1.4656 -1.0637 34 1 4.7443 -2.4542 -0.7545 35 1 3.2126 -1.6521 -3.2880 36 1 3.8627 -2.9337 -4.3387 37 1 3.3843 -3.3113 -2.6666 38 1 6.8633 -0.9350 -3.4114 39 1 5.8946 -1.5457 -4.7738 40 1 5.2442 -0.2645 -3.7229 41 1 7.1049 -3.2631 -2.5394 42 1 5.6579 -4.2522 -2.2293 43 1 7.4247 -6.4195 -6.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292629256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:12 Heat of formation + Delta-G solvation = -15.012494 kcal Electronic energy + Delta-G solvation = -21761.682588 eV Core-core repulsion = 18613.820439 eV Total energy + Delta-G solvation = -3147.862149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.91412 -38.42886 -37.73032 -34.90130 -32.42170 -31.45029 -31.24560 -27.98050 -27.69151 -26.38648 -26.29453 -24.34713 -23.11827 -22.14871 -21.55683 -18.60662 -17.86312 -17.33700 -16.77487 -16.19356 -15.79985 -15.18305 -14.96034 -14.66859 -14.49751 -14.12150 -13.99342 -13.64094 -13.26313 -12.96466 -12.74971 -12.50835 -12.22257 -12.03250 -11.89623 -11.85418 -11.28723 -11.04196 -10.92545 -10.82245 -10.46286 -10.30611 -9.80588 -9.69885 -9.65177 -9.40324 -9.27280 -8.96351 -8.85948 -8.47392 -8.09626 -5.97659 -3.93617 0.88866 1.13996 2.83818 3.33748 3.41546 3.45409 3.58749 4.22768 4.40776 4.50473 4.55604 4.60027 4.77931 4.79375 4.88138 5.11126 5.13971 5.26438 5.35536 5.47737 5.61369 5.67187 5.69885 5.78542 5.91044 5.94719 6.18908 6.28916 6.36789 6.45922 6.63700 6.72492 6.83749 6.90265 7.11445 7.17179 7.21843 7.32553 7.36895 7.50057 7.66640 7.83296 7.88197 8.62609 9.08487 9.65552 11.15501 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.003562 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.429925 B = 7857.962270 C = 8132.474295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.171 3.829 4 C -0.264 4.264 5 C 0.130 3.870 6 N -0.509 5.509 7 C 0.149 3.851 8 C -0.157 4.157 9 C 0.109 3.891 10 N -0.679 5.679 11 C 0.068 3.932 12 C -0.048 4.048 13 C -0.130 4.130 14 C -0.117 4.117 15 C -0.004 4.004 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.266 1.266 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.163 0.837 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.342 0.658 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.015 0.985 42 H 0.008 0.992 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.802 15.006 14.312 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.117 3.883 4 C -0.285 4.285 5 C -0.027 4.027 6 N -0.221 5.221 7 C -0.007 4.007 8 C -0.161 4.161 9 C -0.021 4.021 10 N -0.311 5.311 11 C -0.061 4.061 12 C -0.049 4.049 13 C -0.187 4.187 14 C -0.175 4.175 15 C -0.042 4.042 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.191 1.191 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.730 15.842 14.030 24.195 hybrid contribution -0.865 -2.024 1.068 2.446 sum -12.595 13.819 15.098 24.032 Atomic orbital electron populations 1.23146 0.77753 1.04514 1.01505 1.86102 1.21864 1.26201 1.87590 1.19258 0.92052 0.84679 0.92334 1.22181 1.01397 0.93253 1.11622 1.22527 0.90412 0.96847 0.92908 1.67752 1.07025 1.32172 1.15147 1.22600 1.00365 0.85968 0.91801 1.20345 0.90810 0.97839 1.07061 1.20614 0.98156 0.91919 0.91413 1.60654 1.19433 1.32176 1.18872 1.22147 0.96969 0.88912 0.98072 1.20416 0.96061 0.96514 0.91896 1.21771 0.95472 0.98751 1.02709 1.21611 0.98997 0.96900 0.99967 1.19625 0.94492 0.92138 0.97928 1.21145 1.30836 1.09507 0.92927 0.90443 1.25018 0.96284 0.97187 0.95126 1.69907 1.42607 1.23455 1.18634 0.86847 0.79659 0.80164 0.82987 1.20551 1.21570 1.19094 0.87768 0.92518 0.92221 0.84535 0.82741 0.81981 0.90085 0.94250 0.83868 0.91471 0.95849 0.94701 0.91214 0.94177 0.94165 0.92179 0.93709 0.96674 0.97416 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.31 9.86 -18.94 -0.19 -3.49 16 3 C 0.17 1.91 6.70 -38.82 -0.26 1.65 16 4 C -0.26 -2.44 9.11 -39.30 -0.36 -2.80 16 5 C 0.13 1.26 11.17 -17.60 -0.20 1.06 16 6 N -0.51 -6.03 10.36 -13.33 -0.14 -6.17 16 7 C 0.15 1.71 10.82 -17.59 -0.19 1.52 16 8 C -0.16 -1.87 5.42 -104.34 -0.57 -2.43 16 9 C 0.11 1.35 5.54 -4.97 -0.03 1.32 16 10 N -0.68 -9.92 5.70 -115.06 -0.66 -10.57 16 11 C 0.07 1.12 4.65 -3.82 -0.02 1.11 16 12 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 13 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 14 C -0.12 -2.30 8.06 37.16 0.30 -2.00 16 15 C 0.00 -0.10 3.11 -27.89 -0.09 -0.18 16 16 C -0.51 -14.07 8.20 -34.44 -0.28 -14.35 16 17 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 19 N -0.91 -27.94 13.96 55.43 0.77 -27.16 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.30 7.71 -51.92 -0.40 -0.10 16 26 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 27 H 0.14 0.89 6.47 -52.49 -0.34 0.55 16 28 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.16 1.58 8.04 -52.49 -0.42 1.16 16 30 H 0.08 0.92 8.02 -51.93 -0.42 0.51 16 31 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 32 H 0.34 5.11 6.76 -39.29 -0.27 4.85 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 36 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 37 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.30 6.61 -51.93 -0.34 0.96 16 40 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 41 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -31.77 342.51 -7.16 -38.94 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.86 Total: 1.45 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.59 Total: -15.37 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.02 Total: -43.91 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.19 Total: -3.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.77 -7.16 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.926 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds